data_1K3H # _entry.id 1K3H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1K3H pdb_00001k3h 10.2210/pdb1k3h/pdb RCSB RCSB014513 ? ? WWPDB D_1000014513 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1K3G '1k3g is the Minimized family (30 conformers) of oxidized cytochrome c-553 from B. pasteurii.' unspecified PDB 1C75 '1c75 is the X-ray structure of the cytochrome c-553 from B. pasteurii.' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1K3H _pdbx_database_status.recvd_initial_deposition_date 2001-10-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Banci, L.' 1 'Bertini, I.' 2 'Ciurli, S.' 3 'Dikiy, A.' 4 'Dittmer, J.' 5 'Rosato, A.' 6 'Sciara, G.' 7 'Thompsett, A.R.' 8 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'NMR solution structure, backbone mobility, and homology modeling of c-type cytochromes from gram-positive bacteria.' Chembiochem 3 299 310 2002 ? GE 1439-4227 ? ? 11933230 '10.1002/1439-7633(20020402)3:4<299::AID-CBIC299>3.0.CO;2-0' 1 'Crystal Structure of Oxidized Bacillus pasteurii cytochrome c-553 at 0.97-A Resolution' Biochemistry 39 13115 13126 2000 BICHAW US 0006-2960 0033 ? ? 10.1021/bi000402j 2 'Modulation of Bacillus pasteurii Cytochrome c553 Reduction Potential by Structural and Solution Parameters' J.Biol.Inorg.Chem. 3 371 382 1998 JJBCFA GW 0949-8257 2154 ? ? 10.1007/s007750050247 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Banci, L.' 1 ? primary 'Bertini, I.' 2 ? primary 'Ciurli, S.' 3 ? primary 'Dikiy, A.' 4 ? primary 'Dittmer, J.' 5 ? primary 'Rosato, A.' 6 ? primary 'Sciara, G.' 7 ? primary 'Thompsett, A.R.' 8 ? 1 'Benini, S.' 9 ? 1 'Gonzalez, A.' 10 ? 1 'Rypniewski, W.R.' 11 ? 1 'Wilson, K.S.' 12 ? 1 'Van Beeumen, J.J.' 13 ? 1 'Ciurli, S.' 14 ? 2 'Benini, S.' 15 ? 2 'Borsari, M.' 16 ? 2 'Ciurli, S.' 17 ? 2 'Dikiy, A.' 18 ? 2 'Lamborghini, M.' 19 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'cytochrome c-553' 7115.937 1 ? ? 'RESIDUES 22-92' ? 2 non-polymer syn 'HEME C' 618.503 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name C553 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK _entity_poly.pdbx_seq_one_letter_code_can VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ASP n 1 3 ALA n 1 4 GLU n 1 5 ALA n 1 6 VAL n 1 7 VAL n 1 8 GLN n 1 9 GLN n 1 10 LYS n 1 11 CYS n 1 12 ILE n 1 13 SER n 1 14 CYS n 1 15 HIS n 1 16 GLY n 1 17 GLY n 1 18 ASP n 1 19 LEU n 1 20 THR n 1 21 GLY n 1 22 ALA n 1 23 SER n 1 24 ALA n 1 25 PRO n 1 26 ALA n 1 27 ILE n 1 28 ASP n 1 29 LYS n 1 30 ALA n 1 31 GLY n 1 32 ALA n 1 33 ASN n 1 34 TYR n 1 35 SER n 1 36 GLU n 1 37 GLU n 1 38 GLU n 1 39 ILE n 1 40 LEU n 1 41 ASP n 1 42 ILE n 1 43 ILE n 1 44 LEU n 1 45 ASN n 1 46 GLY n 1 47 GLN n 1 48 GLY n 1 49 GLY n 1 50 MET n 1 51 PRO n 1 52 GLY n 1 53 GLY n 1 54 ILE n 1 55 ALA n 1 56 LYS n 1 57 GLY n 1 58 ALA n 1 59 GLU n 1 60 ALA n 1 61 GLU n 1 62 ALA n 1 63 VAL n 1 64 ALA n 1 65 ALA n 1 66 TRP n 1 67 LEU n 1 68 ALA n 1 69 GLU n 1 70 LYS n 1 71 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sporosarcina _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sporosarcina pasteurii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1474 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5alpha _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pEC86 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CY553_BACPA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_accession P82599 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1K3H _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 71 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P82599 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 92 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 92 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEC non-polymer . 'HEME C' ? 'C34 H34 Fe N4 O4' 618.503 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 HNHA 3 1 1 '1D NOE' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 288 _pdbx_nmr_exptl_sample_conditions.pressure Ambient _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10 mM phosphate buffer' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1-3 mM oxidized cytochrome c-553 in 10 mM phosphate buffer' _pdbx_nmr_sample_details.solvent_system ;90%H2O+10%D2O; 100% D2O ; # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker AVANCE 800 2 ? Bruker AVANCE 700 3 ? Bruker AVANCE 600 # _pdbx_nmr_refine.entry_id 1K3H _pdbx_nmr_refine.method 'torsion angle dynamics, restrained energy minimization' _pdbx_nmr_refine.details ;PSEUDOCONTACT SHIFTS WERE INCLUDED AS CONSTRAINTS BY MEANS OF MODIFIED DYANA AND SANDER MODULES (PSEUDODYANA, PSEUDOREM) (BANCI ET AL., 1997) ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1K3H _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 processing Bruker 1 XEASY 1.3.13 'data analysis' Xia 2 DYANA 1.5 'structure solution' Guentert 3 Amber 5.0 refinement Kollman 4 # _exptl.entry_id 1K3H _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1K3H _struct.title 'NMR Solution Structure of Oxidized Cytochrome c-553 from Bacillus pasteurii' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1K3H _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'C-553, HEME, CYTOCHROME, BACILLUS PASTEURII, electron transfer, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 2 ? GLN A 9 ? ASP A 23 GLN A 30 1 ? 8 HELX_P HELX_P2 2 CYS A 11 ? GLY A 16 ? CYS A 32 GLY A 37 1 ? 6 HELX_P HELX_P3 3 LYS A 29 ? TYR A 34 ? LYS A 50 TYR A 55 1 ? 6 HELX_P HELX_P4 4 SER A 35 ? GLY A 46 ? SER A 56 GLY A 67 1 ? 12 HELX_P HELX_P5 5 GLY A 57 ? LYS A 70 ? GLY A 78 LYS A 91 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 11 SG ? ? ? 1_555 B HEC . CAB ? ? A CYS 32 A HEC 93 1_555 ? ? ? ? ? ? ? 1.803 ? ? covale2 covale none ? A CYS 14 SG ? ? ? 1_555 B HEC . CAC ? ? A CYS 35 A HEC 93 1_555 ? ? ? ? ? ? ? 1.813 ? ? metalc1 metalc ? ? A HIS 15 NE2 ? ? ? 1_555 B HEC . FE ? ? A HIS 36 A HEC 93 1_555 ? ? ? ? ? ? ? 1.968 ? ? metalc2 metalc ? ? A MET 50 SD ? ? ? 1_555 B HEC . FE ? ? A MET 71 A HEC 93 1_555 ? ? ? ? ? ? ? 2.405 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id HEC _struct_site.pdbx_auth_seq_id 93 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 17 _struct_site.details 'BINDING SITE FOR RESIDUE HEC A 93' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 LYS A 10 ? LYS A 31 . ? 1_555 ? 2 AC1 17 CYS A 11 ? CYS A 32 . ? 1_555 ? 3 AC1 17 CYS A 14 ? CYS A 35 . ? 1_555 ? 4 AC1 17 HIS A 15 ? HIS A 36 . ? 1_555 ? 5 AC1 17 ALA A 24 ? ALA A 45 . ? 1_555 ? 6 AC1 17 PRO A 25 ? PRO A 46 . ? 1_555 ? 7 AC1 17 ILE A 27 ? ILE A 48 . ? 1_555 ? 8 AC1 17 TYR A 34 ? TYR A 55 . ? 1_555 ? 9 AC1 17 ILE A 42 ? ILE A 63 . ? 1_555 ? 10 AC1 17 ILE A 43 ? ILE A 64 . ? 1_555 ? 11 AC1 17 GLN A 47 ? GLN A 68 . ? 1_555 ? 12 AC1 17 GLY A 48 ? GLY A 69 . ? 1_555 ? 13 AC1 17 GLY A 49 ? GLY A 70 . ? 1_555 ? 14 AC1 17 MET A 50 ? MET A 71 . ? 1_555 ? 15 AC1 17 ILE A 54 ? ILE A 75 . ? 1_555 ? 16 AC1 17 VAL A 63 ? VAL A 84 . ? 1_555 ? 17 AC1 17 LEU A 67 ? LEU A 88 . ? 1_555 ? # _database_PDB_matrix.entry_id 1K3H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1K3H _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 22 22 VAL VAL A . n A 1 2 ASP 2 23 23 ASP ASP A . n A 1 3 ALA 3 24 24 ALA ALA A . n A 1 4 GLU 4 25 25 GLU GLU A . n A 1 5 ALA 5 26 26 ALA ALA A . n A 1 6 VAL 6 27 27 VAL VAL A . n A 1 7 VAL 7 28 28 VAL VAL A . n A 1 8 GLN 8 29 29 GLN GLN A . n A 1 9 GLN 9 30 30 GLN GLN A . n A 1 10 LYS 10 31 31 LYS LYS A . n A 1 11 CYS 11 32 32 CYS CYS A . n A 1 12 ILE 12 33 33 ILE ILE A . n A 1 13 SER 13 34 34 SER SER A . n A 1 14 CYS 14 35 35 CYS CYS A . n A 1 15 HIS 15 36 36 HIS HIS A . n A 1 16 GLY 16 37 37 GLY GLY A . n A 1 17 GLY 17 38 38 GLY GLY A . n A 1 18 ASP 18 39 39 ASP ASP A . n A 1 19 LEU 19 40 40 LEU LEU A . n A 1 20 THR 20 41 41 THR THR A . n A 1 21 GLY 21 42 42 GLY GLY A . n A 1 22 ALA 22 43 43 ALA ALA A . n A 1 23 SER 23 44 44 SER SER A . n A 1 24 ALA 24 45 45 ALA ALA A . n A 1 25 PRO 25 46 46 PRO PRO A . n A 1 26 ALA 26 47 47 ALA ALA A . n A 1 27 ILE 27 48 48 ILE ILE A . n A 1 28 ASP 28 49 49 ASP ASP A . n A 1 29 LYS 29 50 50 LYS LYS A . n A 1 30 ALA 30 51 51 ALA ALA A . n A 1 31 GLY 31 52 52 GLY GLY A . n A 1 32 ALA 32 53 53 ALA ALA A . n A 1 33 ASN 33 54 54 ASN ASN A . n A 1 34 TYR 34 55 55 TYR TYR A . n A 1 35 SER 35 56 56 SER SER A . n A 1 36 GLU 36 57 57 GLU GLU A . n A 1 37 GLU 37 58 58 GLU GLU A . n A 1 38 GLU 38 59 59 GLU GLU A . n A 1 39 ILE 39 60 60 ILE ILE A . n A 1 40 LEU 40 61 61 LEU LEU A . n A 1 41 ASP 41 62 62 ASP ASP A . n A 1 42 ILE 42 63 63 ILE ILE A . n A 1 43 ILE 43 64 64 ILE ILE A . n A 1 44 LEU 44 65 65 LEU LEU A . n A 1 45 ASN 45 66 66 ASN ASN A . n A 1 46 GLY 46 67 67 GLY GLY A . n A 1 47 GLN 47 68 68 GLN GLN A . n A 1 48 GLY 48 69 69 GLY GLY A . n A 1 49 GLY 49 70 70 GLY GLY A . n A 1 50 MET 50 71 71 MET MET A . n A 1 51 PRO 51 72 72 PRO PRO A . n A 1 52 GLY 52 73 73 GLY GLY A . n A 1 53 GLY 53 74 74 GLY GLY A . n A 1 54 ILE 54 75 75 ILE ILE A . n A 1 55 ALA 55 76 76 ALA ALA A . n A 1 56 LYS 56 77 77 LYS LYS A . n A 1 57 GLY 57 78 78 GLY GLY A . n A 1 58 ALA 58 79 79 ALA ALA A . n A 1 59 GLU 59 80 80 GLU GLU A . n A 1 60 ALA 60 81 81 ALA ALA A . n A 1 61 GLU 61 82 82 GLU GLU A . n A 1 62 ALA 62 83 83 ALA ALA A . n A 1 63 VAL 63 84 84 VAL VAL A . n A 1 64 ALA 64 85 85 ALA ALA A . n A 1 65 ALA 65 86 86 ALA ALA A . n A 1 66 TRP 66 87 87 TRP TRP A . n A 1 67 LEU 67 88 88 LEU LEU A . n A 1 68 ALA 68 89 89 ALA ALA A . n A 1 69 GLU 69 90 90 GLU GLU A . n A 1 70 LYS 70 91 91 LYS LYS A . n A 1 71 LYS 71 92 92 LYS LYS A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEC _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 93 _pdbx_nonpoly_scheme.auth_seq_num 93 _pdbx_nonpoly_scheme.pdb_mon_id HEC _pdbx_nonpoly_scheme.auth_mon_id HEC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 15 ? A HIS 36 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 NA ? B HEC . ? A HEC 93 ? 1_555 97.5 ? 2 NE2 ? A HIS 15 ? A HIS 36 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 NB ? B HEC . ? A HEC 93 ? 1_555 89.9 ? 3 NA ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 NB ? B HEC . ? A HEC 93 ? 1_555 90.8 ? 4 NE2 ? A HIS 15 ? A HIS 36 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 NC ? B HEC . ? A HEC 93 ? 1_555 86.9 ? 5 NA ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 NC ? B HEC . ? A HEC 93 ? 1_555 173.9 ? 6 NB ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 NC ? B HEC . ? A HEC 93 ? 1_555 93.4 ? 7 NE2 ? A HIS 15 ? A HIS 36 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 ND ? B HEC . ? A HEC 93 ? 1_555 88.7 ? 8 NA ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 ND ? B HEC . ? A HEC 93 ? 1_555 88.1 ? 9 NB ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 ND ? B HEC . ? A HEC 93 ? 1_555 178.2 ? 10 NC ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 ND ? B HEC . ? A HEC 93 ? 1_555 87.8 ? 11 NE2 ? A HIS 15 ? A HIS 36 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 SD ? A MET 50 ? A MET 71 ? 1_555 172.3 ? 12 NA ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 SD ? A MET 50 ? A MET 71 ? 1_555 81.6 ? 13 NB ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 SD ? A MET 50 ? A MET 71 ? 1_555 97.7 ? 14 NC ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 SD ? A MET 50 ? A MET 71 ? 1_555 93.4 ? 15 ND ? B HEC . ? A HEC 93 ? 1_555 FE ? B HEC . ? A HEC 93 ? 1_555 SD ? A MET 50 ? A MET 71 ? 1_555 83.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-10-31 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_conn_type 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_conn.conn_type_id' 6 4 'Structure model' '_struct_conn.id' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn_type.id' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 31 ? ? -161.62 -43.08 2 1 SER A 34 ? ? -39.76 -37.84 3 1 ALA A 43 ? ? -165.12 -82.34 4 1 GLN A 68 ? ? 175.33 130.03 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'HEME C' _pdbx_entity_nonpoly.comp_id HEC #