data_1K61 # _entry.id 1K61 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1K61 pdb_00001k61 10.2210/pdb1k61/pdb NDB PD0257 ? ? RCSB RCSB014604 ? ? WWPDB D_1000014604 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1APL 'CRYSTAL STRUCTURE OF A MATALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS' unspecified PDB 1YRN 'MAT A1/ALPHA2/DNA TERNARY COMPLEX (HOMEODOMAIN)' unspecified PDB 1MNM 'YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1K61 _pdbx_database_status.recvd_initial_deposition_date 2001-10-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aishima, J.' 1 'Gitti, R.K.' 2 'Noah, J.E.' 3 'Gan, H.H.' 4 'Schlick, T.' 5 'Wolberger, C.' 6 # _citation.id primary _citation.title 'A Hoogsteen base pair embedded in undistorted B-DNA' _citation.journal_abbrev 'NUCLEIC ACIDS RES.' _citation.journal_volume 30 _citation.page_first 5244 _citation.page_last 5252 _citation.year 2002 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12466549 _citation.pdbx_database_id_DOI 10.1093/nar/gkf661 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Aishima, J.' 1 ? primary 'Gitti, R.K.' 2 ? primary 'Noah, J.E.' 3 ? primary 'Gan, H.H.' 4 ? primary 'Schlick, T.' 5 ? primary 'Wolberger, C.' 6 ? # _cell.entry_id 1K61 _cell.length_a 38.940 _cell.length_b 70.240 _cell.length_c 68.290 _cell.angle_alpha 90.00 _cell.angle_beta 105.42 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K61 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*CP*AP*TP*TP*TP*AP*CP*AP*CP*GP*C)-3'" 6381.160 1 ? ? ? ? 2 polymer syn "5'-D(*(5IU)P*GP*CP*GP*TP*GP*TP*AP*AP*AP*TP*GP*AP*AP*TP*TP*AP*CP*AP*TP*G)-3'" 6613.103 1 ? ? ? ? 3 polymer syn 'Mating-type protein alpha-2' 7275.384 4 ? ? 'RESIDUES 132-191, HOMEODOMAIN' ? 4 water nat water 18.015 195 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Alpha-2 repressor' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DA)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DT)(DC)(DA)(DT)(DT)(DT)(DA)(DC)(DA)(DC)(DG) (DC) ; ACATGTAATTCATTTACACGC E ? 2 polydeoxyribonucleotide no yes ;(5IU)(DG)(DC)(DG)(DT)(DG)(DT)(DA)(DA)(DA)(DT)(DG)(DA)(DA)(DT)(DT)(DA)(DC)(DA) (DT)(DG) ; UGCGTGTAAATGAATTACATG F ? 3 'polypeptide(L)' no no RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTIT RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTIT A,B,C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DA n 1 4 DT n 1 5 DG n 1 6 DT n 1 7 DA n 1 8 DA n 1 9 DT n 1 10 DT n 1 11 DC n 1 12 DA n 1 13 DT n 1 14 DT n 1 15 DT n 1 16 DA n 1 17 DC n 1 18 DA n 1 19 DC n 1 20 DG n 1 21 DC n 2 1 5IU n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DT n 2 6 DG n 2 7 DT n 2 8 DA n 2 9 DA n 2 10 DA n 2 11 DT n 2 12 DG n 2 13 DA n 2 14 DA n 2 15 DT n 2 16 DT n 2 17 DA n 2 18 DC n 2 19 DA n 2 20 DT n 2 21 DG n 3 1 ARG n 3 2 GLY n 3 3 HIS n 3 4 ARG n 3 5 PHE n 3 6 THR n 3 7 LYS n 3 8 GLU n 3 9 ASN n 3 10 VAL n 3 11 ARG n 3 12 ILE n 3 13 LEU n 3 14 GLU n 3 15 SER n 3 16 TRP n 3 17 PHE n 3 18 ALA n 3 19 LYS n 3 20 ASN n 3 21 ILE n 3 22 GLU n 3 23 ASN n 3 24 PRO n 3 25 TYR n 3 26 LEU n 3 27 ASP n 3 28 THR n 3 29 LYS n 3 30 GLY n 3 31 LEU n 3 32 GLU n 3 33 ASN n 3 34 LEU n 3 35 MET n 3 36 LYS n 3 37 ASN n 3 38 THR n 3 39 SER n 3 40 LEU n 3 41 SER n 3 42 ARG n 3 43 ILE n 3 44 GLN n 3 45 ILE n 3 46 LYS n 3 47 ASN n 3 48 TRP n 3 49 VAL n 3 50 SER n 3 51 ASN n 3 52 ARG n 3 53 ARG n 3 54 ARG n 3 55 LYS n 3 56 GLU n 3 57 LYS n 3 58 THR n 3 59 ILE n 3 60 THR n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence is derived from the STE6 promoter region, with the MCM1 binding sites removed.' 2 1 sample ? ? ? ? ? 'This sequence is derived from the STE6 promoter region, with the MCM1 binding sites removed.' 3 1 sample ? ? ? ? ? 'The sequence naturally occurs in yeast. The protein was synthesized by the FMOC method.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP MAT2_YEAST 3 ;MNKIPIKDLLNPQITDEFKSSILDINKKLFSICCNLPKLPESVTTEEEVELRDILGFLSRANKNRKISDEEKKLLQTTSQ LTTTITVLLKEMRSIENDRSNYQLTQKNKSADGLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTK GLENLMKNTSLSRIQIKNWVSNRRRKEKTITIAPELADLLSGEPLAKKKE ; 1 P01367 ? 2 PDB 1K61 1 ? ? 1K61 ? 3 PDB 1K61 2 ? ? 1K61 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1K61 A 1 ? 60 ? P01367 132 ? 191 ? 132 191 2 1 1K61 B 1 ? 60 ? P01367 132 ? 191 ? 132 191 3 1 1K61 C 1 ? 60 ? P01367 132 ? 191 ? 132 191 4 1 1K61 D 1 ? 60 ? P01367 132 ? 191 ? 132 191 5 2 1K61 E 1 ? 21 ? 1K61 1 ? 21 ? 1 21 6 3 1K61 F 1 ? 21 ? 1K61 22 ? 42 ? 22 42 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5IU 'DNA linking' n "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 I N2 O8 P' 434.078 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1K61 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_percent_sol 41.2 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details 'PEG 6000, Bicine, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 6000' ? ? ? 1 2 1 Bicine ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 1998-06-24 _diffrn_detector.details 'Yale mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'YALE MIRRORS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1K61 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 16 _reflns.d_resolution_high 2.0 _reflns.number_obs 23014 _reflns.number_all 23364 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14 _reflns.B_iso_Wilson_estimate 33.8 _reflns.pdbx_redundancy 2.07 _reflns.R_free_details ? _reflns.limit_k_min ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 81 _reflns_shell.Rmerge_I_obs 0.287 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2897 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1K61 _refine.ls_number_reflns_obs 20065 _refine.ls_number_reflns_all 20799 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 23852424.02 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 16.01 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 96.6 _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.277 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1976 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 35.7 _refine.aniso_B[1][1] 7.33 _refine.aniso_B[2][2] -1.09 _refine.aniso_B[3][3] -6.23 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 4.57 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.327842 _refine.solvent_model_param_bsol 44.8193 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Refinement Target values for the DNA as described in: G.Parkinson, J.Vojtechovsky, L.Clowney, A.T.Brunger, H.M.Berman, New Parameters for the Refinement of Nucleic Acid Containing Structures, Acta Cryst. D, 52, 57-64 (1996). Modified for 5-iodouracil residue. ; _refine.pdbx_starting_model 'PDB ENTRY 1APL' _refine.pdbx_method_to_determine_struct 'MIR and molecular replacement' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1K61 _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.21 _refine_analyze.Luzzati_d_res_low_obs 20.00 _refine_analyze.Luzzati_coordinate_error_free 0.38 _refine_analyze.Luzzati_sigma_a_free 0.33 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1911 _refine_hist.pdbx_number_atoms_nucleic_acid 854 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 195 _refine_hist.number_atoms_total 2961 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 16.01 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 17.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.11 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.40 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.19 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.93 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.71 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 2921 _refine_ls_shell.R_factor_R_work 0.26 _refine_ls_shell.percent_reflns_obs 93.3 _refine_ls_shell.R_factor_R_free 0.348 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 9.7 _refine_ls_shell.number_reflns_R_free 312 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 I_DNA-RNA.PARAM I_DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1K61 _struct.title 'MATALPHA2 HOMEODOMAIN BOUND TO DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1K61 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, HOMEODOMAIN, HOOGSTEEN BASE PAIR, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 6 ? ASN C 20 ? THR A 137 ASN A 151 1 ? 15 HELX_P HELX_P2 2 ASP C 27 ? SER C 39 ? ASP A 158 SER A 170 1 ? 13 HELX_P HELX_P3 3 SER C 41 ? THR C 58 ? SER A 172 THR A 189 1 ? 18 HELX_P HELX_P4 4 THR D 6 ? ASN D 20 ? THR B 137 ASN B 151 1 ? 15 HELX_P HELX_P5 5 ASP D 27 ? SER D 39 ? ASP B 158 SER B 170 1 ? 13 HELX_P HELX_P6 6 SER D 41 ? LYS D 57 ? SER B 172 LYS B 188 1 ? 17 HELX_P HELX_P7 7 THR E 6 ? ASN E 20 ? THR C 137 ASN C 151 1 ? 15 HELX_P HELX_P8 8 ASP E 27 ? SER E 39 ? ASP C 158 SER C 170 1 ? 13 HELX_P HELX_P9 9 SER E 41 ? THR E 58 ? SER C 172 THR C 189 1 ? 18 HELX_P HELX_P10 10 THR F 6 ? ASN F 20 ? THR D 137 ASN D 151 1 ? 15 HELX_P HELX_P11 11 ASP F 27 ? SER F 39 ? ASP D 158 SER D 170 1 ? 13 HELX_P HELX_P12 12 SER F 41 ? GLU F 56 ? SER D 172 GLU D 187 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B 5IU 1 "O3'" ? ? ? 1_555 B DG 2 P ? ? F 5IU 22 F DG 23 1_555 ? ? ? ? ? ? ? 1.603 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 21 N1 ? ? E DC 2 F DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 21 O6 ? ? E DC 2 F DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 21 N2 ? ? E DC 2 F DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 20 N3 ? ? E DA 3 F DT 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 20 O4 ? ? E DA 3 F DT 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? E DT 4 F DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? E DT 4 F DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? E DG 5 F DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? E DG 5 F DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? E DG 5 F DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 17 N1 ? ? E DT 6 F DA 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 17 N6 ? ? E DT 6 F DA 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 16 O4 ? ? E DA 7 F DT 37 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog14 hydrog ? ? A DA 7 N7 ? ? ? 1_555 B DT 16 N3 ? ? E DA 7 F DT 37 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog15 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 15 N3 ? ? E DA 8 F DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 15 O4 ? ? E DA 8 F DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 14 N1 ? ? E DT 9 F DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 14 N6 ? ? E DT 9 F DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 13 N1 ? ? E DT 10 F DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 13 N6 ? ? E DT 10 F DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 12 N1 ? ? E DC 11 F DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 12 O6 ? ? E DC 11 F DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 12 N2 ? ? E DC 11 F DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 11 N3 ? ? E DA 12 F DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 11 O4 ? ? E DA 12 F DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 10 N1 ? ? E DT 13 F DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 10 N6 ? ? E DT 13 F DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 9 N1 ? ? E DT 14 F DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 9 N6 ? ? E DT 14 F DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 8 N1 ? ? E DT 15 F DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 8 N6 ? ? E DT 15 F DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 7 N3 ? ? E DA 16 F DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 7 O4 ? ? E DA 16 F DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? E DC 17 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? E DC 17 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? E DC 17 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 18 N1 ? ? ? 1_555 B DT 5 N3 ? ? E DA 18 F DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 18 N6 ? ? ? 1_555 B DT 5 O4 ? ? E DA 18 F DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 19 N3 ? ? ? 1_555 B DG 4 N1 ? ? E DC 19 F DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 19 N4 ? ? ? 1_555 B DG 4 O6 ? ? E DC 19 F DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 19 O2 ? ? ? 1_555 B DG 4 N2 ? ? E DC 19 F DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 3 N3 ? ? E DG 20 F DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 3 O2 ? ? E DG 20 F DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 3 N4 ? ? E DG 20 F DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 21 N3 ? ? ? 1_555 B DG 2 N1 ? ? E DC 21 F DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DC 21 N4 ? ? ? 1_555 B DG 2 O6 ? ? E DC 21 F DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DC 21 O2 ? ? ? 1_555 B DG 2 N2 ? ? E DC 21 F DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1K61 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1K61 _atom_sites.fract_transf_matrix[1][1] 0.025681 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007083 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014237 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015190 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A E . n A 1 2 DC 2 2 2 DC C E . n A 1 3 DA 3 3 3 DA A E . n A 1 4 DT 4 4 4 DT T E . n A 1 5 DG 5 5 5 DG G E . n A 1 6 DT 6 6 6 DT T E . n A 1 7 DA 7 7 7 DA A E . n A 1 8 DA 8 8 8 DA A E . n A 1 9 DT 9 9 9 DT T E . n A 1 10 DT 10 10 10 DT T E . n A 1 11 DC 11 11 11 DC C E . n A 1 12 DA 12 12 12 DA A E . n A 1 13 DT 13 13 13 DT T E . n A 1 14 DT 14 14 14 DT T E . n A 1 15 DT 15 15 15 DT T E . n A 1 16 DA 16 16 16 DA A E . n A 1 17 DC 17 17 17 DC C E . n A 1 18 DA 18 18 18 DA A E . n A 1 19 DC 19 19 19 DC C E . n A 1 20 DG 20 20 20 DG G E . n A 1 21 DC 21 21 21 DC C E . n B 2 1 5IU 1 22 22 5IU +U F . n B 2 2 DG 2 23 23 DG G F . n B 2 3 DC 3 24 24 DC C F . n B 2 4 DG 4 25 25 DG G F . n B 2 5 DT 5 26 26 DT T F . n B 2 6 DG 6 27 27 DG G F . n B 2 7 DT 7 28 28 DT T F . n B 2 8 DA 8 29 29 DA A F . n B 2 9 DA 9 30 30 DA A F . n B 2 10 DA 10 31 31 DA A F . n B 2 11 DT 11 32 32 DT T F . n B 2 12 DG 12 33 33 DG G F . n B 2 13 DA 13 34 34 DA A F . n B 2 14 DA 14 35 35 DA A F . n B 2 15 DT 15 36 36 DT T F . n B 2 16 DT 16 37 37 DT T F . n B 2 17 DA 17 38 38 DA A F . n B 2 18 DC 18 39 39 DC C F . n B 2 19 DA 19 40 40 DA A F . n B 2 20 DT 20 41 41 DT T F . n B 2 21 DG 21 42 42 DG G F . n C 3 1 ARG 1 132 132 ARG ARG A . n C 3 2 GLY 2 133 133 GLY GLY A . n C 3 3 HIS 3 134 134 HIS HIS A . n C 3 4 ARG 4 135 135 ARG ARG A . n C 3 5 PHE 5 136 136 PHE PHE A . n C 3 6 THR 6 137 137 THR THR A . n C 3 7 LYS 7 138 138 LYS LYS A . n C 3 8 GLU 8 139 139 GLU GLU A . n C 3 9 ASN 9 140 140 ASN ASN A . n C 3 10 VAL 10 141 141 VAL VAL A . n C 3 11 ARG 11 142 142 ARG ARG A . n C 3 12 ILE 12 143 143 ILE ILE A . n C 3 13 LEU 13 144 144 LEU LEU A . n C 3 14 GLU 14 145 145 GLU GLU A . n C 3 15 SER 15 146 146 SER SER A . n C 3 16 TRP 16 147 147 TRP TRP A . n C 3 17 PHE 17 148 148 PHE PHE A . n C 3 18 ALA 18 149 149 ALA ALA A . n C 3 19 LYS 19 150 150 LYS LYS A . n C 3 20 ASN 20 151 151 ASN ASN A . n C 3 21 ILE 21 152 152 ILE ILE A . n C 3 22 GLU 22 153 153 GLU GLU A . n C 3 23 ASN 23 154 154 ASN ASN A . n C 3 24 PRO 24 155 155 PRO PRO A . n C 3 25 TYR 25 156 156 TYR TYR A . n C 3 26 LEU 26 157 157 LEU LEU A . n C 3 27 ASP 27 158 158 ASP ASP A . n C 3 28 THR 28 159 159 THR THR A . n C 3 29 LYS 29 160 160 LYS LYS A . n C 3 30 GLY 30 161 161 GLY GLY A . n C 3 31 LEU 31 162 162 LEU LEU A . n C 3 32 GLU 32 163 163 GLU GLU A . n C 3 33 ASN 33 164 164 ASN ASN A . n C 3 34 LEU 34 165 165 LEU LEU A . n C 3 35 MET 35 166 166 MET MET A . n C 3 36 LYS 36 167 167 LYS LYS A . n C 3 37 ASN 37 168 168 ASN ASN A . n C 3 38 THR 38 169 169 THR THR A . n C 3 39 SER 39 170 170 SER SER A . n C 3 40 LEU 40 171 171 LEU LEU A . n C 3 41 SER 41 172 172 SER SER A . n C 3 42 ARG 42 173 173 ARG ARG A . n C 3 43 ILE 43 174 174 ILE ILE A . n C 3 44 GLN 44 175 175 GLN GLN A . n C 3 45 ILE 45 176 176 ILE ILE A . n C 3 46 LYS 46 177 177 LYS LYS A . n C 3 47 ASN 47 178 178 ASN ASN A . n C 3 48 TRP 48 179 179 TRP TRP A . n C 3 49 VAL 49 180 180 VAL VAL A . n C 3 50 SER 50 181 181 SER SER A . n C 3 51 ASN 51 182 182 ASN ASN A . n C 3 52 ARG 52 183 183 ARG ARG A . n C 3 53 ARG 53 184 184 ARG ARG A . n C 3 54 ARG 54 185 185 ARG ARG A . n C 3 55 LYS 55 186 186 LYS LYS A . n C 3 56 GLU 56 187 187 GLU GLU A . n C 3 57 LYS 57 188 188 LYS LYS A . n C 3 58 THR 58 189 189 THR THR A . n C 3 59 ILE 59 190 190 ILE ILE A . n C 3 60 THR 60 191 191 THR THR A . n D 3 1 ARG 1 132 132 ARG ARG B . n D 3 2 GLY 2 133 133 GLY GLY B . n D 3 3 HIS 3 134 134 HIS HIS B . n D 3 4 ARG 4 135 135 ARG ARG B . n D 3 5 PHE 5 136 136 PHE PHE B . n D 3 6 THR 6 137 137 THR THR B . n D 3 7 LYS 7 138 138 LYS LYS B . n D 3 8 GLU 8 139 139 GLU GLU B . n D 3 9 ASN 9 140 140 ASN ASN B . n D 3 10 VAL 10 141 141 VAL VAL B . n D 3 11 ARG 11 142 142 ARG ARG B . n D 3 12 ILE 12 143 143 ILE ILE B . n D 3 13 LEU 13 144 144 LEU LEU B . n D 3 14 GLU 14 145 145 GLU GLU B . n D 3 15 SER 15 146 146 SER SER B . n D 3 16 TRP 16 147 147 TRP TRP B . n D 3 17 PHE 17 148 148 PHE PHE B . n D 3 18 ALA 18 149 149 ALA ALA B . n D 3 19 LYS 19 150 150 LYS LYS B . n D 3 20 ASN 20 151 151 ASN ASN B . n D 3 21 ILE 21 152 152 ILE ILE B . n D 3 22 GLU 22 153 153 GLU GLU B . n D 3 23 ASN 23 154 154 ASN ASN B . n D 3 24 PRO 24 155 155 PRO PRO B . n D 3 25 TYR 25 156 156 TYR TYR B . n D 3 26 LEU 26 157 157 LEU LEU B . n D 3 27 ASP 27 158 158 ASP ASP B . n D 3 28 THR 28 159 159 THR THR B . n D 3 29 LYS 29 160 160 LYS LYS B . n D 3 30 GLY 30 161 161 GLY GLY B . n D 3 31 LEU 31 162 162 LEU LEU B . n D 3 32 GLU 32 163 163 GLU GLU B . n D 3 33 ASN 33 164 164 ASN ASN B . n D 3 34 LEU 34 165 165 LEU LEU B . n D 3 35 MET 35 166 166 MET MET B . n D 3 36 LYS 36 167 167 LYS LYS B . n D 3 37 ASN 37 168 168 ASN ASN B . n D 3 38 THR 38 169 169 THR THR B . n D 3 39 SER 39 170 170 SER SER B . n D 3 40 LEU 40 171 171 LEU LEU B . n D 3 41 SER 41 172 172 SER SER B . n D 3 42 ARG 42 173 173 ARG ARG B . n D 3 43 ILE 43 174 174 ILE ILE B . n D 3 44 GLN 44 175 175 GLN GLN B . n D 3 45 ILE 45 176 176 ILE ILE B . n D 3 46 LYS 46 177 177 LYS LYS B . n D 3 47 ASN 47 178 178 ASN ASN B . n D 3 48 TRP 48 179 179 TRP TRP B . n D 3 49 VAL 49 180 180 VAL VAL B . n D 3 50 SER 50 181 181 SER SER B . n D 3 51 ASN 51 182 182 ASN ASN B . n D 3 52 ARG 52 183 183 ARG ARG B . n D 3 53 ARG 53 184 184 ARG ARG B . n D 3 54 ARG 54 185 185 ARG ARG B . n D 3 55 LYS 55 186 186 LYS LYS B . n D 3 56 GLU 56 187 187 GLU GLU B . n D 3 57 LYS 57 188 188 LYS LYS B . n D 3 58 THR 58 189 189 THR THR B . n D 3 59 ILE 59 190 190 ILE ILE B . n D 3 60 THR 60 191 ? ? ? B . n E 3 1 ARG 1 132 ? ? ? C . n E 3 2 GLY 2 133 ? ? ? C . n E 3 3 HIS 3 134 134 HIS HIS C . n E 3 4 ARG 4 135 135 ARG ARG C . n E 3 5 PHE 5 136 136 PHE PHE C . n E 3 6 THR 6 137 137 THR THR C . n E 3 7 LYS 7 138 138 LYS LYS C . n E 3 8 GLU 8 139 139 GLU GLU C . n E 3 9 ASN 9 140 140 ASN ASN C . n E 3 10 VAL 10 141 141 VAL VAL C . n E 3 11 ARG 11 142 142 ARG ARG C . n E 3 12 ILE 12 143 143 ILE ILE C . n E 3 13 LEU 13 144 144 LEU LEU C . n E 3 14 GLU 14 145 145 GLU GLU C . n E 3 15 SER 15 146 146 SER SER C . n E 3 16 TRP 16 147 147 TRP TRP C . n E 3 17 PHE 17 148 148 PHE PHE C . n E 3 18 ALA 18 149 149 ALA ALA C . n E 3 19 LYS 19 150 150 LYS LYS C . n E 3 20 ASN 20 151 151 ASN ASN C . n E 3 21 ILE 21 152 152 ILE ILE C . n E 3 22 GLU 22 153 153 GLU GLU C . n E 3 23 ASN 23 154 154 ASN ASN C . n E 3 24 PRO 24 155 155 PRO PRO C . n E 3 25 TYR 25 156 156 TYR TYR C . n E 3 26 LEU 26 157 157 LEU LEU C . n E 3 27 ASP 27 158 158 ASP ASP C . n E 3 28 THR 28 159 159 THR THR C . n E 3 29 LYS 29 160 160 LYS LYS C . n E 3 30 GLY 30 161 161 GLY GLY C . n E 3 31 LEU 31 162 162 LEU LEU C . n E 3 32 GLU 32 163 163 GLU GLU C . n E 3 33 ASN 33 164 164 ASN ASN C . n E 3 34 LEU 34 165 165 LEU LEU C . n E 3 35 MET 35 166 166 MET MET C . n E 3 36 LYS 36 167 167 LYS LYS C . n E 3 37 ASN 37 168 168 ASN ASN C . n E 3 38 THR 38 169 169 THR THR C . n E 3 39 SER 39 170 170 SER SER C . n E 3 40 LEU 40 171 171 LEU LEU C . n E 3 41 SER 41 172 172 SER SER C . n E 3 42 ARG 42 173 173 ARG ARG C . n E 3 43 ILE 43 174 174 ILE ILE C . n E 3 44 GLN 44 175 175 GLN GLN C . n E 3 45 ILE 45 176 176 ILE ILE C . n E 3 46 LYS 46 177 177 LYS LYS C . n E 3 47 ASN 47 178 178 ASN ASN C . n E 3 48 TRP 48 179 179 TRP TRP C . n E 3 49 VAL 49 180 180 VAL VAL C . n E 3 50 SER 50 181 181 SER SER C . n E 3 51 ASN 51 182 182 ASN ASN C . n E 3 52 ARG 52 183 183 ARG ARG C . n E 3 53 ARG 53 184 184 ARG ARG C . n E 3 54 ARG 54 185 185 ARG ARG C . n E 3 55 LYS 55 186 186 LYS LYS C . n E 3 56 GLU 56 187 187 GLU GLU C . n E 3 57 LYS 57 188 188 LYS LYS C . n E 3 58 THR 58 189 189 THR THR C . n E 3 59 ILE 59 190 ? ? ? C . n E 3 60 THR 60 191 ? ? ? C . n F 3 1 ARG 1 132 132 ARG ARG D . n F 3 2 GLY 2 133 133 GLY GLY D . n F 3 3 HIS 3 134 134 HIS HIS D . n F 3 4 ARG 4 135 135 ARG ARG D . n F 3 5 PHE 5 136 136 PHE PHE D . n F 3 6 THR 6 137 137 THR THR D . n F 3 7 LYS 7 138 138 LYS LYS D . n F 3 8 GLU 8 139 139 GLU GLU D . n F 3 9 ASN 9 140 140 ASN ASN D . n F 3 10 VAL 10 141 141 VAL VAL D . n F 3 11 ARG 11 142 142 ARG ARG D . n F 3 12 ILE 12 143 143 ILE ILE D . n F 3 13 LEU 13 144 144 LEU LEU D . n F 3 14 GLU 14 145 145 GLU GLU D . n F 3 15 SER 15 146 146 SER SER D . n F 3 16 TRP 16 147 147 TRP TRP D . n F 3 17 PHE 17 148 148 PHE PHE D . n F 3 18 ALA 18 149 149 ALA ALA D . n F 3 19 LYS 19 150 150 LYS LYS D . n F 3 20 ASN 20 151 151 ASN ASN D . n F 3 21 ILE 21 152 152 ILE ILE D . n F 3 22 GLU 22 153 153 GLU GLU D . n F 3 23 ASN 23 154 154 ASN ASN D . n F 3 24 PRO 24 155 155 PRO PRO D . n F 3 25 TYR 25 156 156 TYR TYR D . n F 3 26 LEU 26 157 157 LEU LEU D . n F 3 27 ASP 27 158 158 ASP ASP D . n F 3 28 THR 28 159 159 THR THR D . n F 3 29 LYS 29 160 160 LYS LYS D . n F 3 30 GLY 30 161 161 GLY GLY D . n F 3 31 LEU 31 162 162 LEU LEU D . n F 3 32 GLU 32 163 163 GLU GLU D . n F 3 33 ASN 33 164 164 ASN ASN D . n F 3 34 LEU 34 165 165 LEU LEU D . n F 3 35 MET 35 166 166 MET MET D . n F 3 36 LYS 36 167 167 LYS LYS D . n F 3 37 ASN 37 168 168 ASN ASN D . n F 3 38 THR 38 169 169 THR THR D . n F 3 39 SER 39 170 170 SER SER D . n F 3 40 LEU 40 171 171 LEU LEU D . n F 3 41 SER 41 172 172 SER SER D . n F 3 42 ARG 42 173 173 ARG ARG D . n F 3 43 ILE 43 174 174 ILE ILE D . n F 3 44 GLN 44 175 175 GLN GLN D . n F 3 45 ILE 45 176 176 ILE ILE D . n F 3 46 LYS 46 177 177 LYS LYS D . n F 3 47 ASN 47 178 178 ASN ASN D . n F 3 48 TRP 48 179 179 TRP TRP D . n F 3 49 VAL 49 180 180 VAL VAL D . n F 3 50 SER 50 181 181 SER SER D . n F 3 51 ASN 51 182 182 ASN ASN D . n F 3 52 ARG 52 183 183 ARG ARG D . n F 3 53 ARG 53 184 184 ARG ARG D . n F 3 54 ARG 54 185 185 ARG ARG D . n F 3 55 LYS 55 186 186 LYS LYS D . n F 3 56 GLU 56 187 187 GLU GLU D . n F 3 57 LYS 57 188 188 LYS LYS D . n F 3 58 THR 58 189 189 THR THR D . n F 3 59 ILE 59 190 ? ? ? D . n F 3 60 THR 60 191 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HOH 1 22 2 HOH TIP E . G 4 HOH 2 23 14 HOH TIP E . G 4 HOH 3 24 20 HOH TIP E . G 4 HOH 4 25 21 HOH TIP E . G 4 HOH 5 26 23 HOH TIP E . G 4 HOH 6 27 26 HOH TIP E . G 4 HOH 7 28 27 HOH TIP E . G 4 HOH 8 29 31 HOH TIP E . G 4 HOH 9 30 35 HOH TIP E . G 4 HOH 10 31 36 HOH TIP E . G 4 HOH 11 32 40 HOH TIP E . G 4 HOH 12 33 43 HOH TIP E . G 4 HOH 13 34 44 HOH TIP E . G 4 HOH 14 35 50 HOH TIP E . G 4 HOH 15 36 51 HOH TIP E . G 4 HOH 16 37 57 HOH TIP E . G 4 HOH 17 38 59 HOH TIP E . G 4 HOH 18 39 62 HOH TIP E . G 4 HOH 19 40 65 HOH TIP E . G 4 HOH 20 41 67 HOH TIP E . G 4 HOH 21 42 73 HOH TIP E . G 4 HOH 22 43 77 HOH TIP E . G 4 HOH 23 44 78 HOH TIP E . G 4 HOH 24 45 82 HOH TIP E . G 4 HOH 25 46 86 HOH TIP E . G 4 HOH 26 47 90 HOH TIP E . G 4 HOH 27 48 91 HOH TIP E . G 4 HOH 28 49 95 HOH TIP E . G 4 HOH 29 50 108 HOH TIP E . G 4 HOH 30 51 111 HOH TIP E . G 4 HOH 31 52 115 HOH TIP E . G 4 HOH 32 53 121 HOH TIP E . G 4 HOH 33 54 123 HOH TIP E . G 4 HOH 34 55 126 HOH TIP E . G 4 HOH 35 56 136 HOH TIP E . G 4 HOH 36 57 148 HOH TIP E . G 4 HOH 37 58 154 HOH TIP E . G 4 HOH 38 59 157 HOH TIP E . G 4 HOH 39 60 163 HOH TIP E . G 4 HOH 40 61 165 HOH TIP E . G 4 HOH 41 62 167 HOH TIP E . G 4 HOH 42 63 171 HOH TIP E . H 4 HOH 1 43 3 HOH TIP F . H 4 HOH 2 44 12 HOH TIP F . H 4 HOH 3 45 18 HOH TIP F . H 4 HOH 4 46 29 HOH TIP F . H 4 HOH 5 47 30 HOH TIP F . H 4 HOH 6 48 32 HOH TIP F . H 4 HOH 7 49 37 HOH TIP F . H 4 HOH 8 50 38 HOH TIP F . H 4 HOH 9 51 47 HOH TIP F . H 4 HOH 10 52 58 HOH TIP F . H 4 HOH 11 53 63 HOH TIP F . H 4 HOH 12 54 66 HOH TIP F . H 4 HOH 13 55 70 HOH TIP F . H 4 HOH 14 56 75 HOH TIP F . H 4 HOH 15 57 79 HOH TIP F . H 4 HOH 16 58 83 HOH TIP F . H 4 HOH 17 59 87 HOH TIP F . H 4 HOH 18 60 93 HOH TIP F . H 4 HOH 19 61 98 HOH TIP F . H 4 HOH 20 62 100 HOH TIP F . H 4 HOH 21 63 103 HOH TIP F . H 4 HOH 22 64 105 HOH TIP F . H 4 HOH 23 65 106 HOH TIP F . H 4 HOH 24 66 114 HOH TIP F . H 4 HOH 25 67 116 HOH TIP F . H 4 HOH 26 68 129 HOH TIP F . H 4 HOH 27 69 137 HOH TIP F . H 4 HOH 28 70 139 HOH TIP F . H 4 HOH 29 71 147 HOH TIP F . H 4 HOH 30 72 151 HOH TIP F . H 4 HOH 31 73 164 HOH TIP F . H 4 HOH 32 74 169 HOH TIP F . H 4 HOH 33 75 172 HOH TIP F . H 4 HOH 34 76 173 HOH TIP F . H 4 HOH 35 77 186 HOH TIP F . H 4 HOH 36 78 188 HOH TIP F . I 4 HOH 1 192 5 HOH TIP A . I 4 HOH 2 193 6 HOH TIP A . I 4 HOH 3 194 7 HOH TIP A . I 4 HOH 4 195 19 HOH TIP A . I 4 HOH 5 196 25 HOH TIP A . I 4 HOH 6 197 49 HOH TIP A . I 4 HOH 7 198 52 HOH TIP A . I 4 HOH 8 199 54 HOH TIP A . I 4 HOH 9 200 55 HOH TIP A . I 4 HOH 10 201 56 HOH TIP A . I 4 HOH 11 202 72 HOH TIP A . I 4 HOH 12 203 92 HOH TIP A . I 4 HOH 13 204 102 HOH TIP A . I 4 HOH 14 205 140 HOH TIP A . I 4 HOH 15 206 143 HOH TIP A . I 4 HOH 16 207 145 HOH TIP A . I 4 HOH 17 208 153 HOH TIP A . I 4 HOH 18 209 162 HOH TIP A . I 4 HOH 19 210 168 HOH TIP A . I 4 HOH 20 211 175 HOH TIP A . I 4 HOH 21 212 176 HOH TIP A . I 4 HOH 22 213 177 HOH TIP A . I 4 HOH 23 214 183 HOH TIP A . I 4 HOH 24 215 185 HOH TIP A . J 4 HOH 1 192 1 HOH TIP B . J 4 HOH 2 193 4 HOH TIP B . J 4 HOH 3 194 8 HOH TIP B . J 4 HOH 4 195 11 HOH TIP B . J 4 HOH 5 196 13 HOH TIP B . J 4 HOH 6 197 17 HOH TIP B . J 4 HOH 7 198 22 HOH TIP B . J 4 HOH 8 199 33 HOH TIP B . J 4 HOH 9 200 34 HOH TIP B . J 4 HOH 10 201 41 HOH TIP B . J 4 HOH 11 202 42 HOH TIP B . J 4 HOH 12 203 53 HOH TIP B . J 4 HOH 13 204 61 HOH TIP B . J 4 HOH 14 205 69 HOH TIP B . J 4 HOH 15 206 80 HOH TIP B . J 4 HOH 16 207 81 HOH TIP B . J 4 HOH 17 208 88 HOH TIP B . J 4 HOH 18 209 94 HOH TIP B . J 4 HOH 19 210 101 HOH TIP B . J 4 HOH 20 211 107 HOH TIP B . J 4 HOH 21 212 117 HOH TIP B . J 4 HOH 22 213 127 HOH TIP B . J 4 HOH 23 214 128 HOH TIP B . J 4 HOH 24 215 132 HOH TIP B . J 4 HOH 25 216 133 HOH TIP B . J 4 HOH 26 217 142 HOH TIP B . J 4 HOH 27 218 146 HOH TIP B . J 4 HOH 28 219 152 HOH TIP B . J 4 HOH 29 220 158 HOH TIP B . J 4 HOH 30 221 160 HOH TIP B . J 4 HOH 31 222 166 HOH TIP B . J 4 HOH 32 223 170 HOH TIP B . J 4 HOH 33 224 174 HOH TIP B . J 4 HOH 34 225 179 HOH TIP B . J 4 HOH 35 226 181 HOH TIP B . J 4 HOH 36 227 182 HOH TIP B . J 4 HOH 37 228 187 HOH TIP B . J 4 HOH 38 229 194 HOH TIP B . K 4 HOH 1 192 9 HOH TIP C . K 4 HOH 2 193 15 HOH TIP C . K 4 HOH 3 194 45 HOH TIP C . K 4 HOH 4 195 48 HOH TIP C . K 4 HOH 5 196 64 HOH TIP C . K 4 HOH 6 197 68 HOH TIP C . K 4 HOH 7 198 74 HOH TIP C . K 4 HOH 8 199 76 HOH TIP C . K 4 HOH 9 200 113 HOH TIP C . K 4 HOH 10 201 119 HOH TIP C . K 4 HOH 11 202 120 HOH TIP C . K 4 HOH 12 203 124 HOH TIP C . K 4 HOH 13 204 130 HOH TIP C . K 4 HOH 14 205 138 HOH TIP C . K 4 HOH 15 206 141 HOH TIP C . K 4 HOH 16 207 144 HOH TIP C . K 4 HOH 17 208 149 HOH TIP C . K 4 HOH 18 209 150 HOH TIP C . K 4 HOH 19 210 159 HOH TIP C . K 4 HOH 20 211 178 HOH TIP C . K 4 HOH 21 212 180 HOH TIP C . K 4 HOH 22 213 184 HOH TIP C . K 4 HOH 23 214 192 HOH TIP C . K 4 HOH 24 215 193 HOH TIP C . K 4 HOH 25 216 195 HOH TIP C . L 4 HOH 1 192 10 HOH TIP D . L 4 HOH 2 193 16 HOH TIP D . L 4 HOH 3 194 24 HOH TIP D . L 4 HOH 4 195 28 HOH TIP D . L 4 HOH 5 196 39 HOH TIP D . L 4 HOH 6 197 46 HOH TIP D . L 4 HOH 7 198 60 HOH TIP D . L 4 HOH 8 199 71 HOH TIP D . L 4 HOH 9 200 84 HOH TIP D . L 4 HOH 10 201 85 HOH TIP D . L 4 HOH 11 202 89 HOH TIP D . L 4 HOH 12 203 96 HOH TIP D . L 4 HOH 13 204 97 HOH TIP D . L 4 HOH 14 205 99 HOH TIP D . L 4 HOH 15 206 104 HOH TIP D . L 4 HOH 16 207 109 HOH TIP D . L 4 HOH 17 208 110 HOH TIP D . L 4 HOH 18 209 112 HOH TIP D . L 4 HOH 19 210 118 HOH TIP D . L 4 HOH 20 211 122 HOH TIP D . L 4 HOH 21 212 125 HOH TIP D . L 4 HOH 22 213 131 HOH TIP D . L 4 HOH 23 214 134 HOH TIP D . L 4 HOH 24 215 135 HOH TIP D . L 4 HOH 25 216 155 HOH TIP D . L 4 HOH 26 217 156 HOH TIP D . L 4 HOH 27 218 161 HOH TIP D . L 4 HOH 28 219 189 HOH TIP D . L 4 HOH 29 220 190 HOH TIP D . L 4 HOH 30 221 191 HOH TIP D . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id 5IU _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id F _pdbx_struct_mod_residue.auth_comp_id 5IU _pdbx_struct_mod_residue.auth_seq_id 22 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-12-11 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' software 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SCALEPACK 'data scaling' . ? 1 AMoRE phasing . ? 2 CNS refinement 1.0 ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 134 ? ? 24.12 -86.77 2 1 ASN A 154 ? ? -153.18 69.33 3 1 ARG C 135 ? ? 57.06 129.19 4 1 PRO C 155 ? ? -72.40 43.64 5 1 SER C 170 ? ? 80.44 18.06 6 1 PRO D 155 ? ? -68.01 64.90 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 132 ? CG ? C ARG 1 CG 2 1 Y 1 A ARG 132 ? CD ? C ARG 1 CD 3 1 Y 1 A ARG 132 ? NE ? C ARG 1 NE 4 1 Y 1 A ARG 132 ? CZ ? C ARG 1 CZ 5 1 Y 1 A ARG 132 ? NH1 ? C ARG 1 NH1 6 1 Y 1 A ARG 132 ? NH2 ? C ARG 1 NH2 7 1 Y 1 A LYS 138 ? CG ? C LYS 7 CG 8 1 Y 1 A LYS 138 ? CD ? C LYS 7 CD 9 1 Y 1 A LYS 138 ? CE ? C LYS 7 CE 10 1 Y 1 A LYS 138 ? NZ ? C LYS 7 NZ 11 1 Y 1 A ARG 142 ? CG ? C ARG 11 CG 12 1 Y 1 A ARG 142 ? CD ? C ARG 11 CD 13 1 Y 1 A ARG 142 ? NE ? C ARG 11 NE 14 1 Y 1 A ARG 142 ? CZ ? C ARG 11 CZ 15 1 Y 1 A ARG 142 ? NH1 ? C ARG 11 NH1 16 1 Y 1 A ARG 142 ? NH2 ? C ARG 11 NH2 17 1 Y 1 A LYS 167 ? CG ? C LYS 36 CG 18 1 Y 1 A LYS 167 ? CD ? C LYS 36 CD 19 1 Y 1 A LYS 167 ? CE ? C LYS 36 CE 20 1 Y 1 A LYS 167 ? NZ ? C LYS 36 NZ 21 1 Y 1 A LYS 188 ? CG ? C LYS 57 CG 22 1 Y 1 A LYS 188 ? CD ? C LYS 57 CD 23 1 Y 1 A LYS 188 ? CE ? C LYS 57 CE 24 1 Y 1 A LYS 188 ? NZ ? C LYS 57 NZ 25 1 Y 1 A THR 191 ? OG1 ? C THR 60 OG1 26 1 Y 1 A THR 191 ? CG2 ? C THR 60 CG2 27 1 Y 1 B ARG 132 ? CG ? D ARG 1 CG 28 1 Y 1 B ARG 132 ? CD ? D ARG 1 CD 29 1 Y 1 B ARG 132 ? NE ? D ARG 1 NE 30 1 Y 1 B ARG 132 ? CZ ? D ARG 1 CZ 31 1 Y 1 B ARG 132 ? NH1 ? D ARG 1 NH1 32 1 Y 1 B ARG 132 ? NH2 ? D ARG 1 NH2 33 1 Y 1 B LYS 138 ? CG ? D LYS 7 CG 34 1 Y 1 B LYS 138 ? CD ? D LYS 7 CD 35 1 Y 1 B LYS 138 ? CE ? D LYS 7 CE 36 1 Y 1 B LYS 138 ? NZ ? D LYS 7 NZ 37 1 Y 1 B LYS 160 ? CG ? D LYS 29 CG 38 1 Y 1 B LYS 160 ? CD ? D LYS 29 CD 39 1 Y 1 B LYS 160 ? CE ? D LYS 29 CE 40 1 Y 1 B LYS 160 ? NZ ? D LYS 29 NZ 41 1 Y 1 B ILE 190 ? CG1 ? D ILE 59 CG1 42 1 Y 1 B ILE 190 ? CG2 ? D ILE 59 CG2 43 1 Y 1 B ILE 190 ? CD1 ? D ILE 59 CD1 44 1 Y 1 C HIS 134 ? CG ? E HIS 3 CG 45 1 Y 1 C HIS 134 ? ND1 ? E HIS 3 ND1 46 1 Y 1 C HIS 134 ? CD2 ? E HIS 3 CD2 47 1 Y 1 C HIS 134 ? CE1 ? E HIS 3 CE1 48 1 Y 1 C HIS 134 ? NE2 ? E HIS 3 NE2 49 1 Y 1 C ARG 135 ? CG ? E ARG 4 CG 50 1 Y 1 C ARG 135 ? CD ? E ARG 4 CD 51 1 Y 1 C ARG 135 ? NE ? E ARG 4 NE 52 1 Y 1 C ARG 135 ? CZ ? E ARG 4 CZ 53 1 Y 1 C ARG 135 ? NH1 ? E ARG 4 NH1 54 1 Y 1 C ARG 135 ? NH2 ? E ARG 4 NH2 55 1 Y 1 C LYS 138 ? CG ? E LYS 7 CG 56 1 Y 1 C LYS 138 ? CD ? E LYS 7 CD 57 1 Y 1 C LYS 138 ? CE ? E LYS 7 CE 58 1 Y 1 C LYS 138 ? NZ ? E LYS 7 NZ 59 1 Y 1 C GLU 139 ? CG ? E GLU 8 CG 60 1 Y 1 C GLU 139 ? CD ? E GLU 8 CD 61 1 Y 1 C GLU 139 ? OE1 ? E GLU 8 OE1 62 1 Y 1 C GLU 139 ? OE2 ? E GLU 8 OE2 63 1 Y 1 C THR 189 ? OG1 ? E THR 58 OG1 64 1 Y 1 C THR 189 ? CG2 ? E THR 58 CG2 65 1 Y 1 D LYS 138 ? CG ? F LYS 7 CG 66 1 Y 1 D LYS 138 ? CD ? F LYS 7 CD 67 1 Y 1 D LYS 138 ? CE ? F LYS 7 CE 68 1 Y 1 D LYS 138 ? NZ ? F LYS 7 NZ 69 1 Y 1 D LYS 150 ? CG ? F LYS 19 CG 70 1 Y 1 D LYS 150 ? CD ? F LYS 19 CD 71 1 Y 1 D LYS 150 ? CE ? F LYS 19 CE 72 1 Y 1 D LYS 150 ? NZ ? F LYS 19 NZ 73 1 Y 1 D GLU 153 ? CG ? F GLU 22 CG 74 1 Y 1 D GLU 153 ? CD ? F GLU 22 CD 75 1 Y 1 D GLU 153 ? OE1 ? F GLU 22 OE1 76 1 Y 1 D GLU 153 ? OE2 ? F GLU 22 OE2 77 1 Y 1 D LYS 188 ? CG ? F LYS 57 CG 78 1 Y 1 D LYS 188 ? CD ? F LYS 57 CD 79 1 Y 1 D LYS 188 ? CE ? F LYS 57 CE 80 1 Y 1 D LYS 188 ? NZ ? F LYS 57 NZ 81 1 Y 1 D THR 189 ? OG1 ? F THR 58 OG1 82 1 Y 1 D THR 189 ? CG2 ? F THR 58 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B THR 191 ? D THR 60 2 1 Y 1 C ARG 132 ? E ARG 1 3 1 Y 1 C GLY 133 ? E GLY 2 4 1 Y 1 C ILE 190 ? E ILE 59 5 1 Y 1 C THR 191 ? E THR 60 6 1 Y 1 D ILE 190 ? F ILE 59 7 1 Y 1 D THR 191 ? F THR 60 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5IU N1 N N N 1 5IU C2 C N N 2 5IU N3 N N N 3 5IU C4 C N N 4 5IU C5 C N N 5 5IU C6 C N N 6 5IU O2 O N N 7 5IU O4 O N N 8 5IU I5 I N N 9 5IU "C1'" C N R 10 5IU "C2'" C N N 11 5IU "C3'" C N S 12 5IU "C4'" C N R 13 5IU "O3'" O N N 14 5IU "O4'" O N N 15 5IU "C5'" C N N 16 5IU "O5'" O N N 17 5IU P P N N 18 5IU OP1 O N N 19 5IU OP2 O N N 20 5IU OP3 O N N 21 5IU HN3 H N N 22 5IU H6 H N N 23 5IU "H1'" H N N 24 5IU "H2'" H N N 25 5IU "H2''" H N N 26 5IU "H3'" H N N 27 5IU "H4'" H N N 28 5IU "HO3'" H N N 29 5IU "H5'" H N N 30 5IU "H5''" H N N 31 5IU HOP2 H N N 32 5IU HOP3 H N N 33 ALA N N N N 34 ALA CA C N S 35 ALA C C N N 36 ALA O O N N 37 ALA CB C N N 38 ALA OXT O N N 39 ALA H H N N 40 ALA H2 H N N 41 ALA HA H N N 42 ALA HB1 H N N 43 ALA HB2 H N N 44 ALA HB3 H N N 45 ALA HXT H N N 46 ARG N N N N 47 ARG CA C N S 48 ARG C C N N 49 ARG O O N N 50 ARG CB C N N 51 ARG CG C N N 52 ARG CD C N N 53 ARG NE N N N 54 ARG CZ C N N 55 ARG NH1 N N N 56 ARG NH2 N N N 57 ARG OXT O N N 58 ARG H H N N 59 ARG H2 H N N 60 ARG HA H N N 61 ARG HB2 H N N 62 ARG HB3 H N N 63 ARG HG2 H N N 64 ARG HG3 H N N 65 ARG HD2 H N N 66 ARG HD3 H N N 67 ARG HE H N N 68 ARG HH11 H N N 69 ARG HH12 H N N 70 ARG HH21 H N N 71 ARG HH22 H N N 72 ARG HXT H N N 73 ASN N N N N 74 ASN CA C N S 75 ASN C C N N 76 ASN O O N N 77 ASN CB C N N 78 ASN CG C N N 79 ASN OD1 O N N 80 ASN ND2 N N N 81 ASN OXT O N N 82 ASN H H N N 83 ASN H2 H N N 84 ASN HA H N N 85 ASN HB2 H N N 86 ASN HB3 H N N 87 ASN HD21 H N N 88 ASN HD22 H N N 89 ASN HXT H N N 90 ASP N N N N 91 ASP CA C N S 92 ASP C C N N 93 ASP O O N N 94 ASP CB C N N 95 ASP CG C N N 96 ASP OD1 O N N 97 ASP OD2 O N N 98 ASP OXT O N N 99 ASP H H N N 100 ASP H2 H N N 101 ASP HA H N N 102 ASP HB2 H N N 103 ASP HB3 H N N 104 ASP HD2 H N N 105 ASP HXT H N N 106 DA OP3 O N N 107 DA P P N N 108 DA OP1 O N N 109 DA OP2 O N N 110 DA "O5'" O N N 111 DA "C5'" C N N 112 DA "C4'" C N R 113 DA "O4'" O N N 114 DA "C3'" C N S 115 DA "O3'" O N N 116 DA "C2'" C N N 117 DA "C1'" C N R 118 DA N9 N Y N 119 DA C8 C Y N 120 DA N7 N Y N 121 DA C5 C Y N 122 DA C6 C Y N 123 DA N6 N N N 124 DA N1 N Y N 125 DA C2 C Y N 126 DA N3 N Y N 127 DA C4 C Y N 128 DA HOP3 H N N 129 DA HOP2 H N N 130 DA "H5'" H N N 131 DA "H5''" H N N 132 DA "H4'" H N N 133 DA "H3'" H N N 134 DA "HO3'" H N N 135 DA "H2'" H N N 136 DA "H2''" H N N 137 DA "H1'" H N N 138 DA H8 H N N 139 DA H61 H N N 140 DA H62 H N N 141 DA H2 H N N 142 DC OP3 O N N 143 DC P P N N 144 DC OP1 O N N 145 DC OP2 O N N 146 DC "O5'" O N N 147 DC "C5'" C N N 148 DC "C4'" C N R 149 DC "O4'" O N N 150 DC "C3'" C N S 151 DC "O3'" O N N 152 DC "C2'" C N N 153 DC "C1'" C N R 154 DC N1 N N N 155 DC C2 C N N 156 DC O2 O N N 157 DC N3 N N N 158 DC C4 C N N 159 DC N4 N N N 160 DC C5 C N N 161 DC C6 C N N 162 DC HOP3 H N N 163 DC HOP2 H N N 164 DC "H5'" H N N 165 DC "H5''" H N N 166 DC "H4'" H N N 167 DC "H3'" H N N 168 DC "HO3'" H N N 169 DC "H2'" H N N 170 DC "H2''" H N N 171 DC "H1'" H N N 172 DC H41 H N N 173 DC H42 H N N 174 DC H5 H N N 175 DC H6 H N N 176 DG OP3 O N N 177 DG P P N N 178 DG OP1 O N N 179 DG OP2 O N N 180 DG "O5'" O N N 181 DG "C5'" C N N 182 DG "C4'" C N R 183 DG "O4'" O N N 184 DG "C3'" C N S 185 DG "O3'" O N N 186 DG "C2'" C N N 187 DG "C1'" C N R 188 DG N9 N Y N 189 DG C8 C Y N 190 DG N7 N Y N 191 DG C5 C Y N 192 DG C6 C N N 193 DG O6 O N N 194 DG N1 N N N 195 DG C2 C N N 196 DG N2 N N N 197 DG N3 N N N 198 DG C4 C Y N 199 DG HOP3 H N N 200 DG HOP2 H N N 201 DG "H5'" H N N 202 DG "H5''" H N N 203 DG "H4'" H N N 204 DG "H3'" H N N 205 DG "HO3'" H N N 206 DG "H2'" H N N 207 DG "H2''" H N N 208 DG "H1'" H N N 209 DG H8 H N N 210 DG H1 H N N 211 DG H21 H N N 212 DG H22 H N N 213 DT OP3 O N N 214 DT P P N N 215 DT OP1 O N N 216 DT OP2 O N N 217 DT "O5'" O N N 218 DT "C5'" C N N 219 DT "C4'" C N R 220 DT "O4'" O N N 221 DT "C3'" C N S 222 DT "O3'" O N N 223 DT "C2'" C N N 224 DT "C1'" C N R 225 DT N1 N N N 226 DT C2 C N N 227 DT O2 O N N 228 DT N3 N N N 229 DT C4 C N N 230 DT O4 O N N 231 DT C5 C N N 232 DT C7 C N N 233 DT C6 C N N 234 DT HOP3 H N N 235 DT HOP2 H N N 236 DT "H5'" H N N 237 DT "H5''" H N N 238 DT "H4'" H N N 239 DT "H3'" H N N 240 DT "HO3'" H N N 241 DT "H2'" H N N 242 DT "H2''" H N N 243 DT "H1'" H N N 244 DT H3 H N N 245 DT H71 H N N 246 DT H72 H N N 247 DT H73 H N N 248 DT H6 H N N 249 GLN N N N N 250 GLN CA C N S 251 GLN C C N N 252 GLN O O N N 253 GLN CB C N N 254 GLN CG C N N 255 GLN CD C N N 256 GLN OE1 O N N 257 GLN NE2 N N N 258 GLN OXT O N N 259 GLN H H N N 260 GLN H2 H N N 261 GLN HA H N N 262 GLN HB2 H N N 263 GLN HB3 H N N 264 GLN HG2 H N N 265 GLN HG3 H N N 266 GLN HE21 H N N 267 GLN HE22 H N N 268 GLN HXT H N N 269 GLU N N N N 270 GLU CA C N S 271 GLU C C N N 272 GLU O O N N 273 GLU CB C N N 274 GLU CG C N N 275 GLU CD C N N 276 GLU OE1 O N N 277 GLU OE2 O N N 278 GLU OXT O N N 279 GLU H H N N 280 GLU H2 H N N 281 GLU HA H N N 282 GLU HB2 H N N 283 GLU HB3 H N N 284 GLU HG2 H N N 285 GLU HG3 H N N 286 GLU HE2 H N N 287 GLU HXT H N N 288 GLY N N N N 289 GLY CA C N N 290 GLY C C N N 291 GLY O O N N 292 GLY OXT O N N 293 GLY H H N N 294 GLY H2 H N N 295 GLY HA2 H N N 296 GLY HA3 H N N 297 GLY HXT H N N 298 HIS N N N N 299 HIS CA C N S 300 HIS C C N N 301 HIS O O N N 302 HIS CB C N N 303 HIS CG C Y N 304 HIS ND1 N Y N 305 HIS CD2 C Y N 306 HIS CE1 C Y N 307 HIS NE2 N Y N 308 HIS OXT O N N 309 HIS H H N N 310 HIS H2 H N N 311 HIS HA H N N 312 HIS HB2 H N N 313 HIS HB3 H N N 314 HIS HD1 H N N 315 HIS HD2 H N N 316 HIS HE1 H N N 317 HIS HE2 H N N 318 HIS HXT H N N 319 HOH O O N N 320 HOH H1 H N N 321 HOH H2 H N N 322 ILE N N N N 323 ILE CA C N S 324 ILE C C N N 325 ILE O O N N 326 ILE CB C N S 327 ILE CG1 C N N 328 ILE CG2 C N N 329 ILE CD1 C N N 330 ILE OXT O N N 331 ILE H H N N 332 ILE H2 H N N 333 ILE HA H N N 334 ILE HB H N N 335 ILE HG12 H N N 336 ILE HG13 H N N 337 ILE HG21 H N N 338 ILE HG22 H N N 339 ILE HG23 H N N 340 ILE HD11 H N N 341 ILE HD12 H N N 342 ILE HD13 H N N 343 ILE HXT H N N 344 LEU N N N N 345 LEU CA C N S 346 LEU C C N N 347 LEU O O N N 348 LEU CB C N N 349 LEU CG C N N 350 LEU CD1 C N N 351 LEU CD2 C N N 352 LEU OXT O N N 353 LEU H H N N 354 LEU H2 H N N 355 LEU HA H N N 356 LEU HB2 H N N 357 LEU HB3 H N N 358 LEU HG H N N 359 LEU HD11 H N N 360 LEU HD12 H N N 361 LEU HD13 H N N 362 LEU HD21 H N N 363 LEU HD22 H N N 364 LEU HD23 H N N 365 LEU HXT H N N 366 LYS N N N N 367 LYS CA C N S 368 LYS C C N N 369 LYS O O N N 370 LYS CB C N N 371 LYS CG C N N 372 LYS CD C N N 373 LYS CE C N N 374 LYS NZ N N N 375 LYS OXT O N N 376 LYS H H N N 377 LYS H2 H N N 378 LYS HA H N N 379 LYS HB2 H N N 380 LYS HB3 H N N 381 LYS HG2 H N N 382 LYS HG3 H N N 383 LYS HD2 H N N 384 LYS HD3 H N N 385 LYS HE2 H N N 386 LYS HE3 H N N 387 LYS HZ1 H N N 388 LYS HZ2 H N N 389 LYS HZ3 H N N 390 LYS HXT H N N 391 MET N N N N 392 MET CA C N S 393 MET C C N N 394 MET O O N N 395 MET CB C N N 396 MET CG C N N 397 MET SD S N N 398 MET CE C N N 399 MET OXT O N N 400 MET H H N N 401 MET H2 H N N 402 MET HA H N N 403 MET HB2 H N N 404 MET HB3 H N N 405 MET HG2 H N N 406 MET HG3 H N N 407 MET HE1 H N N 408 MET HE2 H N N 409 MET HE3 H N N 410 MET HXT H N N 411 PHE N N N N 412 PHE CA C N S 413 PHE C C N N 414 PHE O O N N 415 PHE CB C N N 416 PHE CG C Y N 417 PHE CD1 C Y N 418 PHE CD2 C Y N 419 PHE CE1 C Y N 420 PHE CE2 C Y N 421 PHE CZ C Y N 422 PHE OXT O N N 423 PHE H H N N 424 PHE H2 H N N 425 PHE HA H N N 426 PHE HB2 H N N 427 PHE HB3 H N N 428 PHE HD1 H N N 429 PHE HD2 H N N 430 PHE HE1 H N N 431 PHE HE2 H N N 432 PHE HZ H N N 433 PHE HXT H N N 434 PRO N N N N 435 PRO CA C N S 436 PRO C C N N 437 PRO O O N N 438 PRO CB C N N 439 PRO CG C N N 440 PRO CD C N N 441 PRO OXT O N N 442 PRO H H N N 443 PRO HA H N N 444 PRO HB2 H N N 445 PRO HB3 H N N 446 PRO HG2 H N N 447 PRO HG3 H N N 448 PRO HD2 H N N 449 PRO HD3 H N N 450 PRO HXT H N N 451 SER N N N N 452 SER CA C N S 453 SER C C N N 454 SER O O N N 455 SER CB C N N 456 SER OG O N N 457 SER OXT O N N 458 SER H H N N 459 SER H2 H N N 460 SER HA H N N 461 SER HB2 H N N 462 SER HB3 H N N 463 SER HG H N N 464 SER HXT H N N 465 THR N N N N 466 THR CA C N S 467 THR C C N N 468 THR O O N N 469 THR CB C N R 470 THR OG1 O N N 471 THR CG2 C N N 472 THR OXT O N N 473 THR H H N N 474 THR H2 H N N 475 THR HA H N N 476 THR HB H N N 477 THR HG1 H N N 478 THR HG21 H N N 479 THR HG22 H N N 480 THR HG23 H N N 481 THR HXT H N N 482 TRP N N N N 483 TRP CA C N S 484 TRP C C N N 485 TRP O O N N 486 TRP CB C N N 487 TRP CG C Y N 488 TRP CD1 C Y N 489 TRP CD2 C Y N 490 TRP NE1 N Y N 491 TRP CE2 C Y N 492 TRP CE3 C Y N 493 TRP CZ2 C Y N 494 TRP CZ3 C Y N 495 TRP CH2 C Y N 496 TRP OXT O N N 497 TRP H H N N 498 TRP H2 H N N 499 TRP HA H N N 500 TRP HB2 H N N 501 TRP HB3 H N N 502 TRP HD1 H N N 503 TRP HE1 H N N 504 TRP HE3 H N N 505 TRP HZ2 H N N 506 TRP HZ3 H N N 507 TRP HH2 H N N 508 TRP HXT H N N 509 TYR N N N N 510 TYR CA C N S 511 TYR C C N N 512 TYR O O N N 513 TYR CB C N N 514 TYR CG C Y N 515 TYR CD1 C Y N 516 TYR CD2 C Y N 517 TYR CE1 C Y N 518 TYR CE2 C Y N 519 TYR CZ C Y N 520 TYR OH O N N 521 TYR OXT O N N 522 TYR H H N N 523 TYR H2 H N N 524 TYR HA H N N 525 TYR HB2 H N N 526 TYR HB3 H N N 527 TYR HD1 H N N 528 TYR HD2 H N N 529 TYR HE1 H N N 530 TYR HE2 H N N 531 TYR HH H N N 532 TYR HXT H N N 533 VAL N N N N 534 VAL CA C N S 535 VAL C C N N 536 VAL O O N N 537 VAL CB C N N 538 VAL CG1 C N N 539 VAL CG2 C N N 540 VAL OXT O N N 541 VAL H H N N 542 VAL H2 H N N 543 VAL HA H N N 544 VAL HB H N N 545 VAL HG11 H N N 546 VAL HG12 H N N 547 VAL HG13 H N N 548 VAL HG21 H N N 549 VAL HG22 H N N 550 VAL HG23 H N N 551 VAL HXT H N N 552 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5IU N1 C2 sing N N 1 5IU N1 C6 sing N N 2 5IU N1 "C1'" sing N N 3 5IU C2 N3 sing N N 4 5IU C2 O2 doub N N 5 5IU N3 C4 sing N N 6 5IU N3 HN3 sing N N 7 5IU C4 C5 sing N N 8 5IU C4 O4 doub N N 9 5IU C5 C6 doub N N 10 5IU C5 I5 sing N N 11 5IU C6 H6 sing N N 12 5IU "C1'" "C2'" sing N N 13 5IU "C1'" "O4'" sing N N 14 5IU "C1'" "H1'" sing N N 15 5IU "C2'" "C3'" sing N N 16 5IU "C2'" "H2'" sing N N 17 5IU "C2'" "H2''" sing N N 18 5IU "C3'" "C4'" sing N N 19 5IU "C3'" "O3'" sing N N 20 5IU "C3'" "H3'" sing N N 21 5IU "C4'" "O4'" sing N N 22 5IU "C4'" "C5'" sing N N 23 5IU "C4'" "H4'" sing N N 24 5IU "O3'" "HO3'" sing N N 25 5IU "C5'" "O5'" sing N N 26 5IU "C5'" "H5'" sing N N 27 5IU "C5'" "H5''" sing N N 28 5IU "O5'" P sing N N 29 5IU P OP1 doub N N 30 5IU P OP2 sing N N 31 5IU P OP3 sing N N 32 5IU OP2 HOP2 sing N N 33 5IU OP3 HOP3 sing N N 34 ALA N CA sing N N 35 ALA N H sing N N 36 ALA N H2 sing N N 37 ALA CA C sing N N 38 ALA CA CB sing N N 39 ALA CA HA sing N N 40 ALA C O doub N N 41 ALA C OXT sing N N 42 ALA CB HB1 sing N N 43 ALA CB HB2 sing N N 44 ALA CB HB3 sing N N 45 ALA OXT HXT sing N N 46 ARG N CA sing N N 47 ARG N H sing N N 48 ARG N H2 sing N N 49 ARG CA C sing N N 50 ARG CA CB sing N N 51 ARG CA HA sing N N 52 ARG C O doub N N 53 ARG C OXT sing N N 54 ARG CB CG sing N N 55 ARG CB HB2 sing N N 56 ARG CB HB3 sing N N 57 ARG CG CD sing N N 58 ARG CG HG2 sing N N 59 ARG CG HG3 sing N N 60 ARG CD NE sing N N 61 ARG CD HD2 sing N N 62 ARG CD HD3 sing N N 63 ARG NE CZ sing N N 64 ARG NE HE sing N N 65 ARG CZ NH1 sing N N 66 ARG CZ NH2 doub N N 67 ARG NH1 HH11 sing N N 68 ARG NH1 HH12 sing N N 69 ARG NH2 HH21 sing N N 70 ARG NH2 HH22 sing N N 71 ARG OXT HXT sing N N 72 ASN N CA sing N N 73 ASN N H sing N N 74 ASN N H2 sing N N 75 ASN CA C sing N N 76 ASN CA CB sing N N 77 ASN CA HA sing N N 78 ASN C O doub N N 79 ASN C OXT sing N N 80 ASN CB CG sing N N 81 ASN CB HB2 sing N N 82 ASN CB HB3 sing N N 83 ASN CG OD1 doub N N 84 ASN CG ND2 sing N N 85 ASN ND2 HD21 sing N N 86 ASN ND2 HD22 sing N N 87 ASN OXT HXT sing N N 88 ASP N CA sing N N 89 ASP N H sing N N 90 ASP N H2 sing N N 91 ASP CA C sing N N 92 ASP CA CB sing N N 93 ASP CA HA sing N N 94 ASP C O doub N N 95 ASP C OXT sing N N 96 ASP CB CG sing N N 97 ASP CB HB2 sing N N 98 ASP CB HB3 sing N N 99 ASP CG OD1 doub N N 100 ASP CG OD2 sing N N 101 ASP OD2 HD2 sing N N 102 ASP OXT HXT sing N N 103 DA OP3 P sing N N 104 DA OP3 HOP3 sing N N 105 DA P OP1 doub N N 106 DA P OP2 sing N N 107 DA P "O5'" sing N N 108 DA OP2 HOP2 sing N N 109 DA "O5'" "C5'" sing N N 110 DA "C5'" "C4'" sing N N 111 DA "C5'" "H5'" sing N N 112 DA "C5'" "H5''" sing N N 113 DA "C4'" "O4'" sing N N 114 DA "C4'" "C3'" sing N N 115 DA "C4'" "H4'" sing N N 116 DA "O4'" "C1'" sing N N 117 DA "C3'" "O3'" sing N N 118 DA "C3'" "C2'" sing N N 119 DA "C3'" "H3'" sing N N 120 DA "O3'" "HO3'" sing N N 121 DA "C2'" "C1'" sing N N 122 DA "C2'" "H2'" sing N N 123 DA "C2'" "H2''" sing N N 124 DA "C1'" N9 sing N N 125 DA "C1'" "H1'" sing N N 126 DA N9 C8 sing Y N 127 DA N9 C4 sing Y N 128 DA C8 N7 doub Y N 129 DA C8 H8 sing N N 130 DA N7 C5 sing Y N 131 DA C5 C6 sing Y N 132 DA C5 C4 doub Y N 133 DA C6 N6 sing N N 134 DA C6 N1 doub Y N 135 DA N6 H61 sing N N 136 DA N6 H62 sing N N 137 DA N1 C2 sing Y N 138 DA C2 N3 doub Y N 139 DA C2 H2 sing N N 140 DA N3 C4 sing Y N 141 DC OP3 P sing N N 142 DC OP3 HOP3 sing N N 143 DC P OP1 doub N N 144 DC P OP2 sing N N 145 DC P "O5'" sing N N 146 DC OP2 HOP2 sing N N 147 DC "O5'" "C5'" sing N N 148 DC "C5'" "C4'" sing N N 149 DC "C5'" "H5'" sing N N 150 DC "C5'" "H5''" sing N N 151 DC "C4'" "O4'" sing N N 152 DC "C4'" "C3'" sing N N 153 DC "C4'" "H4'" sing N N 154 DC "O4'" "C1'" sing N N 155 DC "C3'" "O3'" sing N N 156 DC "C3'" "C2'" sing N N 157 DC "C3'" "H3'" sing N N 158 DC "O3'" "HO3'" sing N N 159 DC "C2'" "C1'" sing N N 160 DC "C2'" "H2'" sing N N 161 DC "C2'" "H2''" sing N N 162 DC "C1'" N1 sing N N 163 DC "C1'" "H1'" sing N N 164 DC N1 C2 sing N N 165 DC N1 C6 sing N N 166 DC C2 O2 doub N N 167 DC C2 N3 sing N N 168 DC N3 C4 doub N N 169 DC C4 N4 sing N N 170 DC C4 C5 sing N N 171 DC N4 H41 sing N N 172 DC N4 H42 sing N N 173 DC C5 C6 doub N N 174 DC C5 H5 sing N N 175 DC C6 H6 sing N N 176 DG OP3 P sing N N 177 DG OP3 HOP3 sing N N 178 DG P OP1 doub N N 179 DG P OP2 sing N N 180 DG P "O5'" sing N N 181 DG OP2 HOP2 sing N N 182 DG "O5'" "C5'" sing N N 183 DG "C5'" "C4'" sing N N 184 DG "C5'" "H5'" sing N N 185 DG "C5'" "H5''" sing N N 186 DG "C4'" "O4'" sing N N 187 DG "C4'" "C3'" sing N N 188 DG "C4'" "H4'" sing N N 189 DG "O4'" "C1'" sing N N 190 DG "C3'" "O3'" sing N N 191 DG "C3'" "C2'" sing N N 192 DG "C3'" "H3'" sing N N 193 DG "O3'" "HO3'" sing N N 194 DG "C2'" "C1'" sing N N 195 DG "C2'" "H2'" sing N N 196 DG "C2'" "H2''" sing N N 197 DG "C1'" N9 sing N N 198 DG "C1'" "H1'" sing N N 199 DG N9 C8 sing Y N 200 DG N9 C4 sing Y N 201 DG C8 N7 doub Y N 202 DG C8 H8 sing N N 203 DG N7 C5 sing Y N 204 DG C5 C6 sing N N 205 DG C5 C4 doub Y N 206 DG C6 O6 doub N N 207 DG C6 N1 sing N N 208 DG N1 C2 sing N N 209 DG N1 H1 sing N N 210 DG C2 N2 sing N N 211 DG C2 N3 doub N N 212 DG N2 H21 sing N N 213 DG N2 H22 sing N N 214 DG N3 C4 sing N N 215 DT OP3 P sing N N 216 DT OP3 HOP3 sing N N 217 DT P OP1 doub N N 218 DT P OP2 sing N N 219 DT P "O5'" sing N N 220 DT OP2 HOP2 sing N N 221 DT "O5'" "C5'" sing N N 222 DT "C5'" "C4'" sing N N 223 DT "C5'" "H5'" sing N N 224 DT "C5'" "H5''" sing N N 225 DT "C4'" "O4'" sing N N 226 DT "C4'" "C3'" sing N N 227 DT "C4'" "H4'" sing N N 228 DT "O4'" "C1'" sing N N 229 DT "C3'" "O3'" sing N N 230 DT "C3'" "C2'" sing N N 231 DT "C3'" "H3'" sing N N 232 DT "O3'" "HO3'" sing N N 233 DT "C2'" "C1'" sing N N 234 DT "C2'" "H2'" sing N N 235 DT "C2'" "H2''" sing N N 236 DT "C1'" N1 sing N N 237 DT "C1'" "H1'" sing N N 238 DT N1 C2 sing N N 239 DT N1 C6 sing N N 240 DT C2 O2 doub N N 241 DT C2 N3 sing N N 242 DT N3 C4 sing N N 243 DT N3 H3 sing N N 244 DT C4 O4 doub N N 245 DT C4 C5 sing N N 246 DT C5 C7 sing N N 247 DT C5 C6 doub N N 248 DT C7 H71 sing N N 249 DT C7 H72 sing N N 250 DT C7 H73 sing N N 251 DT C6 H6 sing N N 252 GLN N CA sing N N 253 GLN N H sing N N 254 GLN N H2 sing N N 255 GLN CA C sing N N 256 GLN CA CB sing N N 257 GLN CA HA sing N N 258 GLN C O doub N N 259 GLN C OXT sing N N 260 GLN CB CG sing N N 261 GLN CB HB2 sing N N 262 GLN CB HB3 sing N N 263 GLN CG CD sing N N 264 GLN CG HG2 sing N N 265 GLN CG HG3 sing N N 266 GLN CD OE1 doub N N 267 GLN CD NE2 sing N N 268 GLN NE2 HE21 sing N N 269 GLN NE2 HE22 sing N N 270 GLN OXT HXT sing N N 271 GLU N CA sing N N 272 GLU N H sing N N 273 GLU N H2 sing N N 274 GLU CA C sing N N 275 GLU CA CB sing N N 276 GLU CA HA sing N N 277 GLU C O doub N N 278 GLU C OXT sing N N 279 GLU CB CG sing N N 280 GLU CB HB2 sing N N 281 GLU CB HB3 sing N N 282 GLU CG CD sing N N 283 GLU CG HG2 sing N N 284 GLU CG HG3 sing N N 285 GLU CD OE1 doub N N 286 GLU CD OE2 sing N N 287 GLU OE2 HE2 sing N N 288 GLU OXT HXT sing N N 289 GLY N CA sing N N 290 GLY N H sing N N 291 GLY N H2 sing N N 292 GLY CA C sing N N 293 GLY CA HA2 sing N N 294 GLY CA HA3 sing N N 295 GLY C O doub N N 296 GLY C OXT sing N N 297 GLY OXT HXT sing N N 298 HIS N CA sing N N 299 HIS N H sing N N 300 HIS N H2 sing N N 301 HIS CA C sing N N 302 HIS CA CB sing N N 303 HIS CA HA sing N N 304 HIS C O doub N N 305 HIS C OXT sing N N 306 HIS CB CG sing N N 307 HIS CB HB2 sing N N 308 HIS CB HB3 sing N N 309 HIS CG ND1 sing Y N 310 HIS CG CD2 doub Y N 311 HIS ND1 CE1 doub Y N 312 HIS ND1 HD1 sing N N 313 HIS CD2 NE2 sing Y N 314 HIS CD2 HD2 sing N N 315 HIS CE1 NE2 sing Y N 316 HIS CE1 HE1 sing N N 317 HIS NE2 HE2 sing N N 318 HIS OXT HXT sing N N 319 HOH O H1 sing N N 320 HOH O H2 sing N N 321 ILE N CA sing N N 322 ILE N H sing N N 323 ILE N H2 sing N N 324 ILE CA C sing N N 325 ILE CA CB sing N N 326 ILE CA HA sing N N 327 ILE C O doub N N 328 ILE C OXT sing N N 329 ILE CB CG1 sing N N 330 ILE CB CG2 sing N N 331 ILE CB HB sing N N 332 ILE CG1 CD1 sing N N 333 ILE CG1 HG12 sing N N 334 ILE CG1 HG13 sing N N 335 ILE CG2 HG21 sing N N 336 ILE CG2 HG22 sing N N 337 ILE CG2 HG23 sing N N 338 ILE CD1 HD11 sing N N 339 ILE CD1 HD12 sing N N 340 ILE CD1 HD13 sing N N 341 ILE OXT HXT sing N N 342 LEU N CA sing N N 343 LEU N H sing N N 344 LEU N H2 sing N N 345 LEU CA C sing N N 346 LEU CA CB sing N N 347 LEU CA HA sing N N 348 LEU C O doub N N 349 LEU C OXT sing N N 350 LEU CB CG sing N N 351 LEU CB HB2 sing N N 352 LEU CB HB3 sing N N 353 LEU CG CD1 sing N N 354 LEU CG CD2 sing N N 355 LEU CG HG sing N N 356 LEU CD1 HD11 sing N N 357 LEU CD1 HD12 sing N N 358 LEU CD1 HD13 sing N N 359 LEU CD2 HD21 sing N N 360 LEU CD2 HD22 sing N N 361 LEU CD2 HD23 sing N N 362 LEU OXT HXT sing N N 363 LYS N CA sing N N 364 LYS N H sing N N 365 LYS N H2 sing N N 366 LYS CA C sing N N 367 LYS CA CB sing N N 368 LYS CA HA sing N N 369 LYS C O doub N N 370 LYS C OXT sing N N 371 LYS CB CG sing N N 372 LYS CB HB2 sing N N 373 LYS CB HB3 sing N N 374 LYS CG CD sing N N 375 LYS CG HG2 sing N N 376 LYS CG HG3 sing N N 377 LYS CD CE sing N N 378 LYS CD HD2 sing N N 379 LYS CD HD3 sing N N 380 LYS CE NZ sing N N 381 LYS CE HE2 sing N N 382 LYS CE HE3 sing N N 383 LYS NZ HZ1 sing N N 384 LYS NZ HZ2 sing N N 385 LYS NZ HZ3 sing N N 386 LYS OXT HXT sing N N 387 MET N CA sing N N 388 MET N H sing N N 389 MET N H2 sing N N 390 MET CA C sing N N 391 MET CA CB sing N N 392 MET CA HA sing N N 393 MET C O doub N N 394 MET C OXT sing N N 395 MET CB CG sing N N 396 MET CB HB2 sing N N 397 MET CB HB3 sing N N 398 MET CG SD sing N N 399 MET CG HG2 sing N N 400 MET CG HG3 sing N N 401 MET SD CE sing N N 402 MET CE HE1 sing N N 403 MET CE HE2 sing N N 404 MET CE HE3 sing N N 405 MET OXT HXT sing N N 406 PHE N CA sing N N 407 PHE N H sing N N 408 PHE N H2 sing N N 409 PHE CA C sing N N 410 PHE CA CB sing N N 411 PHE CA HA sing N N 412 PHE C O doub N N 413 PHE C OXT sing N N 414 PHE CB CG sing N N 415 PHE CB HB2 sing N N 416 PHE CB HB3 sing N N 417 PHE CG CD1 doub Y N 418 PHE CG CD2 sing Y N 419 PHE CD1 CE1 sing Y N 420 PHE CD1 HD1 sing N N 421 PHE CD2 CE2 doub Y N 422 PHE CD2 HD2 sing N N 423 PHE CE1 CZ doub Y N 424 PHE CE1 HE1 sing N N 425 PHE CE2 CZ sing Y N 426 PHE CE2 HE2 sing N N 427 PHE CZ HZ sing N N 428 PHE OXT HXT sing N N 429 PRO N CA sing N N 430 PRO N CD sing N N 431 PRO N H sing N N 432 PRO CA C sing N N 433 PRO CA CB sing N N 434 PRO CA HA sing N N 435 PRO C O doub N N 436 PRO C OXT sing N N 437 PRO CB CG sing N N 438 PRO CB HB2 sing N N 439 PRO CB HB3 sing N N 440 PRO CG CD sing N N 441 PRO CG HG2 sing N N 442 PRO CG HG3 sing N N 443 PRO CD HD2 sing N N 444 PRO CD HD3 sing N N 445 PRO OXT HXT sing N N 446 SER N CA sing N N 447 SER N H sing N N 448 SER N H2 sing N N 449 SER CA C sing N N 450 SER CA CB sing N N 451 SER CA HA sing N N 452 SER C O doub N N 453 SER C OXT sing N N 454 SER CB OG sing N N 455 SER CB HB2 sing N N 456 SER CB HB3 sing N N 457 SER OG HG sing N N 458 SER OXT HXT sing N N 459 THR N CA sing N N 460 THR N H sing N N 461 THR N H2 sing N N 462 THR CA C sing N N 463 THR CA CB sing N N 464 THR CA HA sing N N 465 THR C O doub N N 466 THR C OXT sing N N 467 THR CB OG1 sing N N 468 THR CB CG2 sing N N 469 THR CB HB sing N N 470 THR OG1 HG1 sing N N 471 THR CG2 HG21 sing N N 472 THR CG2 HG22 sing N N 473 THR CG2 HG23 sing N N 474 THR OXT HXT sing N N 475 TRP N CA sing N N 476 TRP N H sing N N 477 TRP N H2 sing N N 478 TRP CA C sing N N 479 TRP CA CB sing N N 480 TRP CA HA sing N N 481 TRP C O doub N N 482 TRP C OXT sing N N 483 TRP CB CG sing N N 484 TRP CB HB2 sing N N 485 TRP CB HB3 sing N N 486 TRP CG CD1 doub Y N 487 TRP CG CD2 sing Y N 488 TRP CD1 NE1 sing Y N 489 TRP CD1 HD1 sing N N 490 TRP CD2 CE2 doub Y N 491 TRP CD2 CE3 sing Y N 492 TRP NE1 CE2 sing Y N 493 TRP NE1 HE1 sing N N 494 TRP CE2 CZ2 sing Y N 495 TRP CE3 CZ3 doub Y N 496 TRP CE3 HE3 sing N N 497 TRP CZ2 CH2 doub Y N 498 TRP CZ2 HZ2 sing N N 499 TRP CZ3 CH2 sing Y N 500 TRP CZ3 HZ3 sing N N 501 TRP CH2 HH2 sing N N 502 TRP OXT HXT sing N N 503 TYR N CA sing N N 504 TYR N H sing N N 505 TYR N H2 sing N N 506 TYR CA C sing N N 507 TYR CA CB sing N N 508 TYR CA HA sing N N 509 TYR C O doub N N 510 TYR C OXT sing N N 511 TYR CB CG sing N N 512 TYR CB HB2 sing N N 513 TYR CB HB3 sing N N 514 TYR CG CD1 doub Y N 515 TYR CG CD2 sing Y N 516 TYR CD1 CE1 sing Y N 517 TYR CD1 HD1 sing N N 518 TYR CD2 CE2 doub Y N 519 TYR CD2 HD2 sing N N 520 TYR CE1 CZ doub Y N 521 TYR CE1 HE1 sing N N 522 TYR CE2 CZ sing Y N 523 TYR CE2 HE2 sing N N 524 TYR CZ OH sing N N 525 TYR OH HH sing N N 526 TYR OXT HXT sing N N 527 VAL N CA sing N N 528 VAL N H sing N N 529 VAL N H2 sing N N 530 VAL CA C sing N N 531 VAL CA CB sing N N 532 VAL CA HA sing N N 533 VAL C O doub N N 534 VAL C OXT sing N N 535 VAL CB CG1 sing N N 536 VAL CB CG2 sing N N 537 VAL CB HB sing N N 538 VAL CG1 HG11 sing N N 539 VAL CG1 HG12 sing N N 540 VAL CG1 HG13 sing N N 541 VAL CG2 HG21 sing N N 542 VAL CG2 HG22 sing N N 543 VAL CG2 HG23 sing N N 544 VAL OXT HXT sing N N 545 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1K61 'double helix' 1K61 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 21 1_555 0.213 -0.013 -0.218 -6.781 -0.665 1.155 1 E_DC2:DG42_F E 2 ? F 42 ? 19 1 1 A DA 3 1_555 B DT 20 1_555 -0.059 -0.136 -0.123 9.928 -6.085 0.952 2 E_DA3:DT41_F E 3 ? F 41 ? 20 1 1 A DT 4 1_555 B DA 19 1_555 0.161 -0.117 -0.006 21.386 -4.120 2.905 3 E_DT4:DA40_F E 4 ? F 40 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 -0.441 -0.003 -0.383 -2.495 -8.552 2.249 4 E_DG5:DC39_F E 5 ? F 39 ? 19 1 1 A DT 6 1_555 B DA 17 1_555 0.226 -0.054 -0.179 1.332 -11.357 9.081 5 E_DT6:DA38_F E 6 ? F 38 ? 20 1 1 A DA 7 1_555 B DT 16 1_555 0.384 -3.613 -0.141 2.518 10.527 67.293 6 E_DA7:DT37_F E 7 ? F 37 ? 23 3 1 A DA 8 1_555 B DT 15 1_555 -0.061 -0.118 -0.050 -1.666 -16.694 15.903 7 E_DA8:DT36_F E 8 ? F 36 ? 20 1 1 A DT 9 1_555 B DA 14 1_555 -0.079 -0.070 0.019 -4.621 -12.185 -0.512 8 E_DT9:DA35_F E 9 ? F 35 ? 20 1 1 A DT 10 1_555 B DA 13 1_555 0.262 -0.093 -0.232 -0.715 -11.768 2.640 9 E_DT10:DA34_F E 10 ? F 34 ? 20 1 1 A DC 11 1_555 B DG 12 1_555 0.443 0.010 0.146 -7.930 -15.919 1.753 10 E_DC11:DG33_F E 11 ? F 33 ? 19 1 1 A DA 12 1_555 B DT 11 1_555 0.006 -0.008 -0.080 -6.690 -0.829 2.130 11 E_DA12:DT32_F E 12 ? F 32 ? 20 1 1 A DT 13 1_555 B DA 10 1_555 0.024 -0.025 0.030 9.848 -9.484 1.224 12 E_DT13:DA31_F E 13 ? F 31 ? 20 1 1 A DT 14 1_555 B DA 9 1_555 -0.127 -0.064 0.033 0.393 -21.396 5.242 13 E_DT14:DA30_F E 14 ? F 30 ? 20 1 1 A DT 15 1_555 B DA 8 1_555 -0.155 -0.077 -0.233 3.312 -13.890 2.567 14 E_DT15:DA29_F E 15 ? F 29 ? 20 1 1 A DA 16 1_555 B DT 7 1_555 -0.417 -0.090 -0.103 -11.635 -5.599 9.631 15 E_DA16:DT28_F E 16 ? F 28 ? 20 1 1 A DC 17 1_555 B DG 6 1_555 0.185 -0.081 -0.003 -4.481 -8.847 1.684 16 E_DC17:DG27_F E 17 ? F 27 ? 19 1 1 A DA 18 1_555 B DT 5 1_555 0.237 -0.077 0.265 -8.391 -9.729 4.391 17 E_DA18:DT26_F E 18 ? F 26 ? 20 1 1 A DC 19 1_555 B DG 4 1_555 0.113 -0.004 -0.139 1.723 -7.736 0.412 18 E_DC19:DG25_F E 19 ? F 25 ? 19 1 1 A DG 20 1_555 B DC 3 1_555 -0.276 -0.182 0.024 4.537 -5.449 -3.919 19 E_DG20:DC24_F E 20 ? F 24 ? 19 1 1 A DC 21 1_555 B DG 2 1_555 0.592 -0.361 -0.634 10.556 -6.843 0.835 20 E_DC21:DG23_F E 21 ? F 23 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 21 1_555 A DA 3 1_555 B DT 20 1_555 -0.181 0.853 3.133 0.119 9.319 33.805 0.024 0.318 3.246 15.659 -0.199 35.030 1 EE_DC2DA3:DT41DG42_FF E 2 ? F 42 ? E 3 ? F 41 ? 1 A DA 3 1_555 B DT 20 1_555 A DT 4 1_555 B DA 19 1_555 0.747 -0.242 3.128 -2.482 4.327 26.131 -1.595 -2.237 2.968 9.461 5.426 26.595 2 EE_DA3DT4:DA40DT41_FF E 3 ? F 41 ? E 4 ? F 40 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 -0.092 -0.068 3.714 4.875 6.840 41.939 -0.870 0.680 3.627 9.442 -6.730 42.735 3 EE_DT4DG5:DC39DA40_FF E 4 ? F 40 ? E 5 ? F 39 ? 1 A DG 5 1_555 B DC 18 1_555 A DT 6 1_555 B DA 17 1_555 0.821 -0.670 3.177 -0.434 3.522 29.786 -1.990 -1.673 3.067 6.821 0.841 29.992 4 EE_DG5DT6:DA38DC39_FF E 5 ? F 39 ? E 6 ? F 38 ? 1 A DT 6 1_555 B DA 17 1_555 A DA 7 1_555 B DT 16 1_555 -0.276 3.560 -1.387 176.268 -4.039 -45.463 -1.793 -0.668 -0.207 2.046 89.264 -176.601 5 EE_DT6DA7:DT37DA38_FF E 6 ? F 38 ? E 7 ? F 37 ? 1 A DA 7 1_555 B DT 16 1_555 A DA 8 1_555 B DT 15 1_555 -0.715 -3.340 -1.149 137.307 -101.422 171.628 -1.694 0.325 -1.043 -50.718 -68.664 179.322 6 EE_DA7DA8:DT36DT37_FF E 7 ? F 37 ? E 8 ? F 36 ? 1 A DA 8 1_555 B DT 15 1_555 A DT 9 1_555 B DA 14 1_555 -1.088 -0.712 3.289 -2.988 3.429 31.979 -1.894 1.422 3.282 6.185 5.390 32.293 7 EE_DA8DT9:DA35DT36_FF E 8 ? F 36 ? E 9 ? F 35 ? 1 A DT 9 1_555 B DA 14 1_555 A DT 10 1_555 B DA 13 1_555 -0.080 -0.277 3.141 3.657 4.885 32.948 -1.248 0.713 3.044 8.521 -6.380 33.493 8 EE_DT9DT10:DA34DA35_FF E 9 ? F 35 ? E 10 ? F 34 ? 1 A DT 10 1_555 B DA 13 1_555 A DC 11 1_555 B DG 12 1_555 -0.330 0.530 3.467 -3.302 -4.984 40.867 1.317 0.094 3.398 -7.093 4.699 41.283 9 EE_DT10DC11:DG33DA34_FF E 10 ? F 34 ? E 11 ? F 33 ? 1 A DC 11 1_555 B DG 12 1_555 A DA 12 1_555 B DT 11 1_555 0.437 1.357 3.279 1.664 -0.692 42.245 1.952 -0.435 3.271 -0.959 -2.308 42.282 10 EE_DC11DA12:DT32DG33_FF E 11 ? F 33 ? E 12 ? F 32 ? 1 A DA 12 1_555 B DT 11 1_555 A DT 13 1_555 B DA 10 1_555 -0.054 -0.307 2.997 -0.873 1.470 28.016 -0.950 -0.076 2.978 3.033 1.802 28.067 11 EE_DA12DT13:DA31DT32_FF E 12 ? F 32 ? E 13 ? F 31 ? 1 A DT 13 1_555 B DA 10 1_555 A DT 14 1_555 B DA 9 1_555 -0.061 -0.508 3.399 0.056 2.025 34.484 -1.179 0.112 3.365 3.413 -0.094 34.542 12 EE_DT13DT14:DA30DA31_FF E 13 ? F 31 ? E 14 ? F 30 ? 1 A DT 14 1_555 B DA 9 1_555 A DT 15 1_555 B DA 8 1_555 0.175 -0.180 3.081 4.880 2.421 34.739 -0.639 0.398 3.058 4.024 -8.112 35.151 13 EE_DT14DT15:DA29DA30_FF E 14 ? F 30 ? E 15 ? F 29 ? 1 A DT 15 1_555 B DA 8 1_555 A DA 16 1_555 B DT 7 1_555 0.700 -0.080 3.671 2.017 4.685 38.703 -0.756 -0.774 3.667 7.032 -3.027 39.025 14 EE_DT15DA16:DT28DA29_FF E 15 ? F 29 ? E 16 ? F 28 ? 1 A DA 16 1_555 B DT 7 1_555 A DC 17 1_555 B DG 6 1_555 -0.627 -0.615 3.146 -1.794 1.402 30.399 -1.439 0.847 3.146 2.669 3.416 30.482 15 EE_DA16DC17:DG27DT28_FF E 16 ? F 28 ? E 17 ? F 27 ? 1 A DC 17 1_555 B DG 6 1_555 A DA 18 1_555 B DT 5 1_555 0.006 -0.280 3.322 -0.379 7.080 36.902 -1.367 -0.060 3.216 11.059 0.591 37.553 16 EE_DC17DA18:DT26DG27_FF E 17 ? F 27 ? E 18 ? F 26 ? 1 A DA 18 1_555 B DT 5 1_555 A DC 19 1_555 B DG 4 1_555 -0.412 0.009 3.062 3.646 1.779 29.435 -0.329 1.515 2.986 3.480 -7.132 29.707 17 EE_DA18DC19:DG25DT26_FF E 18 ? F 26 ? E 19 ? F 25 ? 1 A DC 19 1_555 B DG 4 1_555 A DG 20 1_555 B DC 3 1_555 0.318 0.289 3.370 -1.152 6.647 35.120 -0.524 -0.690 3.355 10.891 1.888 35.742 18 EE_DC19DG20:DC24DG25_FF E 19 ? F 25 ? E 20 ? F 24 ? 1 A DG 20 1_555 B DC 3 1_555 A DC 21 1_555 B DG 2 1_555 0.473 -0.627 3.158 5.090 7.956 30.483 -2.524 0.024 2.944 14.694 -9.401 31.880 19 EE_DG20DC21:DG23DC24_FF E 20 ? F 24 ? E 21 ? F 23 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1APL _pdbx_initial_refinement_model.details 'PDB ENTRY 1APL' #