HEADER TRANSPORT PROTEIN 25-SEP-01 1K1C TITLE SOLUTION STRUCTURE OF CRH, THE BACILLUS SUBTILIS CATABOLITE REPRESSION TITLE 2 HPR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATABOLITE REPRESSION HPR-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OPEN-FACED B-SANDWICH, PHOSPHOTRANSFERASE SYSTEM, CARBON CATABOLITE KEYWDS 2 REPRESSION, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR A.FAVIER,B.BRUTSCHER,M.BLACKLEDGE,A.GALINIER,J.DEUTSCHER,F.PENIN, AUTHOR 2 D.MARION REVDAT 4 23-FEB-22 1K1C 1 REMARK REVDAT 3 24-FEB-09 1K1C 1 VERSN REVDAT 2 03-APR-02 1K1C 1 JRNL REVDAT 1 17-OCT-01 1K1C 0 JRNL AUTH A.FAVIER,B.BRUTSCHER,M.BLACKLEDGE,A.GALINIER,J.DEUTSCHER, JRNL AUTH 2 F.PENIN,D.MARION JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF CRH, THE BACILLUS JRNL TITL 2 SUBTILIS CATABOLITE REPRESSION HPR. JRNL REF J.MOL.BIOL. V. 317 131 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 11916384 JRNL DOI 10.1006/JMBI.2002.5397 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.PENIN,A.FAVIER,R.MONTSERRET,B.BRUTSCHER,J.DEUTSCHER, REMARK 1 AUTH 2 D.MARION,D.GALINIER REMARK 1 TITL EVIDENCE FOR A DIMERISATION STATE OF THE BACILLUS SUBTILIS REMARK 1 TITL 2 CATABOLITE REPRESSION HPR-LIKE PROTEIN, CRH REMARK 1 REF J.MOL.MICROBIOL.BIOTECHNOL. V. 3 429 2001 REMARK 1 REFN ISSN 1464-1801 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 95.0, AMBER 4 REMARK 3 AUTHORS : MSI (DISCOVER), CORNELL ET AL. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K1C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014436. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM CRH, 15N, 20 MM SODIUM REMARK 210 PHOSPHATE BUFFER, 50 MM NACL, REMARK 210 0.05% SODIUM AZIDE; 0.5MM CRH, REMARK 210 15N 13C, 20 MM SODIUM PHOSPHATE REMARK 210 BUFFER, 50 MM NACL, 0.05% SODIUM REMARK 210 AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNCA-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2000, VNMR 6.A, INSIGHT II REMARK 210 97.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 16 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG2 GLU A 36 HB2 LYS A 41 0.93 REMARK 500 HB2 GLN A 3 HG3 GLN A 66 0.98 REMARK 500 HA LYS A 37 HG13 VAL A 61 1.03 REMARK 500 HD3 LYS A 11 HA VAL A 85 1.15 REMARK 500 HA SER A 31 HA3 GLY A 67 1.21 REMARK 500 HB2 GLU A 25 HD13 LEU A 77 1.23 REMARK 500 HB3 LYS A 5 HG12 ILE A 64 1.25 REMARK 500 HA LEU A 14 HB1 ALA A 19 1.25 REMARK 500 HD12 LEU A 35 HG21 VAL A 61 1.25 REMARK 500 HA GLU A 7 HA THR A 62 1.27 REMARK 500 HG3 GLN A 3 HB2 GLN A 66 1.29 REMARK 500 HA GLN A 71 HD22 LEU A 74 1.29 REMARK 500 HD13 LEU A 10 H GLY A 13 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 VAL A 61 CA - CB - CG1 ANGL. DEV. = -9.8 DEGREES REMARK 500 6 ALA A 19 N - CA - CB ANGL. DEV. = -10.6 DEGREES REMARK 500 9 VAL A 61 CA - CB - CG1 ANGL. DEV. = -10.5 DEGREES REMARK 500 11 ALA A 19 N - CA - CB ANGL. DEV. = -8.7 DEGREES REMARK 500 17 LEU A 77 CA - CB - CG ANGL. DEV. = -15.7 DEGREES REMARK 500 23 VAL A 61 CA - CB - CG1 ANGL. DEV. = -10.3 DEGREES REMARK 500 24 TYR A 80 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 14 54.50 34.05 REMARK 500 1 ALA A 16 -55.58 175.98 REMARK 500 1 LYS A 37 94.24 -58.41 REMARK 500 1 LEU A 50 -76.88 -70.61 REMARK 500 1 SER A 52 -72.33 -83.26 REMARK 500 1 GLN A 66 63.68 -110.64 REMARK 500 1 ASP A 69 51.65 -110.54 REMARK 500 1 GLU A 70 -79.72 -50.58 REMARK 500 1 GLU A 84 -105.93 -108.92 REMARK 500 2 ALA A 16 -66.44 65.53 REMARK 500 2 PHE A 22 -72.26 -49.63 REMARK 500 2 LYS A 37 95.43 -64.20 REMARK 500 2 LEU A 50 -72.67 -49.36 REMARK 500 2 SER A 52 -79.34 -81.27 REMARK 500 2 GLN A 66 62.58 -116.22 REMARK 500 2 GLU A 70 -78.05 -35.95 REMARK 500 2 GLU A 84 -102.95 -109.66 REMARK 500 3 LEU A 10 89.26 -64.29 REMARK 500 3 LEU A 14 60.67 38.77 REMARK 500 3 ALA A 16 -23.82 -166.71 REMARK 500 3 ARG A 17 -73.99 -113.30 REMARK 500 3 LYS A 37 87.79 -63.21 REMARK 500 3 SER A 52 -71.19 -81.32 REMARK 500 3 THR A 57 121.33 -38.77 REMARK 500 3 GLN A 66 66.03 -117.33 REMARK 500 3 ASP A 69 56.01 -111.81 REMARK 500 3 GLU A 70 -73.73 -59.68 REMARK 500 3 GLU A 84 -129.84 -86.63 REMARK 500 4 LEU A 14 64.30 39.95 REMARK 500 4 GLN A 15 -71.12 -100.17 REMARK 500 4 ALA A 16 -14.59 -144.83 REMARK 500 4 ARG A 17 -76.22 -131.61 REMARK 500 4 LYS A 37 84.30 -67.67 REMARK 500 4 LEU A 50 -72.44 -45.76 REMARK 500 4 GLU A 70 -80.06 -34.01 REMARK 500 4 GLU A 84 -114.11 -97.04 REMARK 500 5 ALA A 16 -131.01 61.34 REMARK 500 5 ARG A 17 -60.99 -24.69 REMARK 500 5 PRO A 18 -76.12 -53.44 REMARK 500 5 LYS A 37 87.92 -62.02 REMARK 500 5 LEU A 50 -80.72 -70.10 REMARK 500 5 SER A 52 -77.01 -81.42 REMARK 500 5 ASP A 69 56.75 -111.26 REMARK 500 5 GLU A 70 -72.38 -61.43 REMARK 500 5 GLU A 84 -110.01 -96.30 REMARK 500 6 LEU A 10 85.16 -66.93 REMARK 500 6 LEU A 14 56.29 39.47 REMARK 500 6 GLN A 15 -62.88 -95.60 REMARK 500 6 ALA A 16 -39.53 -130.37 REMARK 500 6 ARG A 17 -61.85 -146.86 REMARK 500 REMARK 500 THIS ENTRY HAS 254 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 PHE A 29 0.09 SIDE CHAIN REMARK 500 2 PHE A 29 0.08 SIDE CHAIN REMARK 500 2 TYR A 80 0.18 SIDE CHAIN REMARK 500 3 TYR A 80 0.07 SIDE CHAIN REMARK 500 4 TYR A 80 0.09 SIDE CHAIN REMARK 500 5 PHE A 29 0.08 SIDE CHAIN REMARK 500 5 TYR A 80 0.12 SIDE CHAIN REMARK 500 6 TYR A 80 0.20 SIDE CHAIN REMARK 500 7 PHE A 22 0.14 SIDE CHAIN REMARK 500 8 TYR A 80 0.11 SIDE CHAIN REMARK 500 9 PHE A 22 0.08 SIDE CHAIN REMARK 500 9 TYR A 80 0.09 SIDE CHAIN REMARK 500 11 TYR A 80 0.07 SIDE CHAIN REMARK 500 12 TYR A 80 0.07 SIDE CHAIN REMARK 500 14 ARG A 17 0.09 SIDE CHAIN REMARK 500 16 PHE A 29 0.07 SIDE CHAIN REMARK 500 17 TYR A 80 0.16 SIDE CHAIN REMARK 500 18 TYR A 80 0.08 SIDE CHAIN REMARK 500 19 TYR A 80 0.08 SIDE CHAIN REMARK 500 20 TYR A 80 0.12 SIDE CHAIN REMARK 500 22 PHE A 22 0.08 SIDE CHAIN REMARK 500 23 TYR A 80 0.19 SIDE CHAIN REMARK 500 24 ARG A 9 0.10 SIDE CHAIN REMARK 500 24 TYR A 80 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HID RELATED DB: PDB REMARK 900 2HID CONTAINS CRH HOMOLOGOUS PROTEIN DBREF 1K1C A 2 85 UNP O06976 CRH_BACSU 2 85 SEQRES 1 A 84 VAL GLN GLN LYS VAL GLU VAL ARG LEU LYS THR GLY LEU SEQRES 2 A 84 GLN ALA ARG PRO ALA ALA LEU PHE VAL GLN GLU ALA ASN SEQRES 3 A 84 ARG PHE THR SER ASP VAL PHE LEU GLU LYS ASP GLY LYS SEQRES 4 A 84 LYS VAL ASN ALA LYS SER ILE MET GLY LEU MET SER LEU SEQRES 5 A 84 ALA VAL SER THR GLY THR GLU VAL THR LEU ILE ALA GLN SEQRES 6 A 84 GLY GLU ASP GLU GLN GLU ALA LEU GLU LYS LEU ALA ALA SEQRES 7 A 84 TYR VAL GLN GLU GLU VAL HELIX 1 1 ALA A 16 PHE A 29 1 14 HELIX 2 2 SER A 46 MET A 51 1 6 HELIX 3 3 ASP A 69 GLU A 84 1 16 SHEET 1 A 4 GLN A 3 ARG A 9 0 SHEET 2 A 4 GLU A 60 GLY A 67 -1 O LEU A 63 N VAL A 6 SHEET 3 A 4 SER A 31 LYS A 37 -1 N GLU A 36 O THR A 62 SHEET 4 A 4 LYS A 40 VAL A 42 -1 O LYS A 40 N LYS A 37 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1