data_1K71 # _entry.id 1K71 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1K71 NDB BD0056 RCSB RCSB014640 WWPDB D_1000014640 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2010-10-27 _pdbx_database_PDB_obs_spr.pdb_id 3L1Q _pdbx_database_PDB_obs_spr.replace_pdb_id 1K71 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB UDJ049 ;Parallel and Antiparallel (G.GC)2 Triple Helix Fragments in a Crystal Structure. ; unspecified NDB BD0006 ;B-DNA at Atomic Resolution Reveals Extended Hydration Patterns. ; unspecified NDB UDI030 'High-Resolution Structure of a DNA Helix Forming (C.G)*G Base Triplets.' unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1K71 _pdbx_database_status.recvd_initial_deposition_date 2001-10-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Uytterhoeven, K.' 1 'Van Meervelt, L.' 2 # _citation.id primary _citation.title 'A Triple Helical Fragment Containing a T.AT triplet at 2.56 Angstroms Resolution.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Uytterhoeven, K.' 1 primary 'Van Meervelt, L.' 2 # _cell.entry_id 1K71 _cell.length_a 27.135 _cell.length_b 41.502 _cell.length_c 52.688 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K71 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*GP*GP*CP*CP*TP*TP*AP*AP*GP*G)-3'" 3389.221 2 ? ? ? ? 2 water nat water 18.015 77 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DG)(DC)(DC)(DT)(DT)(DA)(DA)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can TGGCCTTAAGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DC n 1 5 DC n 1 6 DT n 1 7 DT n 1 8 DA n 1 9 DA n 1 10 DG n 1 11 DG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1K71 _struct_ref.pdbx_db_accession 1K71 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1K71 A 1 ? 11 ? 1K71 1 ? 11 ? 1 11 2 1 1K71 B 1 ? 11 ? 1K71 12 ? 22 ? 12 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 1K71 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_percent_sol 41.67 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'MPD, magnesium chloride, cacodylate, spermine, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 cacodylate ? ? ? 1 4 1 spermine ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-04-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.20 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, Hamburg' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.20 # _reflns.entry_id 1K71 _reflns.observed_criterion_sigma_I 5.0 _reflns.observed_criterion_sigma_F 2.5 _reflns.d_resolution_low 100.0 _reflns.d_resolution_high 2.56 _reflns.number_obs 2104 _reflns.number_all 2167 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.77 _reflns.B_iso_Wilson_estimate 73.41 _reflns.pdbx_redundancy 6.8 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.56 _reflns_shell.d_res_low 2.65 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.221 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 207 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1K71 _refine.ls_number_reflns_obs 1701 _refine.ls_number_reflns_all 2055 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 100.0 _refine.ls_d_res_high 2.56 _refine.ls_percent_reflns_obs 97.1 _refine.ls_R_factor_obs 0.2019 _refine.ls_R_factor_all 0.2156 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 73.64 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ;BD0006, B-DNA at atomic resolution reveals extended hydration patterns. ; _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'user defined' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 450 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 527 _refine_hist.d_res_high 2.56 _refine_hist.d_res_low 100.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.02 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.05 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1K71 _struct.title 'A Triple Helical fragment Containing a T.AT Triplet at 2.56 Angstrom Resolution.' _struct.pdbx_descriptor "5'-D(*TP*GP*GP*CP*CP*TP*TP*AP*AP*GP*G)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1K71 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, triple helix, T.AT triplet, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 4 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 4 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 4 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 5 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 5 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 5 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 6 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 6 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 7 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 7 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 8 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 8 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 9 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 9 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? hydrog16 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 10 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 10 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 10 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 11 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 11 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 11 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1K71 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1K71 _atom_sites.fract_transf_matrix[1][1] 0.036853 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024095 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018980 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n B 1 1 DT 1 12 12 DT T B . n B 1 2 DG 2 13 13 DG G B . n B 1 3 DG 3 14 14 DG G B . n B 1 4 DC 4 15 15 DC C B . n B 1 5 DC 5 16 16 DC C B . n B 1 6 DT 6 17 17 DT T B . n B 1 7 DT 7 18 18 DT T B . n B 1 8 DA 8 19 19 DA A B . n B 1 9 DA 9 20 20 DA A B . n B 1 10 DG 10 21 21 DG G B . n B 1 11 DG 11 22 22 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 27 27 HOH HOH A . C 2 HOH 2 30 30 HOH HOH A . C 2 HOH 3 31 31 HOH HOH A . C 2 HOH 4 32 32 HOH HOH A . C 2 HOH 5 35 35 HOH HOH A . C 2 HOH 6 38 38 HOH HOH A . C 2 HOH 7 39 39 HOH HOH A . C 2 HOH 8 40 40 HOH HOH A . C 2 HOH 9 41 41 HOH HOH A . C 2 HOH 10 42 42 HOH HOH A . C 2 HOH 11 44 44 HOH HOH A . C 2 HOH 12 45 45 HOH HOH A . C 2 HOH 13 46 46 HOH HOH A . C 2 HOH 14 48 48 HOH HOH A . C 2 HOH 15 50 50 HOH HOH A . C 2 HOH 16 51 51 HOH HOH A . C 2 HOH 17 53 53 HOH HOH A . C 2 HOH 18 56 56 HOH HOH A . C 2 HOH 19 57 57 HOH HOH A . C 2 HOH 20 58 58 HOH HOH A . C 2 HOH 21 61 61 HOH HOH A . C 2 HOH 22 62 62 HOH HOH A . C 2 HOH 23 63 63 HOH HOH A . C 2 HOH 24 69 69 HOH HOH A . C 2 HOH 25 78 78 HOH HOH A . C 2 HOH 26 79 79 HOH HOH A . C 2 HOH 27 80 80 HOH HOH A . C 2 HOH 28 81 81 HOH HOH A . C 2 HOH 29 83 83 HOH HOH A . C 2 HOH 30 90 90 HOH HOH A . C 2 HOH 31 92 92 HOH HOH A . C 2 HOH 32 95 95 HOH HOH A . D 2 HOH 1 23 23 HOH HOH B . D 2 HOH 2 24 24 HOH HOH B . D 2 HOH 3 25 25 HOH HOH B . D 2 HOH 4 26 26 HOH HOH B . D 2 HOH 5 28 28 HOH HOH B . D 2 HOH 6 29 29 HOH HOH B . D 2 HOH 7 33 33 HOH HOH B . D 2 HOH 8 34 34 HOH HOH B . D 2 HOH 9 36 36 HOH HOH B . D 2 HOH 10 37 37 HOH HOH B . D 2 HOH 11 43 43 HOH HOH B . D 2 HOH 12 47 47 HOH HOH B . D 2 HOH 13 49 49 HOH HOH B . D 2 HOH 14 52 52 HOH HOH B . D 2 HOH 15 54 54 HOH HOH B . D 2 HOH 16 55 55 HOH HOH B . D 2 HOH 17 59 59 HOH HOH B . D 2 HOH 18 60 60 HOH HOH B . D 2 HOH 19 64 64 HOH HOH B . D 2 HOH 20 65 65 HOH HOH B . D 2 HOH 21 66 66 HOH HOH B . D 2 HOH 22 67 67 HOH HOH B . D 2 HOH 23 68 68 HOH HOH B . D 2 HOH 24 70 70 HOH HOH B . D 2 HOH 25 71 71 HOH HOH B . D 2 HOH 26 72 72 HOH HOH B . D 2 HOH 27 73 73 HOH HOH B . D 2 HOH 28 74 74 HOH HOH B . D 2 HOH 29 75 75 HOH HOH B . D 2 HOH 30 76 76 HOH HOH B . D 2 HOH 31 77 77 HOH HOH B . D 2 HOH 32 82 82 HOH HOH B . D 2 HOH 33 84 84 HOH HOH B . D 2 HOH 34 85 85 HOH HOH B . D 2 HOH 35 86 86 HOH HOH B . D 2 HOH 36 87 87 HOH HOH B . D 2 HOH 37 88 88 HOH HOH B . D 2 HOH 38 89 89 HOH HOH B . D 2 HOH 39 91 91 HOH HOH B . D 2 HOH 40 93 93 HOH HOH B . D 2 HOH 41 94 94 HOH HOH B . D 2 HOH 42 96 96 HOH HOH B . D 2 HOH 43 97 97 HOH HOH B . D 2 HOH 44 98 98 HOH HOH B . D 2 HOH 45 99 99 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-11-11 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2010-10-27 4 'Structure model' 1 3 2011-07-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 4 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data collection' . ? 1 SCALEPACK 'data reduction' . ? 2 none 'model building' . ? 3 SHELXL-93 refinement . ? 4 DENZO 'data reduction' . ? 5 SCALEPACK 'data scaling' . ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.40 108.30 3.10 0.30 N 2 1 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 97.29 102.20 -4.91 0.70 N 3 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DC 4 ? ? 128.77 119.70 9.07 1.20 Y 4 1 "O5'" A DC 4 ? ? "C5'" A DC 4 ? ? "C4'" A DC 4 ? ? 103.16 109.40 -6.24 0.80 N 5 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.11 108.30 2.81 0.30 N 6 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.76 108.30 3.46 0.30 N 7 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.30 108.30 3.00 0.30 N 8 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.61 108.30 2.31 0.30 N 9 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.28 122.90 -3.62 0.60 N 10 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.18 108.30 1.88 0.30 N 11 1 "C1'" A DG 10 ? ? "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 102.19 110.10 -7.91 1.00 N 12 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.22 108.30 2.92 0.30 N 13 1 N3 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 131.90 128.60 3.30 0.50 N 14 1 N3 A DG 10 ? ? C4 A DG 10 ? ? N9 A DG 10 ? ? 122.10 126.00 -3.90 0.60 N 15 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.64 108.30 3.34 0.30 N 16 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 111.09 108.30 2.79 0.30 N 17 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.34 108.30 2.04 0.30 N 18 1 "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 103.57 109.40 -5.83 0.80 N 19 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 110.16 108.30 1.86 0.30 N 20 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.66 108.30 3.36 0.30 N 21 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 111.10 108.30 2.80 0.30 N 22 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 111.02 108.30 2.72 0.30 N 23 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.29 108.30 2.99 0.30 N 24 1 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.94 108.30 2.64 0.30 N 25 1 N1 B DA 19 ? ? C6 B DA 19 ? ? N6 B DA 19 ? ? 114.51 118.60 -4.09 0.60 N 26 1 C5 B DA 19 ? ? C6 B DA 19 ? ? N6 B DA 19 ? ? 128.99 123.70 5.29 0.80 N 27 1 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 111.89 108.30 3.59 0.30 N 28 1 "C3'" B DA 20 ? ? "O3'" B DA 20 ? ? P B DG 21 ? ? 127.24 119.70 7.54 1.20 Y 29 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 111.58 108.30 3.28 0.30 N 30 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.76 108.30 3.46 0.30 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1K71 'double helix' 1K71 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 4 1_555 B DG 11 1_555 0.669 -0.234 0.367 14.469 -19.921 1.056 1 A_DC4:DG22_B A 4 ? B 22 ? 19 1 1 A DC 5 1_555 B DG 10 1_555 -0.501 -0.214 -0.856 17.021 -14.759 1.424 2 A_DC5:DG21_B A 5 ? B 21 ? 19 1 1 A DT 6 1_555 B DA 9 1_555 -0.498 -0.030 -0.036 -4.211 -23.032 2.597 3 A_DT6:DA20_B A 6 ? B 20 ? 20 1 1 A DT 7 1_555 B DA 8 1_555 -0.707 -0.044 -0.299 9.165 -14.551 14.076 4 A_DT7:DA19_B A 7 ? B 19 ? 20 1 1 A DA 8 1_555 B DT 7 1_555 0.702 -0.154 0.752 10.951 -18.809 5.983 5 A_DA8:DT18_B A 8 ? B 18 ? 20 1 1 A DA 9 1_555 B DT 6 1_555 1.480 -0.288 0.492 1.278 -25.709 0.310 6 A_DA9:DT17_B A 9 ? B 17 ? 20 1 1 A DG 10 1_555 B DC 5 1_555 -0.623 -0.309 0.044 -17.025 -19.798 -1.431 7 A_DG10:DC16_B A 10 ? B 16 ? 19 1 1 A DG 11 1_555 B DC 4 1_555 -0.116 -0.256 1.080 -3.134 -6.231 -3.626 8 A_DG11:DC15_B A 11 ? B 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 4 1_555 B DG 11 1_555 A DC 5 1_555 B DG 10 1_555 -0.033 -0.155 3.182 11.298 7.023 24.943 -1.903 2.617 2.768 14.976 -24.093 28.219 1 AA_DC4DC5:DG21DG22_BB A 4 ? B 22 ? A 5 ? B 21 ? 1 A DC 5 1_555 B DG 10 1_555 A DT 6 1_555 B DA 9 1_555 0.593 -0.477 3.728 -0.917 9.534 38.950 -1.920 -0.984 3.506 14.041 1.351 40.065 2 AA_DC5DT6:DA20DG21_BB A 5 ? B 21 ? A 6 ? B 20 ? 1 A DT 6 1_555 B DA 9 1_555 A DT 7 1_555 B DA 8 1_555 0.440 -0.053 2.946 1.510 0.709 32.678 -0.205 -0.546 2.961 1.259 -2.681 32.719 3 AA_DT6DT7:DA19DA20_BB A 6 ? B 20 ? A 7 ? B 19 ? 1 A DT 7 1_555 B DA 8 1_555 A DA 8 1_555 B DT 7 1_555 -0.405 0.869 3.340 -5.911 2.092 47.395 0.901 0.013 3.397 2.589 7.316 47.784 4 AA_DT7DA8:DT18DA19_BB A 7 ? B 19 ? A 8 ? B 18 ? 1 A DA 8 1_555 B DT 7 1_555 A DA 9 1_555 B DT 6 1_555 -0.216 -0.526 3.535 0.321 -10.604 36.186 0.706 0.380 3.543 -16.637 -0.504 37.659 5 AA_DA8DA9:DT17DT18_BB A 8 ? B 18 ? A 9 ? B 17 ? 1 A DA 9 1_555 B DT 6 1_555 A DG 10 1_555 B DC 5 1_555 0.673 -0.945 3.518 5.237 3.350 24.354 -3.237 0.117 3.426 7.779 -12.163 25.123 6 AA_DA9DG10:DC16DT17_BB A 9 ? B 17 ? A 10 ? B 16 ? 1 A DG 10 1_555 B DC 5 1_555 A DG 11 1_555 B DC 4 1_555 0.377 -0.553 2.761 -5.887 2.534 39.569 -1.048 -1.110 2.642 3.714 8.626 40.064 7 AA_DG10DG11:DC15DC16_BB A 10 ? B 16 ? A 11 ? B 15 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #