HEADER TRANSFERASE 26-SEP-01 1K1W TITLE CRYSTAL STRUCTURE OF 4-ALPHA-GLUCANOTRANSFERASE FROM THERMOCOCCUS TITLE 2 LITORALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-ALPHA-GLUCANOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.25; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS LITORALIS; SOURCE 3 ORGANISM_TAXID: 2265; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PUT7 KEYWDS 4-ALPHA-GLUCANOTRANSFERASE, SELENO-METHIONINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.IMAMURA,S.FUSHINOBU,T.KUMASAKA,M.YAMAMOTO,B.S.JEON,T.WAKAGI, AUTHOR 2 H.MATSUZAWA REVDAT 3 29-JUL-20 1K1W 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 24-FEB-09 1K1W 1 VERSN REVDAT 1 17-JUN-03 1K1W 0 JRNL AUTH H.IMAMURA,S.FUSHINOBU,M.YAMAMOTO,T.KUMASAKA,B.S.JEON, JRNL AUTH 2 T.WAKAGI,H.MATSUZAWA JRNL TITL CRYSTAL STRUCTURES OF 4-ALPHA-GLUCANOTRANSFERASE FROM JRNL TITL 2 THERMOCOCCUS LITORALIS AND ITS COMPLEX WITH AN INHIBITOR JRNL REF J.BIOL.CHEM. V. 278 19378 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12618437 JRNL DOI 10.1074/JBC.M213134200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4077103.990 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 26666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1308 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3922 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 202 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.24000 REMARK 3 B22 (A**2) : 12.24000 REMARK 3 B33 (A**2) : -24.48000 REMARK 3 B12 (A**2) : 13.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 49.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45PX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9795, 1.0400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27918 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, AMMONIUM SULFATE, HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.32000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 164.64000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.32000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 164.64000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.32000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 164.64000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 82.32000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 164.64000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 THR A 201 REMARK 465 SER A 202 REMARK 465 ASP A 203 REMARK 465 ASP A 204 REMARK 465 PRO A 205 REMARK 465 GLU A 226 REMARK 465 TRP A 227 REMARK 465 VAL A 228 REMARK 465 TYR A 229 REMARK 465 GLU A 230 REMARK 465 LYS A 231 REMARK 465 GLY A 232 REMARK 465 SER A 243 REMARK 465 ASN A 244 REMARK 465 THR A 450 REMARK 465 LYS A 451 REMARK 465 PRO A 452 REMARK 465 GLU A 453 REMARK 465 LYS A 454 REMARK 465 GLU A 455 REMARK 465 SER A 456 REMARK 465 GLU A 457 REMARK 465 GLU A 458 REMARK 465 GLY A 459 REMARK 465 ILE A 460 REMARK 465 ALA A 461 REMARK 465 SER A 462 REMARK 465 ILE A 463 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 168 N - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -44.50 -149.83 REMARK 500 PRO A 42 -14.88 -44.86 REMARK 500 ALA A 83 -164.94 177.52 REMARK 500 ARG A 124 26.97 40.25 REMARK 500 PRO A 128 69.00 -60.09 REMARK 500 GLU A 129 -11.38 -169.68 REMARK 500 SER A 151 -3.20 -53.42 REMARK 500 LYS A 156 -37.22 -33.42 REMARK 500 ASP A 167 134.10 -171.70 REMARK 500 LYS A 180 -70.78 -53.44 REMARK 500 ARG A 182 2.89 -61.91 REMARK 500 PHE A 187 92.43 173.50 REMARK 500 ARG A 188 96.32 42.17 REMARK 500 PRO A 189 81.99 -28.94 REMARK 500 LEU A 197 37.52 -71.33 REMARK 500 SER A 199 -136.14 54.24 REMARK 500 LYS A 207 121.57 43.21 REMARK 500 PRO A 222 105.22 -46.69 REMARK 500 SER A 257 -24.39 -161.69 REMARK 500 PRO A 261 161.09 -47.41 REMARK 500 ARG A 262 -79.77 -53.25 REMARK 500 ILE A 269 91.05 -68.48 REMARK 500 ALA A 270 -163.23 -128.97 REMARK 500 SER A 271 -161.85 -161.71 REMARK 500 ALA A 282 -65.88 -21.76 REMARK 500 ALA A 355 -10.14 88.06 REMARK 500 LEU A 391 154.83 171.82 REMARK 500 PHE A 395 38.30 70.04 REMARK 500 ASN A 405 -162.73 -127.04 REMARK 500 LYS A 413 77.30 -113.75 REMARK 500 PRO A 447 -154.53 -117.65 REMARK 500 GLU A 448 -39.28 65.48 REMARK 500 GLU A 465 22.96 134.82 REMARK 500 ALA A 486 -166.66 -121.65 REMARK 500 LEU A 488 58.39 79.17 REMARK 500 PRO A 495 -5.91 -55.12 REMARK 500 VAL A 505 60.22 -109.35 REMARK 500 ASP A 512 51.58 -119.84 REMARK 500 ASN A 525 19.14 -145.18 REMARK 500 GLU A 532 64.09 -118.41 REMARK 500 TYR A 536 89.29 -60.83 REMARK 500 ALA A 537 -159.12 -125.27 REMARK 500 ARG A 544 107.94 -166.70 REMARK 500 ALA A 579 57.98 -92.13 REMARK 500 LYS A 612 101.07 -165.28 REMARK 500 ALA A 613 151.98 -36.71 REMARK 500 SER A 627 -165.78 -160.60 REMARK 500 LYS A 648 -34.29 -150.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 661 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 392 OD1 REMARK 620 2 ASP A 394 OD2 92.5 REMARK 620 3 ASP A 396 OD1 79.7 89.0 REMARK 620 4 ARG A 398 O 63.8 154.2 77.4 REMARK 620 5 GLU A 400 OE2 164.4 84.2 115.4 121.3 REMARK 620 6 GLU A 400 OE1 117.2 84.7 162.2 114.2 47.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K1X RELATED DB: PDB REMARK 900 1K1X CONTAINS THE SAME PROTEIN WITH 2-AMINO-2-HYDROXYMETHYL-PROPANE- REMARK 900 1,3-DIOL REMARK 900 RELATED ID: 1K1Y RELATED DB: PDB REMARK 900 1K1Y CONTAINS THE SAME PROTEIN COMPLEXED WITH ACARBOSE AND MALTOSE DBREF 1K1W A 1 659 UNP O32462 MALQ_THELI 1 659 SEQADV 1K1W MSE A 1 UNP O32462 MET 1 MODIFIED RESIDUE SEQADV 1K1W MSE A 35 UNP O32462 MET 35 MODIFIED RESIDUE SEQADV 1K1W MSE A 44 UNP O32462 MET 44 MODIFIED RESIDUE SEQADV 1K1W MSE A 104 UNP O32462 MET 104 MODIFIED RESIDUE SEQADV 1K1W MSE A 150 UNP O32462 MET 150 MODIFIED RESIDUE SEQADV 1K1W MSE A 250 UNP O32462 MET 250 MODIFIED RESIDUE SEQADV 1K1W MSE A 275 UNP O32462 MET 275 MODIFIED RESIDUE SEQADV 1K1W MSE A 326 UNP O32462 MET 326 MODIFIED RESIDUE SEQADV 1K1W MSE A 330 UNP O32462 MET 330 MODIFIED RESIDUE SEQADV 1K1W MSE A 332 UNP O32462 MET 332 MODIFIED RESIDUE SEQADV 1K1W MSE A 402 UNP O32462 MET 402 MODIFIED RESIDUE SEQADV 1K1W MSE A 522 UNP O32462 MET 522 MODIFIED RESIDUE SEQADV 1K1W MSE A 584 UNP O32462 MET 584 MODIFIED RESIDUE SEQADV 1K1W MSE A 642 UNP O32462 MET 642 MODIFIED RESIDUE SEQRES 1 A 659 MSE GLU ARG ILE ASN PHE ILE PHE GLY ILE HIS ASN HIS SEQRES 2 A 659 GLN PRO LEU GLY ASN PHE GLY TRP VAL PHE GLU GLU ALA SEQRES 3 A 659 TYR ASN ARG SER TYR ARG PRO PHE MSE GLU ILE LEU GLU SEQRES 4 A 659 GLU PHE PRO GLU MSE LYS VAL ASN VAL HIS PHE SER GLY SEQRES 5 A 659 PRO LEU LEU GLU TRP ILE GLU GLU ASN LYS PRO ASP TYR SEQRES 6 A 659 LEU ASP LEU LEU ARG SER LEU ILE LYS ARG GLY GLN LEU SEQRES 7 A 659 GLU ILE VAL VAL ALA GLY PHE TYR GLU PRO VAL LEU ALA SEQRES 8 A 659 ALA ILE PRO LYS GLU ASP ARG LEU VAL GLN ILE GLU MSE SEQRES 9 A 659 LEU LYS ASP TYR ALA ARG LYS LEU GLY TYR ASP ALA LYS SEQRES 10 A 659 GLY VAL TRP LEU THR GLU ARG VAL TRP GLN PRO GLU LEU SEQRES 11 A 659 VAL LYS SER LEU ARG GLU ALA GLY ILE GLU TYR VAL VAL SEQRES 12 A 659 VAL ASP ASP TYR HIS PHE MSE SER ALA GLY LEU SER LYS SEQRES 13 A 659 GLU GLU LEU PHE TRP PRO TYR TYR THR GLU ASP GLY GLY SEQRES 14 A 659 GLU VAL ILE THR VAL PHE PRO ILE ASP GLU LYS LEU ARG SEQRES 15 A 659 TYR LEU ILE PRO PHE ARG PRO VAL LYS LYS THR ILE GLU SEQRES 16 A 659 TYR LEU GLU SER LEU THR SER ASP ASP PRO SER LYS VAL SEQRES 17 A 659 ALA VAL PHE HIS ASP ASP GLY GLU LYS PHE GLY VAL TRP SEQRES 18 A 659 PRO GLY THR TYR GLU TRP VAL TYR GLU LYS GLY TRP LEU SEQRES 19 A 659 ARG GLU PHE PHE ASP ALA ILE THR SER ASN GLU LYS ILE SEQRES 20 A 659 ASN LEU MSE THR TYR SER GLU TYR LEU SER LYS PHE THR SEQRES 21 A 659 PRO ARG GLY LEU VAL TYR LEU PRO ILE ALA SER TYR PHE SEQRES 22 A 659 GLU MSE SER GLU TRP SER LEU PRO ALA LYS GLN ALA LYS SEQRES 23 A 659 LEU PHE VAL GLU PHE VAL GLU GLN LEU LYS GLU GLU GLY SEQRES 24 A 659 LYS PHE GLU LYS TYR ARG VAL PHE VAL ARG GLY GLY ILE SEQRES 25 A 659 TRP LYS ASN PHE PHE PHE LYS TYR PRO GLU SER ASN PHE SEQRES 26 A 659 MSE HIS LYS ARG MSE LEU MSE VAL SER LYS ALA VAL ARG SEQRES 27 A 659 ASP ASN PRO GLU ALA ARG LYS TYR ILE LEU LYS ALA GLN SEQRES 28 A 659 CYS ASN ASP ALA TYR TRP HIS GLY VAL PHE GLY GLY ILE SEQRES 29 A 659 TYR LEU PRO HIS LEU ARG ARG THR VAL TRP GLU ASN ILE SEQRES 30 A 659 ILE LYS ALA GLN ARG TYR LEU LYS PRO GLU ASN LYS ILE SEQRES 31 A 659 LEU ASP VAL ASP PHE ASP GLY ARG ALA GLU ILE MSE VAL SEQRES 32 A 659 GLU ASN ASP GLY PHE ILE ALA THR ILE LYS PRO HIS TYR SEQRES 33 A 659 GLY GLY SER ILE PHE GLU LEU SER SER LYS ARG LYS ALA SEQRES 34 A 659 VAL ASN TYR ASN ASP VAL LEU PRO ARG ARG TRP GLU HIS SEQRES 35 A 659 TYR HIS GLU VAL PRO GLU ALA THR LYS PRO GLU LYS GLU SEQRES 36 A 659 SER GLU GLU GLY ILE ALA SER ILE HIS GLU LEU GLY LYS SEQRES 37 A 659 GLN ILE PRO GLU GLU ILE ARG ARG GLU LEU ALA TYR ASP SEQRES 38 A 659 TRP GLN LEU ARG ALA ILE LEU GLN ASP HIS PHE ILE LYS SEQRES 39 A 659 PRO GLU GLU THR LEU ASP ASN TYR ARG LEU VAL LYS TYR SEQRES 40 A 659 HIS GLU LEU GLY ASP PHE VAL ASN GLN PRO TYR GLU TYR SEQRES 41 A 659 GLU MSE ILE GLU ASN GLY VAL LYS LEU TRP ARG GLU GLY SEQRES 42 A 659 GLY VAL TYR ALA GLU GLU LYS ILE PRO ALA ARG VAL GLU SEQRES 43 A 659 LYS LYS ILE GLU LEU THR GLU ASP GLY PHE ILE ALA LYS SEQRES 44 A 659 TYR ARG VAL LEU LEU GLU LYS PRO TYR LYS ALA LEU PHE SEQRES 45 A 659 GLY VAL GLU ILE ASN LEU ALA VAL HIS SER VAL MSE GLU SEQRES 46 A 659 LYS PRO GLU GLU PHE GLU ALA LYS GLU PHE GLU VAL ASN SEQRES 47 A 659 ASP PRO TYR GLY ILE GLY LYS VAL ARG ILE GLU LEU ASP SEQRES 48 A 659 LYS ALA ALA LYS VAL TRP LYS PHE PRO ILE LYS THR LEU SEQRES 49 A 659 SER GLN SER GLU ALA GLY TRP ASP PHE ILE GLN GLN GLY SEQRES 50 A 659 VAL SER TYR THR MSE LEU PHE PRO ILE GLU LYS GLU LEU SEQRES 51 A 659 GLU PHE THR VAL ARG PHE ARG GLU LEU MODRES 1K1W MSE A 35 MET SELENOMETHIONINE MODRES 1K1W MSE A 44 MET SELENOMETHIONINE MODRES 1K1W MSE A 104 MET SELENOMETHIONINE MODRES 1K1W MSE A 150 MET SELENOMETHIONINE MODRES 1K1W MSE A 250 MET SELENOMETHIONINE MODRES 1K1W MSE A 275 MET SELENOMETHIONINE MODRES 1K1W MSE A 326 MET SELENOMETHIONINE MODRES 1K1W MSE A 330 MET SELENOMETHIONINE MODRES 1K1W MSE A 332 MET SELENOMETHIONINE MODRES 1K1W MSE A 402 MET SELENOMETHIONINE MODRES 1K1W MSE A 522 MET SELENOMETHIONINE MODRES 1K1W MSE A 584 MET SELENOMETHIONINE MODRES 1K1W MSE A 642 MET SELENOMETHIONINE HET MSE A 35 8 HET MSE A 44 8 HET MSE A 104 8 HET MSE A 150 8 HET MSE A 250 8 HET MSE A 275 8 HET MSE A 326 8 HET MSE A 330 8 HET MSE A 332 8 HET MSE A 402 8 HET MSE A 522 8 HET MSE A 584 8 HET MSE A 642 8 HET GLC A 660 12 HET CA A 661 1 HET SO4 A 662 5 HETNAM MSE SELENOMETHIONINE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 GLC C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *68(H2 O) HELIX 1 1 PHE A 19 SER A 30 1 12 HELIX 2 2 SER A 30 GLU A 40 1 11 HELIX 3 3 SER A 51 LYS A 62 1 12 HELIX 4 4 LYS A 62 ARG A 75 1 14 HELIX 5 5 VAL A 89 ILE A 93 5 5 HELIX 6 6 PRO A 94 LEU A 112 1 19 HELIX 7 7 THR A 122 VAL A 125 5 4 HELIX 8 8 GLU A 129 ALA A 137 1 9 HELIX 9 9 ASP A 146 SER A 151 1 6 HELIX 10 10 SER A 155 LEU A 159 5 5 HELIX 11 11 LYS A 180 ILE A 185 1 6 HELIX 12 12 VAL A 190 LEU A 197 1 8 HELIX 13 13 GLU A 216 PHE A 218 5 3 HELIX 14 14 TRP A 233 THR A 242 1 10 HELIX 15 15 THR A 251 LEU A 256 1 6 HELIX 16 16 GLU A 274 SER A 279 1 6 HELIX 17 17 PRO A 281 GLU A 298 1 18 HELIX 18 18 LYS A 300 ARG A 305 1 6 HELIX 19 19 VAL A 306 VAL A 308 5 3 HELIX 20 20 ILE A 312 LYS A 314 5 3 HELIX 21 21 ASN A 315 TYR A 320 1 6 HELIX 22 22 TYR A 320 VAL A 337 1 18 HELIX 23 23 ASN A 340 ALA A 350 1 11 HELIX 24 24 GLY A 362 TYR A 365 5 4 HELIX 25 25 LEU A 366 ARG A 382 1 17 HELIX 26 26 GLU A 441 GLU A 445 5 5 HELIX 27 27 PRO A 471 ARG A 476 1 6 HELIX 28 28 THR A 498 LEU A 504 1 7 SHEET 1 A 4 VAL A 208 ASP A 214 0 SHEET 2 A 4 ASN A 5 ASN A 12 1 N ILE A 7 O ALA A 209 SHEET 3 A 4 VAL A 46 PHE A 50 1 O HIS A 49 N ASN A 12 SHEET 4 A 4 LEU A 78 ILE A 80 1 O GLU A 79 N VAL A 46 SHEET 1 B 3 VAL A 208 ASP A 214 0 SHEET 2 B 3 ASN A 5 ASN A 12 1 N ILE A 7 O ALA A 209 SHEET 3 B 3 ASN A 248 LEU A 249 1 O ASN A 248 N PHE A 6 SHEET 1 C 4 GLY A 118 TRP A 120 0 SHEET 2 C 4 TYR A 141 ASP A 145 1 O TYR A 141 N VAL A 119 SHEET 3 C 4 GLU A 170 ILE A 177 1 O PHE A 175 N VAL A 144 SHEET 4 C 4 TYR A 163 ASP A 167 -1 N TYR A 163 O VAL A 174 SHEET 1 D 5 LYS A 389 LEU A 391 0 SHEET 2 D 5 GLU A 400 GLU A 404 -1 O MSE A 402 N LYS A 389 SHEET 3 D 5 PHE A 408 ILE A 412 -1 O ALA A 410 N VAL A 403 SHEET 4 D 5 ILE A 420 SER A 425 -1 O SER A 424 N ILE A 409 SHEET 5 D 5 VAL A 430 ASN A 431 -1 O VAL A 430 N SER A 425 SHEET 1 E 5 ILE A 487 ILE A 493 0 SHEET 2 E 5 ALA A 570 LEU A 578 -1 O GLY A 573 N HIS A 491 SHEET 3 E 5 TRP A 631 ILE A 646 -1 O PHE A 644 N PHE A 572 SHEET 4 E 5 LYS A 605 GLN A 626 -1 N SER A 625 O ASP A 632 SHEET 5 E 5 GLU A 588 ASN A 598 -1 N PHE A 590 O VAL A 616 SHEET 1 F 9 ILE A 487 ILE A 493 0 SHEET 2 F 9 ALA A 570 LEU A 578 -1 O GLY A 573 N HIS A 491 SHEET 3 F 9 TRP A 631 ILE A 646 -1 O PHE A 644 N PHE A 572 SHEET 4 F 9 LYS A 605 GLN A 626 -1 N SER A 625 O ASP A 632 SHEET 5 F 9 GLU A 649 LEU A 659 -1 O LEU A 659 N LYS A 605 SHEET 6 F 9 GLY A 555 LEU A 563 -1 SHEET 7 F 9 VAL A 545 THR A 552 -1 N THR A 552 O GLY A 555 SHEET 8 F 9 GLY A 526 ARG A 531 -1 N LEU A 529 O LYS A 547 SHEET 9 F 9 GLU A 519 MSE A 522 -1 N GLU A 519 O TRP A 530 SHEET 1 G 2 GLY A 534 TYR A 536 0 SHEET 2 G 2 LYS A 540 PRO A 542 -1 O ILE A 541 N VAL A 535 LINK C PHE A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N GLU A 36 1555 1555 1.33 LINK C GLU A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N LYS A 45 1555 1555 1.33 LINK C GLU A 103 N MSE A 104 1555 1555 1.32 LINK C MSE A 104 N LEU A 105 1555 1555 1.33 LINK C PHE A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N SER A 151 1555 1555 1.33 LINK C LEU A 249 N MSE A 250 1555 1555 1.33 LINK C MSE A 250 N THR A 251 1555 1555 1.33 LINK C GLU A 274 N MSE A 275 1555 1555 1.33 LINK C MSE A 275 N SER A 276 1555 1555 1.33 LINK C PHE A 325 N MSE A 326 1555 1555 1.32 LINK C MSE A 326 N HIS A 327 1555 1555 1.32 LINK C ARG A 329 N MSE A 330 1555 1555 1.33 LINK C MSE A 330 N LEU A 331 1555 1555 1.34 LINK C LEU A 331 N MSE A 332 1555 1555 1.34 LINK C MSE A 332 N VAL A 333 1555 1555 1.34 LINK C ILE A 401 N MSE A 402 1555 1555 1.33 LINK C MSE A 402 N VAL A 403 1555 1555 1.33 LINK C GLU A 521 N MSE A 522 1555 1555 1.33 LINK C MSE A 522 N ILE A 523 1555 1555 1.33 LINK C VAL A 583 N MSE A 584 1555 1555 1.33 LINK C MSE A 584 N GLU A 585 1555 1555 1.33 LINK C THR A 641 N MSE A 642 1555 1555 1.33 LINK C MSE A 642 N LEU A 643 1555 1555 1.33 LINK OD1 ASP A 392 CA CA A 661 1555 1555 2.56 LINK OD2 ASP A 394 CA CA A 661 1555 1555 2.76 LINK OD1 ASP A 396 CA CA A 661 1555 1555 2.87 LINK O ARG A 398 CA CA A 661 1555 1555 2.67 LINK OE2 GLU A 400 CA CA A 661 1555 1555 2.80 LINK OE1 GLU A 400 CA CA A 661 1555 1555 2.70 CISPEP 1 ILE A 185 PRO A 186 0 -0.42 CRYST1 124.940 124.940 246.960 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008004 0.004621 0.000000 0.00000 SCALE2 0.000000 0.009242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004049 0.00000