HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-OCT-01 1K7K TITLE CRYSTAL STRUCTURE OF RDGB- INOSINE TRIPHOSPHATE TITLE 2 PYROPHOSPHATASE FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YGGV; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MAD, HIS-TAG, LARGE GROOVE, DISORDERED SE-MET, STRUCTURAL KEYWDS 2 GENOMICS, PUTATIVE RIBOSOMAL PROTEIN, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.SANISHVILI,A.JOACHIMIAK,A.EDWARDS,A.SAVCHENKO,T.SKARINA, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 30-DEC-08 1K7K 1 JRNL VERSN REVDAT 3 15-MAY-07 1K7K 1 TITLE REVDAT 2 18-JAN-05 1K7K 1 AUTHOR KEYWDS REMARK REVDAT 1 14-AUG-02 1K7K 0 JRNL AUTH A.SAVCHENKO,M.PROUDFOOT,T.SKARINA,A.SINGER, JRNL AUTH 2 O.LITVINOVA,R.SANISHVILI,G.BROWN,N.CHIRGADZE, JRNL AUTH 3 A.F.YAKUNIN JRNL TITL MOLECULAR BASIS OF THE ANTIMUTAGENIC ACTIVITY OF JRNL TITL 2 THE HOUSE-CLEANING INOSINE TRIPHOSPHATE JRNL TITL 3 PYROPHOSPHATASE RDGB FROM ESCHERICHIA COLI. JRNL REF J.MOL.BIOL. V. 374 1091 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17976651 JRNL DOI 10.1016/J.JMB.2007.10.012 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : REFMAC DEFAULTS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 35524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1875 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1701 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.585 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED MAXIMUM LIKELIHOOD METHOD REMARK 4 REMARK 4 1K7K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB014659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-01; 10-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937, 0.97918; 1.03321 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111); REMARK 200 SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : DOUBLE-CRYSTAL MONOCHROMATOR, REMARK 200 MIRROR; DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR, MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE; CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4K, AM. ACETATE, NA-CITRATE, PH REMARK 280 5.8, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.20000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.09000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.30000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.09000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.10000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.09000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.09000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.30000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.09000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.09000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.10000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MOLECULE IS ALONGATED, WITH DOMINANT BETA SHEET REMARK 300 EXTENDING THROUGHOUT. THERE ARE ADDITIONAL BETA STRANDS AT BOTH REMARK 300 ENDS OF THE BETA SHEET. SEVERAL ALPHA HELICES SURROUND THE ENDS REMARK 300 OF BETA-SHEET, LEAVING LARGE GROOVE ON ONE SIDE OF THE PLANE OF REMARK 300 THE SHEET. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -11 OG REMARK 470 ARG A -8 CG CD NE CZ NH1 NH2 REMARK 470 GLU A -7 CB CG CD OE1 OE2 REMARK 470 LEU A -5 CG CD1 CD2 REMARK 470 TYR A -4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A -3 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 0 CB CG ND1 CD2 CE1 NE2 REMARK 470 SER A 22 OG REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 100 O HOH A 405 2.08 REMARK 500 NZ LYS A 107 O HOH A 286 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 0 N - CA - C ANGL. DEV. = 29.6 DEGREES REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 VAL A 29 CG1 - CB - CG2 ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -10 148.42 -29.71 REMARK 500 GLU A -7 -14.75 111.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 220 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A 235 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A 337 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 344 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH A 423 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 442 DISTANCE = 5.66 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC074 RELATED DB: TARGETDB DBREF 1K7K A 1 197 UNP P52061 HAM1_ECOLI 1 197 SEQADV 1K7K MET A -21 UNP P52061 EXPRESSION TAG SEQADV 1K7K GLY A -20 UNP P52061 EXPRESSION TAG SEQADV 1K7K SER A -19 UNP P52061 EXPRESSION TAG SEQADV 1K7K SER A -18 UNP P52061 EXPRESSION TAG SEQADV 1K7K HIS A -17 UNP P52061 EXPRESSION TAG SEQADV 1K7K HIS A -16 UNP P52061 EXPRESSION TAG SEQADV 1K7K HIS A -15 UNP P52061 EXPRESSION TAG SEQADV 1K7K HIS A -14 UNP P52061 EXPRESSION TAG SEQADV 1K7K HIS A -13 UNP P52061 EXPRESSION TAG SEQADV 1K7K HIS A -12 UNP P52061 EXPRESSION TAG SEQADV 1K7K SER A -11 UNP P52061 EXPRESSION TAG SEQADV 1K7K SER A -10 UNP P52061 EXPRESSION TAG SEQADV 1K7K GLY A -9 UNP P52061 EXPRESSION TAG SEQADV 1K7K ARG A -8 UNP P52061 EXPRESSION TAG SEQADV 1K7K GLU A -7 UNP P52061 EXPRESSION TAG SEQADV 1K7K ASN A -6 UNP P52061 EXPRESSION TAG SEQADV 1K7K LEU A -5 UNP P52061 EXPRESSION TAG SEQADV 1K7K TYR A -4 UNP P52061 EXPRESSION TAG SEQADV 1K7K PHE A -3 UNP P52061 EXPRESSION TAG SEQADV 1K7K GLN A -2 UNP P52061 EXPRESSION TAG SEQADV 1K7K GLY A -1 UNP P52061 EXPRESSION TAG SEQADV 1K7K HIS A 0 UNP P52061 EXPRESSION TAG SEQADV 1K7K MSE A 1 UNP P52061 MET 1 MODIFIED RESIDUE SEQADV 1K7K MSE A 106 UNP P52061 MET 106 MODIFIED RESIDUE SEQADV 1K7K GLY A 198 UNP P52061 CLONING ARTIFACT SEQADV 1K7K SER A 199 UNP P52061 CLONING ARTIFACT SEQRES 1 A 221 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 221 ARG GLU ASN LEU TYR PHE GLN GLY HIS MSE GLN LYS VAL SEQRES 3 A 221 VAL LEU ALA THR GLY ASN VAL GLY LYS VAL ARG GLU LEU SEQRES 4 A 221 ALA SER LEU LEU SER ASP PHE GLY LEU ASP ILE VAL ALA SEQRES 5 A 221 GLN THR ASP LEU GLY VAL ASP SER ALA GLU GLU THR GLY SEQRES 6 A 221 LEU THR PHE ILE GLU ASN ALA ILE LEU LYS ALA ARG HIS SEQRES 7 A 221 ALA ALA LYS VAL THR ALA LEU PRO ALA ILE ALA ASP ASP SEQRES 8 A 221 SER GLY LEU ALA VAL ASP VAL LEU GLY GLY ALA PRO GLY SEQRES 9 A 221 ILE TYR SER ALA ARG TYR SER GLY GLU ASP ALA THR ASP SEQRES 10 A 221 GLN LYS ASN LEU GLN LYS LEU LEU GLU THR MSE LYS ASP SEQRES 11 A 221 VAL PRO ASP ASP GLN ARG GLN ALA ARG PHE HIS CYS VAL SEQRES 12 A 221 LEU VAL TYR LEU ARG HIS ALA GLU ASP PRO THR PRO LEU SEQRES 13 A 221 VAL CYS HIS GLY SER TRP PRO GLY VAL ILE THR ARG GLU SEQRES 14 A 221 PRO ALA GLY THR GLY GLY PHE GLY TYR ASP PRO ILE PHE SEQRES 15 A 221 PHE VAL PRO SER GLU GLY LYS THR ALA ALA GLU LEU THR SEQRES 16 A 221 ARG GLU GLU LYS SER ALA ILE SER HIS ARG GLY GLN ALA SEQRES 17 A 221 LEU LYS LEU LEU LEU ASP ALA LEU ARG ASN GLY GLY SER MODRES 1K7K MSE A 1 MET SELENOMETHIONINE MODRES 1K7K MSE A 106 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 106 12 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 HOH *252(H2 O) HELIX 1 1 ASN A 10 SER A 22 1 13 HELIX 2 2 THR A 45 ALA A 62 1 18 HELIX 3 3 VAL A 76 GLY A 78 5 3 HELIX 4 4 PRO A 81 SER A 85 5 5 HELIX 5 5 THR A 94 MSE A 106 1 13 HELIX 6 6 PRO A 110 GLN A 113 5 4 HELIX 7 7 TYR A 156 PRO A 158 5 3 HELIX 8 8 VAL A 162 GLY A 166 5 5 HELIX 9 9 THR A 168 LEU A 172 5 5 HELIX 10 10 THR A 173 SER A 181 1 9 HELIX 11 11 SER A 181 ASN A 196 1 16 SHEET 1 A 6 LEU A 26 ALA A 30 0 SHEET 2 A 6 GLN A 2 LEU A 6 1 N LEU A 6 O VAL A 29 SHEET 3 A 6 ALA A 65 VAL A 74 1 O ILE A 66 N VAL A 5 SHEET 4 A 6 GLN A 115 LEU A 125 -1 O VAL A 123 N ALA A 67 SHEET 5 A 6 LEU A 134 ILE A 144 -1 O CYS A 136 N LEU A 122 SHEET 6 A 6 PHE A 160 PHE A 161 -1 O PHE A 161 N VAL A 143 LINK C AHIS A 0 N AMSE A 1 1555 1555 1.33 LINK C BHIS A 0 N BMSE A 1 1555 1555 1.32 LINK C AMSE A 1 N AGLN A 2 1555 1555 1.33 LINK C BMSE A 1 N BGLN A 2 1555 1555 1.33 LINK C THR A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N LYS A 107 1555 1555 1.33 CISPEP 1 ALA A 80 PRO A 81 0 -3.81 CRYST1 78.180 78.180 80.400 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012791 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012438 0.00000