HEADER TRANSCRIPTION 25-SEP-01 1K1Q TITLE CRYSTAL STRUCTURE OF A DINB FAMILY ERROR PRONE DNA POLYMERASE FROM TITLE 2 SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DBH PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: DBH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17 KEYWDS DNA POLYMERASE, ERROR-PRONE POLYMERASE, LESION-BYPASS POLYMERASE, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR L.F.SILVIAN,E.A.TOTH,P.PHAM,M.F.GOODMAN,T.ELLENBERGER REVDAT 4 07-FEB-24 1K1Q 1 REMARK REVDAT 3 27-OCT-21 1K1Q 1 SEQADV REVDAT 2 24-FEB-09 1K1Q 1 VERSN REVDAT 1 31-OCT-01 1K1Q 0 JRNL AUTH L.F.SILVIAN,E.A.TOTH,P.PHAM,M.F.GOODMAN,T.ELLENBERGER JRNL TITL CRYSTAL STRUCTURE OF A DINB FAMILY ERROR-PRONE DNA JRNL TITL 2 POLYMERASE FROM SULFOLOBUS SOLFATARICUS. JRNL REF NAT.STRUCT.BIOL. V. 8 984 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11685247 JRNL DOI 10.1038/NSB1101-984 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1550344.120 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 21569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2141 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2651 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 321 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.12500 REMARK 3 B22 (A**2) : 11.12500 REMARK 3 B33 (A**2) : -22.25000 REMARK 3 B12 (A**2) : -12.44800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.56 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.788 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.230 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 67.39 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR, AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000, SODIUM FLUORIDE, MAGNESIUM REMARK 280 CHLORIDE, CACODYLATE, GLYCEROL, SUCROSE MONOLAURATE, PH 6.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.05833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.11667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.08750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 110.14583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.02917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 35 REMARK 465 ARG A 36 REMARK 465 THR A 37 REMARK 465 LYS A 38 REMARK 465 THR A 39 REMARK 465 SER A 40 REMARK 465 GLY A 41 REMARK 465 ALA A 42 REMARK 465 VAL A 43 REMARK 465 ALA A 44 REMARK 465 THR A 45 REMARK 465 LYS A 345 REMARK 465 THR A 346 REMARK 465 ASN A 347 REMARK 465 LEU A 348 REMARK 465 SER A 349 REMARK 465 ASP A 350 REMARK 465 PHE A 351 REMARK 465 PHE A 352 REMARK 465 ASP A 353 REMARK 465 ILE A 354 REMARK 465 ARG B 36 REMARK 465 THR B 37 REMARK 465 LYS B 38 REMARK 465 LYS B 345 REMARK 465 THR B 346 REMARK 465 ASN B 347 REMARK 465 LEU B 348 REMARK 465 SER B 349 REMARK 465 ASP B 350 REMARK 465 PHE B 351 REMARK 465 PHE B 352 REMARK 465 ASP B 353 REMARK 465 ILE B 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 VAL A 18 CG1 CG2 REMARK 470 TYR A 23 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 VAL A 30 CB CG1 CG2 REMARK 470 TYR A 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLN A 66 CG CD OE1 NE2 REMARK 470 ILE A 67 CG1 CG2 CD1 REMARK 470 TYR A 73 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 SER A 208 OG REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 SER A 235 OG REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 HIS A 304 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 ASP A 339 CG OD1 OD2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 TYR B 33 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 ASN B 121 CG OD1 ND2 REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 ASP B 182 CG OD1 OD2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 LEU B 207 CG CD1 CD2 REMARK 470 SER B 208 OG REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 THR B 218 OG1 CG2 REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 SER B 235 OG REMARK 470 GLU B 236 CG CD OE1 OE2 REMARK 470 ASP B 258 CG OD1 OD2 REMARK 470 ASP B 294 CG OD1 OD2 REMARK 470 LEU B 296 CG CD1 CD2 REMARK 470 SER B 297 OG REMARK 470 LYS B 300 CG CD CE NZ REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 HIS B 304 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 321 CG CD OE1 OE2 REMARK 470 LYS B 327 CG CD CE NZ REMARK 470 ARG B 328 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 339 CG OD1 OD2 REMARK 470 ASN B 344 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 326 NH1 ARG A 329 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 27 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 LEU A 293 N - CA - C ANGL. DEV. = -35.1 DEGREES REMARK 500 GLU B 213 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 VAL B 261 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 64.02 31.17 REMARK 500 PHE A 11 -71.10 -43.93 REMARK 500 ASN A 20 70.09 -109.96 REMARK 500 PRO A 21 -31.97 -38.39 REMARK 500 TYR A 23 24.25 100.70 REMARK 500 LYS A 24 24.84 -79.11 REMARK 500 PRO A 27 99.52 -41.43 REMARK 500 TYR A 33 -107.43 -94.31 REMARK 500 PRO A 60 133.48 -29.90 REMARK 500 ILE A 62 -73.86 -36.77 REMARK 500 ALA A 64 -76.75 -34.34 REMARK 500 MET A 65 11.03 -65.88 REMARK 500 ILE A 67 6.99 -58.94 REMARK 500 ALA A 68 53.31 174.31 REMARK 500 PRO A 69 -15.67 -48.34 REMARK 500 PRO A 75 -179.54 -45.98 REMARK 500 ALA A 102 -98.36 -83.13 REMARK 500 SER A 103 -157.95 -94.09 REMARK 500 ASP A 105 33.13 -149.78 REMARK 500 GLU A 116 43.32 24.13 REMARK 500 GLN A 131 -78.99 -53.57 REMARK 500 GLU A 132 -55.49 -27.92 REMARK 500 LYS A 158 -7.93 -57.29 REMARK 500 SER A 159 48.21 -151.07 REMARK 500 LEU A 164 71.57 -178.32 REMARK 500 TYR A 211 -54.38 -17.62 REMARK 500 ILE A 217 -73.02 -83.61 REMARK 500 THR A 218 -172.84 -61.65 REMARK 500 LYS A 220 -44.01 -177.28 REMARK 500 TYR A 234 72.63 -34.30 REMARK 500 SER A 235 59.10 -106.61 REMARK 500 ASN A 240 85.47 -53.99 REMARK 500 ASP A 258 -165.64 -52.61 REMARK 500 VAL A 259 -38.11 -147.70 REMARK 500 ASP A 292 -95.98 -56.00 REMARK 500 LEU A 293 132.09 170.77 REMARK 500 ASP A 294 131.96 143.56 REMARK 500 LYS A 298 107.65 171.55 REMARK 500 HIS A 304 -73.59 -35.14 REMARK 500 ILE A 306 -125.14 81.27 REMARK 500 SER A 307 153.63 127.36 REMARK 500 ARG A 328 -35.73 103.03 REMARK 500 ASN A 330 -153.52 -81.56 REMARK 500 ARG A 333 126.09 102.22 REMARK 500 TYR B 10 57.25 28.77 REMARK 500 GLN B 22 -3.77 -58.49 REMARK 500 PRO B 27 95.65 -41.67 REMARK 500 SER B 34 136.47 177.62 REMARK 500 SER B 40 151.89 142.42 REMARK 500 LEU B 53 0.11 -57.87 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K1S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DINB FROM SULFOLOBUS SOLFATARICUS DBREF 1K1Q A 1 354 UNP P96022 DPO41_SULSO 1 354 DBREF 1K1Q B 1 354 UNP P96022 DPO41_SULSO 1 354 SEQADV 1K1Q SER A 31 UNP P96022 CYS 31 ENGINEERED MUTATION SEQADV 1K1Q SER B 31 UNP P96022 CYS 31 ENGINEERED MUTATION SEQRES 1 A 354 MET ILE VAL ILE PHE VAL ASP PHE ASP TYR PHE PHE ALA SEQRES 2 A 354 GLN VAL GLU GLU VAL LEU ASN PRO GLN TYR LYS GLY LYS SEQRES 3 A 354 PRO LEU VAL VAL SER VAL TYR SER GLY ARG THR LYS THR SEQRES 4 A 354 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 354 LEU GLY VAL LYS ALA GLY MET PRO ILE ILE LYS ALA MET SEQRES 6 A 354 GLN ILE ALA PRO SER ALA ILE TYR VAL PRO MET ARG LYS SEQRES 7 A 354 PRO ILE TYR GLU ALA PHE SER ASN ARG ILE MET ASN LEU SEQRES 8 A 354 LEU ASN LYS HIS ALA ASP LYS ILE GLU VAL ALA SER ILE SEQRES 9 A 354 ASP GLU ALA TYR LEU ASP VAL THR ASN LYS VAL GLU GLY SEQRES 10 A 354 ASN PHE GLU ASN GLY ILE GLU LEU ALA ARG LYS ILE LYS SEQRES 11 A 354 GLN GLU ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL SEQRES 12 A 354 GLY VAL ALA PRO ASN LYS ILE LEU ALA LYS ILE ILE ALA SEQRES 13 A 354 ASP LYS SER LYS PRO ASN GLY LEU GLY VAL ILE ARG PRO SEQRES 14 A 354 THR GLU VAL GLN ASP PHE LEU ASN GLU LEU ASP ILE ASP SEQRES 15 A 354 GLU ILE PRO GLY ILE GLY SER VAL LEU ALA ARG ARG LEU SEQRES 16 A 354 ASN GLU LEU GLY ILE GLN LYS LEU ARG ASP ILE LEU SER SEQRES 17 A 354 LYS ASN TYR ASN GLU LEU GLU LYS ILE THR GLY LYS ALA SEQRES 18 A 354 LYS ALA LEU TYR LEU LEU LYS LEU ALA GLN ASN LYS TYR SEQRES 19 A 354 SER GLU PRO VAL GLU ASN LYS SER LYS ILE PRO HIS GLY SEQRES 20 A 354 ARG TYR LEU THR LEU PRO TYR ASN THR ARG ASP VAL LYS SEQRES 21 A 354 VAL ILE LEU PRO TYR LEU LYS LYS ALA ILE ASN GLU ALA SEQRES 22 A 354 TYR ASN LYS VAL ASN GLY ILE PRO MET ARG ILE THR VAL SEQRES 23 A 354 ILE ALA ILE MET GLU ASP LEU ASP ILE LEU SER LYS GLY SEQRES 24 A 354 LYS LYS PHE LYS HIS GLY ILE SER ILE ASP ASN ALA TYR SEQRES 25 A 354 LYS VAL ALA GLU ASP LEU LEU ARG GLU LEU LEU VAL ARG SEQRES 26 A 354 ASP LYS ARG ARG ASN VAL ARG ARG ILE GLY VAL LYS LEU SEQRES 27 A 354 ASP ASN ILE ILE ILE ASN LYS THR ASN LEU SER ASP PHE SEQRES 28 A 354 PHE ASP ILE SEQRES 1 B 354 MET ILE VAL ILE PHE VAL ASP PHE ASP TYR PHE PHE ALA SEQRES 2 B 354 GLN VAL GLU GLU VAL LEU ASN PRO GLN TYR LYS GLY LYS SEQRES 3 B 354 PRO LEU VAL VAL SER VAL TYR SER GLY ARG THR LYS THR SEQRES 4 B 354 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 354 LEU GLY VAL LYS ALA GLY MET PRO ILE ILE LYS ALA MET SEQRES 6 B 354 GLN ILE ALA PRO SER ALA ILE TYR VAL PRO MET ARG LYS SEQRES 7 B 354 PRO ILE TYR GLU ALA PHE SER ASN ARG ILE MET ASN LEU SEQRES 8 B 354 LEU ASN LYS HIS ALA ASP LYS ILE GLU VAL ALA SER ILE SEQRES 9 B 354 ASP GLU ALA TYR LEU ASP VAL THR ASN LYS VAL GLU GLY SEQRES 10 B 354 ASN PHE GLU ASN GLY ILE GLU LEU ALA ARG LYS ILE LYS SEQRES 11 B 354 GLN GLU ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL SEQRES 12 B 354 GLY VAL ALA PRO ASN LYS ILE LEU ALA LYS ILE ILE ALA SEQRES 13 B 354 ASP LYS SER LYS PRO ASN GLY LEU GLY VAL ILE ARG PRO SEQRES 14 B 354 THR GLU VAL GLN ASP PHE LEU ASN GLU LEU ASP ILE ASP SEQRES 15 B 354 GLU ILE PRO GLY ILE GLY SER VAL LEU ALA ARG ARG LEU SEQRES 16 B 354 ASN GLU LEU GLY ILE GLN LYS LEU ARG ASP ILE LEU SER SEQRES 17 B 354 LYS ASN TYR ASN GLU LEU GLU LYS ILE THR GLY LYS ALA SEQRES 18 B 354 LYS ALA LEU TYR LEU LEU LYS LEU ALA GLN ASN LYS TYR SEQRES 19 B 354 SER GLU PRO VAL GLU ASN LYS SER LYS ILE PRO HIS GLY SEQRES 20 B 354 ARG TYR LEU THR LEU PRO TYR ASN THR ARG ASP VAL LYS SEQRES 21 B 354 VAL ILE LEU PRO TYR LEU LYS LYS ALA ILE ASN GLU ALA SEQRES 22 B 354 TYR ASN LYS VAL ASN GLY ILE PRO MET ARG ILE THR VAL SEQRES 23 B 354 ILE ALA ILE MET GLU ASP LEU ASP ILE LEU SER LYS GLY SEQRES 24 B 354 LYS LYS PHE LYS HIS GLY ILE SER ILE ASP ASN ALA TYR SEQRES 25 B 354 LYS VAL ALA GLU ASP LEU LEU ARG GLU LEU LEU VAL ARG SEQRES 26 B 354 ASP LYS ARG ARG ASN VAL ARG ARG ILE GLY VAL LYS LEU SEQRES 27 B 354 ASP ASN ILE ILE ILE ASN LYS THR ASN LEU SER ASP PHE SEQRES 28 B 354 PHE ASP ILE FORMUL 3 HOH *68(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 ASN A 47 LYS A 52 1 6 HELIX 3 3 PRO A 60 MET A 65 1 6 HELIX 4 4 ARG A 77 LYS A 94 1 18 HELIX 5 5 PHE A 119 LYS A 138 1 20 HELIX 6 6 ASN A 148 LYS A 158 1 11 HELIX 7 7 ARG A 168 THR A 170 5 3 HELIX 8 8 GLU A 171 GLU A 178 1 8 HELIX 9 9 GLY A 188 ASN A 196 1 9 HELIX 10 10 LYS A 202 LYS A 209 5 8 HELIX 11 11 ASN A 210 LYS A 216 1 7 HELIX 12 12 LYS A 220 ASN A 232 1 13 HELIX 13 13 LEU A 263 LYS A 276 1 14 HELIX 14 14 SER A 307 LEU A 323 1 17 HELIX 15 15 TYR B 10 ASN B 20 1 11 HELIX 16 16 PRO B 21 LYS B 24 5 4 HELIX 17 17 ASN B 47 LEU B 53 1 7 HELIX 18 18 ILE B 61 ILE B 67 1 7 HELIX 19 19 ARG B 77 LYS B 94 1 18 HELIX 20 20 THR B 112 GLU B 116 5 5 HELIX 21 21 ASN B 118 LYS B 138 1 21 HELIX 22 22 ASN B 148 LYS B 160 1 13 HELIX 23 23 GLU B 171 LEU B 179 1 9 HELIX 24 24 ASP B 180 ILE B 184 5 5 HELIX 25 25 GLY B 188 LEU B 198 1 11 HELIX 26 26 LEU B 203 LEU B 207 5 5 HELIX 27 27 LEU B 214 GLY B 219 1 6 HELIX 28 28 LYS B 220 GLN B 231 1 12 HELIX 29 29 LEU B 263 LYS B 276 1 14 HELIX 30 30 SER B 307 VAL B 324 1 18 SHEET 1 A 5 LYS A 98 VAL A 101 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 ASP A 7 -1 N ILE A 4 O LEU A 109 SHEET 4 A 5 VAL A 143 ALA A 146 -1 O GLY A 144 N PHE A 5 SHEET 5 A 5 LEU A 164 VAL A 166 1 O GLY A 165 N VAL A 145 SHEET 1 B 4 ILE A 295 LYS A 301 0 SHEET 2 B 4 PRO A 281 MET A 290 -1 N ALA A 288 O LEU A 296 SHEET 3 B 4 VAL A 331 ILE A 342 -1 O GLY A 335 N ILE A 287 SHEET 4 B 4 LYS A 241 SER A 242 -1 N SER A 242 O ILE A 341 SHEET 1 C 4 ILE A 295 LYS A 301 0 SHEET 2 C 4 PRO A 281 MET A 290 -1 N ALA A 288 O LEU A 296 SHEET 3 C 4 VAL A 331 ILE A 342 -1 O GLY A 335 N ILE A 287 SHEET 4 C 4 HIS A 246 LEU A 250 -1 N LEU A 250 O ILE A 334 SHEET 1 D 5 LYS B 98 SER B 103 0 SHEET 2 D 5 GLU B 106 ASP B 110 -1 O TYR B 108 N GLU B 100 SHEET 3 D 5 VAL B 3 PHE B 8 -1 N VAL B 6 O ALA B 107 SHEET 4 D 5 VAL B 141 ALA B 146 -1 O THR B 142 N ASP B 7 SHEET 5 D 5 LEU B 164 VAL B 166 1 O GLY B 165 N VAL B 145 SHEET 1 E 3 GLY B 41 ALA B 46 0 SHEET 2 E 3 LEU B 28 TYR B 33 -1 N VAL B 30 O ALA B 44 SHEET 3 E 3 ILE B 72 PRO B 75 1 O ILE B 72 N VAL B 29 SHEET 1 F 2 LYS B 241 SER B 242 0 SHEET 2 F 2 ILE B 341 ILE B 342 -1 O ILE B 341 N SER B 242 SHEET 1 G 4 HIS B 246 LEU B 250 0 SHEET 2 G 4 VAL B 331 LEU B 338 -1 O LEU B 338 N HIS B 246 SHEET 3 G 4 ARG B 283 MET B 290 -1 N THR B 285 O LYS B 337 SHEET 4 G 4 LEU B 296 LYS B 301 -1 O LYS B 298 N VAL B 286 CISPEP 1 LYS B 160 PRO B 161 0 -1.04 CRYST1 111.715 111.715 132.175 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008951 0.005168 0.000000 0.00000 SCALE2 0.000000 0.010336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007566 0.00000