HEADER DNA BINDING PROTEIN 28-OCT-01 1K99 TITLE SOLUTION STRUCTURE OF THE FIRST HMG BOX IN HUMAN UPSTREAM BINDING TITLE 2 FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPSTREAM BINDING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG BOX 1; COMPND 5 SYNONYM: NUCLEOLAR TRANSCRIPTION FACTOR 1, HUBF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HUBF(103-192); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS ALPHA-HELIX, L-SHAPE, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.XU,W.YANG,J.WU,Y.SHI REVDAT 7 29-MAY-24 1K99 1 REMARK REVDAT 6 21-DEC-22 1K99 1 SEQADV REVDAT 5 23-FEB-22 1K99 1 REMARK SEQADV REVDAT 4 24-FEB-09 1K99 1 VERSN REVDAT 3 04-DEC-02 1K99 1 REMARK REVDAT 2 15-MAY-02 1K99 1 JRNL REVDAT 1 14-NOV-01 1K99 0 JRNL AUTH Y.XU,W.YANG,J.WU,Y.SHI JRNL TITL SOLUTION STRUCTURE OF THE FIRST HMG BOX DOMAIN IN HUMAN JRNL TITL 2 UPSTREAM BINDING FACTOR. JRNL REF BIOCHEMISTRY V. 41 5415 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 11969401 JRNL DOI 10.1021/BI015977A REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K99 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014719. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 305; 290 REMARK 210 PH : 5.5; 5.5; 5.5 REMARK 210 IONIC STRENGTH : 10MM; 10MM; 10MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM HUBF HMG BOX1 U-15N; 10MM REMARK 210 NAPO4 BUFFER PH5.5; 90% H2O, 10% REMARK 210 D2O; 3MM HUBF HMG BOX1 U-15N,13C; REMARK 210 10MM NAPO4 BUFFER PH5.5; 90% REMARK 210 H2O, 10%D2O; 3MM HUBF HMG BOX1 U- REMARK 210 15N; 10MM NAPO4 BUFFER PH5.5; REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 1.3, NMRPIPE, PIPP REMARK 210 METHOD USED : SIMULATED ANNEALING; TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 92 REMARK 465 GLU A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 141.15 -170.07 REMARK 500 1 LEU A 4 139.48 -172.33 REMARK 500 1 LYS A 5 -158.25 -122.39 REMARK 500 1 ASP A 9 93.08 59.81 REMARK 500 1 PHE A 10 78.70 59.52 REMARK 500 1 PRO A 14 173.95 -49.27 REMARK 500 1 HIS A 33 59.64 -115.32 REMARK 500 1 MET A 36 -150.36 -126.52 REMARK 500 1 SER A 37 -57.85 -139.05 REMARK 500 1 ASN A 38 -24.13 169.79 REMARK 500 1 PRO A 53 24.47 -73.49 REMARK 500 1 GLU A 54 8.50 58.93 REMARK 500 1 ASP A 81 92.08 -54.90 REMARK 500 1 PRO A 83 109.65 -59.70 REMARK 500 1 ASP A 84 87.82 -151.78 REMARK 500 1 ILE A 86 94.19 28.66 REMARK 500 1 ASN A 88 87.07 -177.09 REMARK 500 1 ALA A 89 51.93 -107.51 REMARK 500 2 LEU A 4 -172.86 -176.70 REMARK 500 2 PRO A 8 -170.38 -54.22 REMARK 500 2 PHE A 10 110.27 60.66 REMARK 500 2 LYS A 13 -61.87 -178.22 REMARK 500 2 PRO A 14 174.57 -56.05 REMARK 500 2 HIS A 33 52.07 -119.49 REMARK 500 2 MET A 36 -156.04 -127.20 REMARK 500 2 SER A 37 -57.46 -127.02 REMARK 500 2 ASN A 38 -24.54 167.83 REMARK 500 2 PRO A 53 25.28 -70.56 REMARK 500 2 GLU A 54 7.95 59.42 REMARK 500 2 HIS A 82 -54.63 -179.07 REMARK 500 2 ASP A 84 -79.51 -119.77 REMARK 500 2 LEU A 85 141.13 66.76 REMARK 500 2 ALA A 89 48.47 -87.15 REMARK 500 2 LYS A 90 -83.68 60.48 REMARK 500 3 LEU A 4 109.72 64.89 REMARK 500 3 LYS A 6 -171.06 55.85 REMARK 500 3 HIS A 7 172.86 57.04 REMARK 500 3 PRO A 8 64.45 -66.51 REMARK 500 3 ASP A 9 -47.00 -159.09 REMARK 500 3 PRO A 11 102.09 -53.16 REMARK 500 3 LYS A 13 -60.47 -177.84 REMARK 500 3 PRO A 14 173.52 -51.42 REMARK 500 3 HIS A 33 61.09 -114.46 REMARK 500 3 PRO A 53 22.28 -72.26 REMARK 500 3 GLU A 54 12.05 56.66 REMARK 500 3 GLU A 80 -81.46 -51.24 REMARK 500 3 ASP A 81 -168.49 50.43 REMARK 500 3 ASP A 84 34.69 -168.52 REMARK 500 3 GLN A 87 149.36 171.62 REMARK 500 3 ASN A 88 -51.41 76.20 REMARK 500 REMARK 500 THIS ENTRY HAS 357 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1K99 A 2 91 UNP P17480 UBF1_HUMAN 103 192 SEQADV 1K99 MET A 1 UNP P17480 INITIATING METHIONINE SEQADV 1K99 LEU A 92 UNP P17480 EXPRESSION TAG SEQADV 1K99 GLU A 93 UNP P17480 EXPRESSION TAG SEQADV 1K99 HIS A 94 UNP P17480 EXPRESSION TAG SEQADV 1K99 HIS A 95 UNP P17480 EXPRESSION TAG SEQADV 1K99 HIS A 96 UNP P17480 EXPRESSION TAG SEQADV 1K99 HIS A 97 UNP P17480 EXPRESSION TAG SEQADV 1K99 HIS A 98 UNP P17480 EXPRESSION TAG SEQADV 1K99 HIS A 99 UNP P17480 EXPRESSION TAG SEQRES 1 A 99 MET LYS LYS LEU LYS LYS HIS PRO ASP PHE PRO LYS LYS SEQRES 2 A 99 PRO LEU THR PRO TYR PHE ARG PHE PHE MET GLU LYS ARG SEQRES 3 A 99 ALA LYS TYR ALA LYS LEU HIS PRO GLU MET SER ASN LEU SEQRES 4 A 99 ASP LEU THR LYS ILE LEU SER LYS LYS TYR LYS GLU LEU SEQRES 5 A 99 PRO GLU LYS LYS LYS MET LYS TYR ILE GLN ASP PHE GLN SEQRES 6 A 99 ARG GLU LYS GLN GLU PHE GLU ARG ASN LEU ALA ARG PHE SEQRES 7 A 99 ARG GLU ASP HIS PRO ASP LEU ILE GLN ASN ALA LYS LYS SEQRES 8 A 99 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 16 LYS A 31 1 16 HELIX 2 2 ASN A 38 LEU A 52 1 15 HELIX 3 3 LYS A 56 ALA A 76 1 21 HELIX 4 4 ARG A 77 ASP A 81 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1