HEADER TRANSFERASE 17-OCT-01 1K6Y TITLE CRYSTAL STRUCTURE OF A TWO-DOMAIN FRAGMENT OF HIV-1 INTEGRASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL AND CORE DOMAINS (RESIDUES 716-927); COMPND 5 EC: 2.7.7.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1, INTEGRASE, DOMAIN ORGANIZATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,H.LING,W.YANG,R.CRAIGIE REVDAT 6 07-FEB-24 1K6Y 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1K6Y 1 VERSN REVDAT 4 30-MAR-11 1K6Y 1 COMPND REMARK SEQRES REVDAT 3 24-FEB-09 1K6Y 1 VERSN REVDAT 2 01-APR-03 1K6Y 1 JRNL REVDAT 1 21-DEC-01 1K6Y 0 JRNL AUTH J.Y.WANG,H.LING,W.YANG,R.CRAIGIE JRNL TITL STRUCTURE OF A TWO-DOMAIN FRAGMENT OF HIV-1 INTEGRASE: JRNL TITL 2 IMPLICATIONS FOR DOMAIN ORGANIZATION IN THE INTACT PROTEIN. JRNL REF EMBO J. V. 20 7333 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11743009 JRNL DOI 10.1093/EMBOJ/20.24.7333 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 51553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.037 REMARK 3 FREE R VALUE TEST SET COUNT : 2597 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2827 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7 M NAH2PO4/1.0 K2HPO4, 0.1M NA REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.28000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.35500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 210.42000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.35500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.14000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.35500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.35500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 210.42000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.35500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.35500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.14000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 140.28000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 102.71000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 205.42000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 140.28000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 GLU A 48 REMARK 465 ALA A 49 REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 PRO A 142 REMARK 465 TYR A 143 REMARK 465 ASN A 144 REMARK 465 PRO A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 GLN A 148 REMARK 465 LYS A 211 REMARK 465 GLU A 212 REMARK 465 GLY B 47 REMARK 465 GLU B 48 REMARK 465 ALA B 49 REMARK 465 MET B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLN B 53 REMARK 465 VAL B 54 REMARK 465 ASP B 55 REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 PRO B 142 REMARK 465 TYR B 143 REMARK 465 ASN B 144 REMARK 465 PRO B 145 REMARK 465 GLN B 146 REMARK 465 SER B 147 REMARK 465 GLN B 148 REMARK 465 GLY C 47 REMARK 465 GLU C 48 REMARK 465 ALA C 49 REMARK 465 MET C 50 REMARK 465 HIS C 51 REMARK 465 GLY C 52 REMARK 465 GLN C 53 REMARK 465 VAL C 54 REMARK 465 ASP C 55 REMARK 465 GLY C 140 REMARK 465 ILE C 141 REMARK 465 PRO C 142 REMARK 465 TYR C 143 REMARK 465 ASN C 144 REMARK 465 PRO C 145 REMARK 465 GLN C 146 REMARK 465 SER C 147 REMARK 465 GLN C 148 REMARK 465 THR C 210 REMARK 465 LYS C 211 REMARK 465 GLU C 212 REMARK 465 GLY D 47 REMARK 465 GLU D 48 REMARK 465 ALA D 49 REMARK 465 MET D 50 REMARK 465 HIS D 51 REMARK 465 GLY D 52 REMARK 465 GLN D 53 REMARK 465 VAL D 54 REMARK 465 ASP D 55 REMARK 465 GLY D 140 REMARK 465 ILE D 141 REMARK 465 PRO D 142 REMARK 465 TYR D 143 REMARK 465 ASN D 144 REMARK 465 PRO D 145 REMARK 465 GLN D 146 REMARK 465 SER D 147 REMARK 465 GLN D 148 REMARK 465 GLY D 149 REMARK 465 VAL D 150 REMARK 465 ILE D 151 REMARK 465 GLU D 152 REMARK 465 GLU D 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 58.78 -105.02 REMARK 500 ASP A 3 0.94 80.84 REMARK 500 ASN A 117 33.82 -97.56 REMARK 500 CYS B 43 -169.49 -127.64 REMARK 500 GLN B 44 136.10 -174.64 REMARK 500 ASP C 116 -151.74 -80.39 REMARK 500 GLU C 138 94.25 -161.05 REMARK 500 GLU D 170 -76.93 -100.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HIS A 16 ND1 120.6 REMARK 620 3 CYS A 40 SG 107.0 96.2 REMARK 620 4 CYS A 43 SG 105.2 105.4 123.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 451 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 37 O REMARK 620 2 ALA A 38 O 61.2 REMARK 620 3 CYS A 40 O 66.3 66.2 REMARK 620 4 CYS A 43 O 99.5 145.2 79.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 12 NE2 REMARK 620 2 HIS B 16 ND1 116.7 REMARK 620 3 CYS B 40 SG 101.6 96.3 REMARK 620 4 CYS B 43 SG 109.5 117.6 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 452 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 37 O REMARK 620 2 ALA B 38 O 67.9 REMARK 620 3 CYS B 40 O 64.5 77.9 REMARK 620 4 CYS B 43 O 94.7 155.0 78.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 12 NE2 REMARK 620 2 HIS C 16 ND1 114.6 REMARK 620 3 CYS C 40 SG 107.8 100.5 REMARK 620 4 CYS C 43 SG 106.6 104.0 123.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 453 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL C 37 O REMARK 620 2 ALA C 38 O 68.9 REMARK 620 3 CYS C 40 O 68.8 90.5 REMARK 620 4 CYS C 43 O 91.3 157.6 72.0 REMARK 620 5 HOH C 517 O 92.3 93.6 157.7 97.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 12 NE2 REMARK 620 2 HIS D 16 ND1 109.1 REMARK 620 3 CYS D 40 SG 105.0 97.4 REMARK 620 4 CYS D 43 SG 110.0 114.9 119.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 454 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL D 37 O REMARK 620 2 ALA D 38 O 66.9 REMARK 620 3 CYS D 40 O 69.9 85.1 REMARK 620 4 CYS D 43 O 104.3 165.7 81.1 REMARK 620 5 HOH D 544 O 93.3 99.9 159.2 91.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 504 DBREF 1K6Y A 1 212 UNP Q72498 Q72498_9HIV1 716 927 DBREF 1K6Y B 1 212 UNP Q72498 Q72498_9HIV1 716 927 DBREF 1K6Y C 1 212 UNP Q72498 Q72498_9HIV1 716 927 DBREF 1K6Y D 1 212 UNP Q72498 Q72498_9HIV1 716 927 SEQADV 1K6Y ASP A 131 UNP Q72498 TRP 846 ENGINEERED MUTATION SEQADV 1K6Y ASP A 139 UNP Q72498 PHE 854 ENGINEERED MUTATION SEQADV 1K6Y LYS A 185 UNP Q72498 PHE 900 ENGINEERED MUTATION SEQADV 1K6Y ASP B 131 UNP Q72498 TRP 846 ENGINEERED MUTATION SEQADV 1K6Y ASP B 139 UNP Q72498 PHE 854 ENGINEERED MUTATION SEQADV 1K6Y LYS B 185 UNP Q72498 PHE 900 ENGINEERED MUTATION SEQADV 1K6Y ASP C 131 UNP Q72498 TRP 846 ENGINEERED MUTATION SEQADV 1K6Y ASP C 139 UNP Q72498 PHE 854 ENGINEERED MUTATION SEQADV 1K6Y LYS C 185 UNP Q72498 PHE 900 ENGINEERED MUTATION SEQADV 1K6Y ASP D 131 UNP Q72498 TRP 846 ENGINEERED MUTATION SEQADV 1K6Y ASP D 139 UNP Q72498 PHE 854 ENGINEERED MUTATION SEQADV 1K6Y LYS D 185 UNP Q72498 PHE 900 ENGINEERED MUTATION SEQRES 1 A 212 PHE LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 A 212 LYS TYR HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 A 212 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 A 212 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 A 212 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 A 212 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 A 212 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 A 212 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 A 212 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 A 212 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 A 212 ASP TRP ALA GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR SEQRES 12 A 212 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 A 212 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 A 212 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 A 212 HIS ASN LYS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 A 212 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 A 212 GLN THR LYS GLU SEQRES 1 B 212 PHE LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 B 212 LYS TYR HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 B 212 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 B 212 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 B 212 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 B 212 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 B 212 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 B 212 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 B 212 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 B 212 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 B 212 ASP TRP ALA GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR SEQRES 12 B 212 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 B 212 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 B 212 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 B 212 HIS ASN LYS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 B 212 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 B 212 GLN THR LYS GLU SEQRES 1 C 212 PHE LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 C 212 LYS TYR HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 C 212 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 C 212 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 C 212 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 C 212 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 C 212 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 C 212 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 C 212 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 C 212 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 C 212 ASP TRP ALA GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR SEQRES 12 C 212 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 C 212 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 C 212 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 C 212 HIS ASN LYS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 C 212 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 C 212 GLN THR LYS GLU SEQRES 1 D 212 PHE LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 D 212 LYS TYR HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 D 212 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 D 212 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 D 212 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 D 212 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 D 212 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 D 212 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 D 212 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 D 212 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 D 212 ASP TRP ALA GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR SEQRES 12 D 212 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 D 212 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 D 212 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 D 212 HIS ASN LYS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 D 212 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 D 212 GLN THR LYS GLU HET ZN A 401 1 HET K A 451 1 HET PO4 A 501 5 HET ZN B 402 1 HET K B 452 1 HET PO4 B 502 5 HET ZN C 403 1 HET K C 453 1 HET PO4 C 503 5 HET ZN D 404 1 HET K D 454 1 HET PO4 D 504 5 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 5 ZN 4(ZN 2+) FORMUL 6 K 4(K 1+) FORMUL 7 PO4 4(O4 P 3-) FORMUL 17 HOH *176(H2 O) HELIX 1 1 ASP A 3 HIS A 16 1 14 HELIX 2 2 ASN A 18 ASN A 27 1 10 HELIX 3 3 PRO A 29 CYS A 40 1 12 HELIX 4 4 THR A 93 TRP A 108 1 16 HELIX 5 5 SER A 123 GLY A 134 1 12 HELIX 6 6 GLY A 149 GLN A 164 1 16 HELIX 7 7 VAL A 165 ALA A 169 5 5 HELIX 8 8 HIS A 171 LYS A 186 1 16 HELIX 9 9 SER A 195 THR A 210 1 16 HELIX 10 10 ASP B 3 HIS B 16 1 14 HELIX 11 11 ASN B 18 ASN B 27 1 10 HELIX 12 12 PRO B 29 CYS B 40 1 12 HELIX 13 13 THR B 93 TRP B 108 1 16 HELIX 14 14 GLY B 118 SER B 123 1 6 HELIX 15 15 SER B 123 ALA B 133 1 11 HELIX 16 16 GLY B 149 ARG B 166 1 18 HELIX 17 17 ASP B 167 ALA B 169 5 3 HELIX 18 18 HIS B 171 LYS B 186 1 16 HELIX 19 19 ALA B 196 THR B 210 1 15 HELIX 20 20 ASP C 3 HIS C 16 1 14 HELIX 21 21 ASN C 18 PHE C 26 1 9 HELIX 22 22 PRO C 29 CYS C 40 1 12 HELIX 23 23 THR C 93 GLY C 106 1 14 HELIX 24 24 GLY C 118 SER C 123 1 6 HELIX 25 25 SER C 123 GLY C 134 1 12 HELIX 26 26 GLY C 149 ARG C 166 1 18 HELIX 27 27 ASP C 167 ALA C 169 5 3 HELIX 28 28 HIS C 171 LYS C 186 1 16 HELIX 29 29 SER C 195 GLN C 209 1 15 HELIX 30 30 ASP D 3 HIS D 16 1 14 HELIX 31 31 ASN D 18 PHE D 26 1 9 HELIX 32 32 PRO D 29 CYS D 40 1 12 HELIX 33 33 THR D 93 GLY D 106 1 14 HELIX 34 34 GLY D 118 SER D 123 1 6 HELIX 35 35 SER D 123 GLY D 134 1 12 HELIX 36 36 SER D 153 ARG D 166 1 14 HELIX 37 37 ASP D 167 ALA D 169 5 3 HELIX 38 38 HIS D 171 LYS D 186 1 16 HELIX 39 39 SER D 195 THR D 210 1 16 SHEET 1 A 5 ILE A 84 ILE A 89 0 SHEET 2 A 5 LYS A 71 HIS A 78 -1 N LEU A 74 O GLU A 87 SHEET 3 A 5 ILE A 60 LEU A 68 -1 N THR A 66 O ILE A 73 SHEET 4 A 5 THR A 112 HIS A 114 1 O HIS A 114 N TRP A 61 SHEET 5 A 5 LYS A 136 GLN A 137 1 O LYS A 136 N VAL A 113 SHEET 1 B 5 ILE B 84 ILE B 89 0 SHEET 2 B 5 LYS B 71 HIS B 78 -1 N ALA B 76 O GLU B 85 SHEET 3 B 5 ILE B 60 LEU B 68 -1 N GLN B 62 O VAL B 77 SHEET 4 B 5 THR B 112 HIS B 114 1 O HIS B 114 N TRP B 61 SHEET 5 B 5 LYS B 136 GLU B 138 1 O LYS B 136 N VAL B 113 SHEET 1 C 2 LYS B 188 GLY B 189 0 SHEET 2 C 2 TYR B 194 SER B 195 -1 O TYR B 194 N GLY B 189 SHEET 1 D 5 ILE C 84 ILE C 89 0 SHEET 2 D 5 LYS C 71 HIS C 78 -1 N LEU C 74 O GLU C 87 SHEET 3 D 5 ILE C 60 LEU C 68 -1 N GLN C 62 O VAL C 77 SHEET 4 D 5 THR C 112 HIS C 114 1 O HIS C 114 N TRP C 61 SHEET 5 D 5 LYS C 136 GLU C 138 1 O LYS C 136 N VAL C 113 SHEET 1 E 5 ILE D 84 ILE D 89 0 SHEET 2 E 5 LYS D 71 HIS D 78 -1 N ALA D 76 O GLU D 85 SHEET 3 E 5 ILE D 60 LEU D 68 -1 N ASP D 64 O VAL D 75 SHEET 4 E 5 THR D 112 HIS D 114 1 O HIS D 114 N TRP D 61 SHEET 5 E 5 LYS D 136 GLU D 138 1 O GLU D 138 N VAL D 113 LINK NE2 HIS A 12 ZN ZN A 401 1555 1555 2.26 LINK ND1 HIS A 16 ZN ZN A 401 1555 1555 2.30 LINK O VAL A 37 K K A 451 1555 1555 3.40 LINK O ALA A 38 K K A 451 1555 1555 3.15 LINK SG CYS A 40 ZN ZN A 401 1555 1555 2.42 LINK O CYS A 40 K K A 451 1555 1555 3.17 LINK SG CYS A 43 ZN ZN A 401 1555 1555 2.47 LINK O CYS A 43 K K A 451 1555 1555 3.18 LINK NE2 HIS B 12 ZN ZN B 402 1555 1555 2.31 LINK ND1 HIS B 16 ZN ZN B 402 1555 1555 2.28 LINK O VAL B 37 K K B 452 1555 1555 3.44 LINK O ALA B 38 K K B 452 1555 1555 3.08 LINK SG CYS B 40 ZN ZN B 402 1555 1555 2.55 LINK O CYS B 40 K K B 452 1555 1555 3.05 LINK SG CYS B 43 ZN ZN B 402 1555 1555 2.39 LINK O CYS B 43 K K B 452 1555 1555 3.02 LINK NE2 HIS C 12 ZN ZN C 403 1555 1555 2.23 LINK ND1 HIS C 16 ZN ZN C 403 1555 1555 2.35 LINK O VAL C 37 K K C 453 1555 1555 3.46 LINK O ALA C 38 K K C 453 1555 1555 3.06 LINK SG CYS C 40 ZN ZN C 403 1555 1555 2.47 LINK O CYS C 40 K K C 453 1555 1555 3.03 LINK SG CYS C 43 ZN ZN C 403 1555 1555 2.47 LINK O CYS C 43 K K C 453 1555 1555 2.93 LINK K K C 453 O HOH C 517 1555 1555 3.38 LINK NE2 HIS D 12 ZN ZN D 404 1555 1555 2.19 LINK ND1 HIS D 16 ZN ZN D 404 1555 1555 2.31 LINK O VAL D 37 K K D 454 1555 1555 3.33 LINK O ALA D 38 K K D 454 1555 1555 3.08 LINK SG CYS D 40 ZN ZN D 404 1555 1555 2.53 LINK O CYS D 40 K K D 454 1555 1555 2.99 LINK SG CYS D 43 ZN ZN D 404 1555 1555 2.48 LINK O CYS D 43 K K D 454 1555 1555 3.12 LINK K K D 454 O HOH D 544 1555 1555 3.41 SITE 1 AC1 4 HIS A 12 HIS A 16 CYS A 40 CYS A 43 SITE 1 AC2 4 HIS B 12 HIS B 16 CYS B 40 CYS B 43 SITE 1 AC3 4 HIS C 12 HIS C 16 CYS C 40 CYS C 43 SITE 1 AC4 4 HIS D 12 HIS D 16 CYS D 40 CYS D 43 SITE 1 AC5 4 VAL A 37 ALA A 38 CYS A 40 CYS A 43 SITE 1 AC6 4 VAL B 37 ALA B 38 CYS B 40 CYS B 43 SITE 1 AC7 4 VAL C 37 ALA C 38 CYS C 40 CYS C 43 SITE 1 AC8 4 VAL D 37 ALA D 38 CYS D 40 CYS D 43 SITE 1 AC9 6 CYS A 65 THR A 66 HIS A 67 ASN A 155 SITE 2 AC9 6 LYS A 159 HIS D 171 SITE 1 BC1 3 THR B 66 HIS B 67 SER B 119 SITE 1 BC2 3 THR C 66 HIS C 67 LYS C 159 SITE 1 BC3 3 THR D 66 HIS D 67 LYS D 159 CRYST1 102.710 102.710 280.560 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003564 0.00000