HEADER TRANSCRIPTION 18-OCT-01 1K74
TITLE THE 2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF
TITLE 2 THE HUMAN PPARGAMMA AND RXRALPHA LIGAND BINDING DOMAINS RESPECTIVELY
TITLE 3 BOUND WITH GW409544 AND 9-CIS RETINOIC ACID AND CO-ACTIVATOR
TITLE 4 PEPTIDES.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN - RESIDUES 225 - 462;
COMPND 5 SYNONYM: RXRALPHA;
COMPND 6 ENGINEERED: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA;
COMPND 9 CHAIN: D;
COMPND 10 FRAGMENT: LIGAND BINDING DOMAIN RESIDUES - 206 - 477;
COMPND 11 SYNONYM: PPARGAMMA;
COMPND 12 ENGINEERED: YES;
COMPND 13 MOL_ID: 3;
COMPND 14 MOLECULE: STEROID RECEPTOR COACTIVATOR;
COMPND 15 CHAIN: B, E;
COMPND 16 FRAGMENT: SRC-1 PEPTIDE;
COMPND 17 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PACYC184;
SOURCE 8 MOL_ID: 2;
SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 10 ORGANISM_COMMON: HUMAN;
SOURCE 11 ORGANISM_TAXID: 9606;
SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 14 EXPRESSION_SYSTEM_VECTOR: PRSET;
SOURCE 15 MOL_ID: 3;
SOURCE 16 SYNTHETIC: YES;
SOURCE 17 OTHER_DETAILS: CHEMICALLY SYNTHESIZED 25MER PORTION OF THE HUMAN
SOURCE 18 SRC-1 COACTIVATOR PEPTIDE.
KEYWDS THE HETERODIMER OF THE NUCLEAR RECEPTOR LIGAND BINDING DOMAINS OF
KEYWDS 2 RXRALPHA AND PPARGAMMA BOUND RESPECTIVELY WITH 9-CIS RETINOIC ACID
KEYWDS 3 AND GW409544 AND COACTIVATOR PEPTIDES, TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR H.E.XU,M.H.LAMBERT,V.G.MONTANA,L.B.MOORE,J.L.COLLINS,J.A.OPLINGER,
AUTHOR 2 S.A.KLIEWER,R.T.GAMPE JR.,D.D.MCKEE,J.T.MOORE,T.M.WILLSON
REVDAT 4 07-FEB-24 1K74 1 REMARK SEQADV
REVDAT 3 26-DEC-12 1K74 1 HET HETNAM VERSN
REVDAT 2 24-FEB-09 1K74 1 VERSN
REVDAT 1 05-DEC-01 1K74 0
JRNL AUTH H.E.XU,M.H.LAMBERT,V.G.MONTANA,K.D.PLUNKET,L.B.MOORE,
JRNL AUTH 2 J.L.COLLINS,J.A.OPLINGER,S.A.KLIEWER,R.T.GAMPE JR.,
JRNL AUTH 3 D.D.MCKEE,J.T.MOORE,T.M.WILLSON
JRNL TITL STRUCTURAL DETERMINANTS OF LIGAND BINDING SELECTIVITY
JRNL TITL 2 BETWEEN THE PEROXISOME PROLIFERATOR-ACTIVATED RECEPTORS.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 13919 2001
JRNL REFN ISSN 0027-8424
JRNL PMID 11698662
JRNL DOI 10.1073/PNAS.241410198
REMARK 2
REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNX
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS
REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA,
REMARK 3 : YIP,DZAKULA)
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 23791
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : NULL
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING + TEST SET) : 0.238
REMARK 3 R VALUE (WORKING SET) : 0.238
REMARK 3 FREE R VALUE : 0.279
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900
REMARK 3 FREE R VALUE TEST SET COUNT : 2347
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA.
REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL
REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE (NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL
REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL
REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 23791
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4137
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 60
REMARK 3 SOLVENT ATOMS : 208
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.011
REMARK 3 BOND ANGLES (DEGREES) : 1.500
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : NULL
REMARK 3 KSOL : NULL
REMARK 3 BSOL : NULL
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1K74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-01.
REMARK 100 THE DEPOSITION ID IS D_1000014643.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : NULL
REMARK 200 TEMPERATURE (KELVIN) : 93
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 17-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24986
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300
REMARK 200 RESOLUTION RANGE LOW (A) : 20.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.05700
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: AMORE
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.25
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4K, NASCN, ETHYLENE GLYCOL, PH 7.5,
REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.31000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.43000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.55000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 107.43000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.31000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.55000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, E
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 225
REMARK 465 ALA A 226
REMARK 465 HIS A 459
REMARK 465 GLN A 460
REMARK 465 MET A 461
REMARK 465 THR A 462
REMARK 465 MET D 195
REMARK 465 LYS D 196
REMARK 465 LYS D 197
REMARK 465 GLY D 198
REMARK 465 HIS D 199
REMARK 465 HIS D 200
REMARK 465 HIS D 201
REMARK 465 HIS D 202
REMARK 465 HIS D 203
REMARK 465 HIS D 204
REMARK 465 GLY D 205
REMARK 465 CYS B 619
REMARK 465 PRO B 620
REMARK 465 SER B 621
REMARK 465 SER B 622
REMARK 465 HIS B 623
REMARK 465 SER B 624
REMARK 465 SER B 625
REMARK 465 LEU B 626
REMARK 465 THR B 627
REMARK 465 GLU B 628
REMARK 465 ARG B 629
REMARK 465 GLY B 640
REMARK 465 SER B 641
REMARK 465 PRO B 642
REMARK 465 SER B 643
REMARK 465 CYS E 676
REMARK 465 PRO E 677
REMARK 465 SER E 678
REMARK 465 SER E 679
REMARK 465 HIS E 680
REMARK 465 SER E 681
REMARK 465 SER E 682
REMARK 465 LEU E 683
REMARK 465 THR E 684
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ASN A 227 CG OD1 ND2
REMARK 470 LYS A 245 CB CG CD CE NZ
REMARK 470 THR A 246 CB OG1 CG2
REMARK 470 GLU A 247 CB CG CD OE1 OE2
REMARK 470 THR A 248 CB OG1 CG2
REMARK 470 TYR A 249 CB CG CD1 CD2 CE1 CE2 CZ
REMARK 470 TYR A 249 OH
REMARK 470 VAL A 250 CB CG1 CG2
REMARK 470 GLU A 251 CB CG CD OE1 OE2
REMARK 470 ALA A 252 CB
REMARK 470 ASN A 253 CB CG OD1 ND2
REMARK 470 MET A 254 CB CG SD CE
REMARK 470 LEU A 256 CB CG CD1 CD2
REMARK 470 ASN A 257 CB CG OD1 ND2
REMARK 470 PRO A 258 CB CG CD
REMARK 470 SER A 259 CB OG
REMARK 470 SER A 260 CB OG
REMARK 470 PRO A 261 CB CG CD
REMARK 470 ASN A 262 CB CG OD1 ND2
REMARK 470 ASP A 263 CB CG OD1 OD2
REMARK 470 PRO D 206 CG CD
REMARK 470 GLU D 259 CG CD OE1 OE2
REMARK 470 LYS D 261 CG CD CE NZ
REMARK 470 ILE D 262 CG1 CG2 CD1
REMARK 470 GLN D 271 CG CD OE1 NE2
REMARK 470 LYS B 631 CG CD CE NZ
REMARK 470 LYS E 688 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O GLN D 273 N LYS D 275 2.06
REMARK 500 O GLY D 258 N ASP D 260 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OH TYR D 250 O PRO D 269 4455 2.03
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 PRO A 244 C - N - CA ANGL. DEV. = 22.6 DEGREES
REMARK 500 PRO A 244 C - N - CD ANGL. DEV. = -23.1 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 228 44.33 -104.97
REMARK 500 ASP A 229 -64.88 76.53
REMARK 500 GLU A 243 -131.50 -68.73
REMARK 500 PRO A 244 -143.11 37.08
REMARK 500 LYS A 245 47.57 89.90
REMARK 500 THR A 246 154.42 88.12
REMARK 500 GLU A 247 -59.28 69.88
REMARK 500 THR A 248 0.47 -62.05
REMARK 500 TYR A 249 57.08 -110.22
REMARK 500 VAL A 250 -14.24 -161.33
REMARK 500 ALA A 252 51.77 -149.91
REMARK 500 MET A 254 6.45 -168.61
REMARK 500 LEU A 256 -144.34 91.01
REMARK 500 ASN A 257 91.52 121.71
REMARK 500 SER A 259 -115.80 94.51
REMARK 500 SER A 260 33.60 125.07
REMARK 500 ASP A 263 115.83 174.79
REMARK 500 HIS A 288 -13.10 79.00
REMARK 500 ASP A 322 70.90 23.70
REMARK 500 ALA A 344 -63.59 70.65
REMARK 500 LEU A 441 38.88 -73.18
REMARK 500 ILE A 442 -24.99 -158.31
REMARK 500 ASP A 444 96.10 64.78
REMARK 500 THR A 445 81.30 57.70
REMARK 500 PRO A 446 -175.56 -47.70
REMARK 500 ILE A 447 -158.94 -109.58
REMARK 500 PHE A 450 -62.33 97.11
REMARK 500 ALA A 457 141.58 73.26
REMARK 500 ASP D 243 57.92 161.47
REMARK 500 LYS D 244 121.80 66.29
REMARK 500 TYR D 250 -4.19 -140.57
REMARK 500 GLU D 259 65.52 -25.07
REMARK 500 ILE D 262 26.61 86.69
REMARK 500 LYS D 263 -123.69 -145.10
REMARK 500 LYS D 265 -127.48 -74.82
REMARK 500 ILE D 267 88.02 -52.17
REMARK 500 THR D 268 -51.29 -122.54
REMARK 500 GLN D 271 159.08 104.68
REMARK 500 GLU D 272 83.54 -155.97
REMARK 500 GLN D 273 -99.31 58.19
REMARK 500 SER D 274 -47.88 41.48
REMARK 500 LYS D 275 48.79 -140.76
REMARK 500 GLU D 276 152.77 79.89
REMARK 500 ARG D 280 -73.72 -49.03
REMARK 500 SER D 342 72.54 75.66
REMARK 500 GLU D 343 8.50 53.01
REMARK 500 LYS D 358 -124.89 33.24
REMARK 500 ASP D 462 54.13 -97.87
REMARK 500 SER D 464 109.47 53.67
REMARK 500 LEU D 476 -115.91 -96.85
REMARK 500
REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9CR A 463
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 544 D 478
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1FM6 RELATED DB: PDB
REMARK 900 RELATED ID: 1FM9 RELATED DB: PDB
REMARK 900 RELATED ID: 1K7L RELATED DB: PDB
DBREF 1K74 A 225 462 UNP P19793 RXRA_HUMAN 225 462
DBREF 1K74 D 206 477 UNP P37231 PPARG_HUMAN 234 505
DBREF 1K74 B 619 643 UNP O43792 O43792_TOBAC 675 701
DBREF 1K74 E 676 700 UNP O43792 O43792_TOBAC 675 701
SEQADV 1K74 MET D 195 UNP P37231 EXPRESSION TAG
SEQADV 1K74 LYS D 196 UNP P37231 EXPRESSION TAG
SEQADV 1K74 LYS D 197 UNP P37231 EXPRESSION TAG
SEQADV 1K74 GLY D 198 UNP P37231 EXPRESSION TAG
SEQADV 1K74 HIS D 199 UNP P37231 EXPRESSION TAG
SEQADV 1K74 HIS D 200 UNP P37231 EXPRESSION TAG
SEQADV 1K74 HIS D 201 UNP P37231 EXPRESSION TAG
SEQADV 1K74 HIS D 202 UNP P37231 EXPRESSION TAG
SEQADV 1K74 HIS D 203 UNP P37231 EXPRESSION TAG
SEQADV 1K74 HIS D 204 UNP P37231 EXPRESSION TAG
SEQADV 1K74 GLY D 205 UNP P37231 EXPRESSION TAG
SEQRES 1 A 238 SER ALA ASN GLU ASP MET PRO VAL GLU ARG ILE LEU GLU
SEQRES 2 A 238 ALA GLU LEU ALA VAL GLU PRO LYS THR GLU THR TYR VAL
SEQRES 3 A 238 GLU ALA ASN MET GLY LEU ASN PRO SER SER PRO ASN ASP
SEQRES 4 A 238 PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU
SEQRES 5 A 238 PHE THR LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE
SEQRES 6 A 238 SER GLU LEU PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG
SEQRES 7 A 238 ALA GLY TRP ASN GLU LEU LEU ILE ALA SER PHE SER HIS
SEQRES 8 A 238 ARG SER ILE ALA VAL LYS ASP GLY ILE LEU LEU ALA THR
SEQRES 9 A 238 GLY LEU HIS VAL HIS ARG ASN SER ALA HIS SER ALA GLY
SEQRES 10 A 238 VAL GLY ALA ILE PHE ASP ARG VAL LEU THR GLU LEU VAL
SEQRES 11 A 238 SER LYS MET ARG ASP MET GLN MET ASP LYS THR GLU LEU
SEQRES 12 A 238 GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO ASP SER
SEQRES 13 A 238 LYS GLY LEU SER ASN PRO ALA GLU VAL GLU ALA LEU ARG
SEQRES 14 A 238 GLU LYS VAL TYR ALA SER LEU GLU ALA TYR CYS LYS HIS
SEQRES 15 A 238 LYS TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS LEU LEU
SEQRES 16 A 238 LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU LYS CYS
SEQRES 17 A 238 LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP THR
SEQRES 18 A 238 PRO ILE ASP THR PHE LEU MET GLU MET LEU GLU ALA PRO
SEQRES 19 A 238 HIS GLN MET THR
SEQRES 1 D 283 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS GLY PRO GLU
SEQRES 2 D 283 SER ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR ASP
SEQRES 3 D 283 SER TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS ALA
SEQRES 4 D 283 ARG ALA ILE LEU THR GLY LYS THR THR ASP LYS SER PRO
SEQRES 5 D 283 PHE VAL ILE TYR ASP MET ASN SER LEU MET MET GLY GLU
SEQRES 6 D 283 ASP LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN GLU
SEQRES 7 D 283 GLN SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY CYS
SEQRES 8 D 283 GLN PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR GLU
SEQRES 9 D 283 TYR ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP LEU
SEQRES 10 D 283 ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU
SEQRES 11 D 283 ILE ILE TYR THR MET LEU ALA SER LEU MET ASN LYS ASP
SEQRES 12 D 283 GLY VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR ARG
SEQRES 13 D 283 GLU PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP PHE
SEQRES 14 D 283 MET GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA
SEQRES 15 D 283 LEU GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE ALA
SEQRES 16 D 283 VAL ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU ASN
SEQRES 17 D 283 VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU GLN
SEQRES 18 D 283 ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SER
SEQRES 19 D 283 SER GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR ASP
SEQRES 20 D 283 LEU ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU GLN
SEQRES 21 D 283 VAL ILE LYS LYS THR GLU THR ASP MET SER LEU HIS PRO
SEQRES 22 D 283 LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR
SEQRES 1 B 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS
SEQRES 2 B 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER
SEQRES 1 E 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS
SEQRES 2 E 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER
HET 9CR A 463 22
HET 544 D 478 38
HETNAM 9CR (9CIS)-RETINOIC ACID
HETNAM 544 2-(1-METHYL-3-OXO-3-PHENYL-PROPYLAMINO)-3-{4-[2-(5-
HETNAM 2 544 METHYL-2-PHENYL-OXAZOL-4-YL)-ETHOXY]-PHENYL}-PROPIONIC
HETNAM 3 544 ACID
HETSYN 544 GW409544
FORMUL 5 9CR C20 H28 O2
FORMUL 6 544 C31 H30 N2 O5
FORMUL 7 HOH *208(H2 O)
HELIX 1 1 PRO A 231 VAL A 242 1 12
HELIX 2 2 ASP A 263 ARG A 285 1 23
HELIX 3 3 HIS A 288 LEU A 292 5 5
HELIX 4 4 PRO A 293 SER A 317 1 25
HELIX 5 5 ILE A 318 VAL A 320 5 3
HELIX 6 6 ARG A 334 ALA A 340 1 7
HELIX 7 7 ALA A 344 LEU A 353 1 10
HELIX 8 8 LEU A 353 MET A 360 1 8
HELIX 9 9 ASP A 363 PHE A 376 1 14
HELIX 10 10 ASN A 385 TYR A 408 1 24
HELIX 11 11 GLY A 413 LEU A 420 1 8
HELIX 12 12 ARG A 421 PHE A 437 1 17
HELIX 13 13 PHE A 450 LEU A 455 1 6
HELIX 14 14 GLU D 207 PHE D 226 1 20
HELIX 15 15 THR D 229 THR D 238 1 10
HELIX 16 16 ASP D 251 GLY D 258 1 8
HELIX 17 17 GLU D 276 LYS D 301 1 26
HELIX 18 18 GLY D 305 LEU D 309 5 5
HELIX 19 19 ASP D 310 LEU D 333 1 24
HELIX 20 20 ARG D 350 LEU D 356 1 7
HELIX 21 21 ARG D 357 ASP D 362 5 6
HELIX 22 22 PHE D 363 ALA D 376 1 14
HELIX 23 23 ASP D 380 LEU D 393 1 14
HELIX 24 24 ASN D 402 HIS D 425 1 24
HELIX 25 25 GLN D 430 GLU D 460 1 31
HELIX 26 26 HIS D 466 LYS D 474 1 9
HELIX 27 27 HIS B 630 GLN B 638 1 9
HELIX 28 28 HIS E 687 GLU E 696 1 10
SHEET 1 A 2 GLY A 323 LEU A 325 0
SHEET 2 A 2 HIS A 331 HIS A 333 -1 O VAL A 332 N ILE A 324
SHEET 1 B 4 PHE D 247 ILE D 249 0
SHEET 2 B 4 GLY D 346 THR D 349 1 O PHE D 347 N ILE D 249
SHEET 3 B 4 GLY D 338 ILE D 341 -1 N VAL D 339 O MET D 348
SHEET 4 B 4 MET D 334 ASN D 335 -1 N ASN D 335 O GLY D 338
CISPEP 1 GLU A 243 PRO A 244 0 1.10
SITE 1 AC1 12 ILE A 268 ALA A 271 ALA A 272 GLN A 275
SITE 2 AC1 12 TRP A 305 PHE A 313 ARG A 316 LEU A 326
SITE 3 AC1 12 ALA A 327 CYS A 432 HIS A 435 LEU A 436
SITE 1 AC2 15 ARG D 280 ILE D 281 PHE D 282 CYS D 285
SITE 2 AC2 15 SER D 289 HIS D 323 LEU D 330 ILE D 341
SITE 3 AC2 15 PHE D 360 PHE D 363 MET D 364 HIS D 449
SITE 4 AC2 15 TYR D 473 HOH D 511 HOH D 527
CRYST1 46.620 55.100 214.860 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021450 0.000000 0.000000 0.00000
SCALE2 0.000000 0.018149 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004654 0.00000