HEADER HYDROLASE 29-OCT-01 1K9D TITLE THE 1.7 A CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE, A FAMILY-67 TITLE 2 GLYCOSIDE HYDROLASE FROM BACILLUS STEAROTHERMOPHILUS T-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-D-GLUCURONIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.139; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: T1; SOURCE 5 GENE: AGUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9D KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GOLAN,D.SHALLOM,A.TEPLITSKY,G.ZAIDE,S.SHULAMI,T.BAASOV,V.STOJANOFF, AUTHOR 2 A.THOMPSON,Y.SHOHAM,G.SHOHAM REVDAT 7 03-APR-24 1K9D 1 REMARK REVDAT 6 07-FEB-24 1K9D 1 REMARK REVDAT 5 13-JUL-11 1K9D 1 VERSN REVDAT 4 24-FEB-09 1K9D 1 VERSN REVDAT 3 27-JAN-04 1K9D 1 JRNL REVDAT 2 28-OCT-03 1K9D 1 REMARK SOURCE JRNL AUTHOR REVDAT 1 29-OCT-02 1K9D 0 JRNL AUTH G.GOLAN,D.SHALLOM,A.TEPLITSKY,G.ZAIDE,S.SHULAMI,T.BAASOV, JRNL AUTH 2 V.STOJANOFF,A.THOMPSON,Y.SHOHAM,G.SHOHAM JRNL TITL CRYSTAL STRUCTURES OF GEOBACILLUS STEAROTHERMOPHILUS JRNL TITL 2 {ALPHA}-GLUCURONIDASE COMPLEXED WITH ITS SUBSTRATE AND JRNL TITL 3 PRODUCTS: MECHANISTIC IMPLICATIONS. JRNL REF J.BIOL.CHEM. V. 279 3014 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14573597 JRNL DOI 10.1074/JBC.M310098200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 274221.450 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 91195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9105 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9316 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1037 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5453 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -2.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.690 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.490 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 49.86 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : GOL.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : GOL.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1000014723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94808 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: INITIAL AND PARTIAL MODEL BASED ON 2.4A RESOLUTION REMARK 200 DATA (UNPUBLISHED) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-CITRATE PH 5.0, 14% PEG 4000, REMARK 280 12% ISO-PROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.98000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.78500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.49000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.78500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 247.47000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.49000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.78500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 247.47000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 164.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 329.96000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 4 REMARK 465 ASP A 283 REMARK 465 SER A 284 REMARK 465 GLU A 285 REMARK 465 PHE A 286 REMARK 465 ARG A 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 77 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 ASN A 323 CG OD1 ND2 REMARK 470 GLN A 325 CG CD OE1 NE2 REMARK 470 ARG A 679 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 133 C LEU A 134 N -0.147 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 -124.67 55.36 REMARK 500 LEU A 10 55.49 -100.31 REMARK 500 SER A 135 87.52 -152.94 REMARK 500 CYS A 324 27.21 -76.24 REMARK 500 GLN A 325 44.14 -145.48 REMARK 500 MET A 363 -97.29 -106.20 REMARK 500 ASP A 364 76.49 -162.31 REMARK 500 SER A 422 51.80 -112.26 REMARK 500 TRP A 452 -40.41 66.47 REMARK 500 THR A 513 -136.25 -110.23 REMARK 500 THR A 513 -135.48 -110.23 REMARK 500 TRP A 520 -131.54 58.51 REMARK 500 ASN A 531 83.93 -168.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 713 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K9E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MUTATED FAMILY-67 ALPHA-D-GLUCURONIDASE REMARK 900 (E285N) FROM BACILLUS STEAROTHERMOPHILUS T-6, COMPLEXED WITH 4-O- REMARK 900 METHYL-GLUCURONIC ACID REMARK 900 RELATED ID: 1K9F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MUTATED FAMILY-67 ALPHA-D-GLUCURONIDASE REMARK 900 (E285N) FROM BACILLUS STEAROTHERMOPHILUS T-6, COMPLEXED WITH REMARK 900 ALDOTETRAOURONIC ACID DBREF 1K9D A 1 679 UNP Q8VVD2 Q8VVD2_BACST 1 679 SEQRES 1 A 679 MET THR ALA GLY TYR GLU PRO CYS TRP LEU ARG TYR GLU SEQRES 2 A 679 ARG LYS ASP GLN TYR SER ARG LEU ARG PHE GLU GLU ILE SEQRES 3 A 679 VAL ALA LYS ARG THR SER PRO ILE PHE GLN ALA ALA VAL SEQRES 4 A 679 GLU GLU LEU GLN LYS GLY LEU ARG SER MET MET GLU ILE SEQRES 5 A 679 GLU PRO GLN VAL VAL GLN GLU VAL ASN GLU THR ALA ASN SEQRES 6 A 679 SER ILE TRP LEU GLY THR LEU GLU ASP GLU GLU PHE GLU SEQRES 7 A 679 ARG PRO LEU GLU GLY THR LEU VAL HIS PRO GLU GLY TYR SEQRES 8 A 679 VAL ILE ARG SER ASP VAL ASP ASP GLY PRO PHE ARG ILE SEQRES 9 A 679 TYR ILE ILE GLY LYS THR ASP ALA GLY VAL LEU TYR GLY SEQRES 10 A 679 VAL PHE HIS PHE LEU ARG LEU LEU GLN MET GLY GLU ASN SEQRES 11 A 679 ILE ALA GLN LEU SER ILE ILE GLU GLN PRO LYS ASN ARG SEQRES 12 A 679 LEU ARG MET ILE ASN HIS TRP ASP ASN MET ASP GLY SER SEQRES 13 A 679 ILE GLU ARG GLY TYR ALA GLY ARG SER ILE PHE PHE VAL SEQRES 14 A 679 ASP ASP GLN PHE VAL LYS GLN ASN GLN ARG ILE LYS ASP SEQRES 15 A 679 TYR ALA ARG LEU LEU ALA SER VAL GLY ILE ASN ALA ILE SEQRES 16 A 679 SER ILE ASN ASN VAL ASN VAL HIS LYS THR GLU THR LYS SEQRES 17 A 679 LEU ILE THR ASP HIS PHE LEU PRO ASP VAL ALA GLU VAL SEQRES 18 A 679 ALA ASP ILE PHE ARG THR TYR GLY ILE LYS THR PHE LEU SEQRES 19 A 679 SER ILE ASN TYR ALA SER PRO ILE GLU ILE GLY GLY LEU SEQRES 20 A 679 PRO THR ALA ASP PRO LEU ASP PRO GLU VAL ARG TRP TRP SEQRES 21 A 679 TRP LYS GLU THR ALA LYS ARG ILE TYR GLN TYR ILE PRO SEQRES 22 A 679 ASP PHE GLY GLY PHE VAL VAL LYS ALA ASP SER GLU PHE SEQRES 23 A 679 ARG PRO GLY PRO PHE THR TYR GLY ARG ASP HIS ALA GLU SEQRES 24 A 679 GLY ALA ASN MET LEU ALA GLU ALA LEU ALA PRO PHE GLY SEQRES 25 A 679 GLY LEU VAL ILE TRP ARG CYS PHE VAL TYR ASN CYS GLN SEQRES 26 A 679 GLN ASP TRP ARG ASP ARG THR THR ASP ARG ALA LYS ALA SEQRES 27 A 679 ALA TYR ASP HIS PHE LYS PRO LEU ASP GLY GLN PHE ARG SEQRES 28 A 679 GLU ASN VAL ILE LEU GLN ILE LYS ASN GLY PRO MET ASP SEQRES 29 A 679 PHE GLN VAL ARG GLU PRO VAL SER PRO LEU PHE GLY ALA SEQRES 30 A 679 MET PRO LYS THR ASN GLN MET MET GLU VAL GLN ILE THR SEQRES 31 A 679 GLN GLU TYR THR GLY GLN GLN LYS HIS LEU CYS PHE LEU SEQRES 32 A 679 ILE PRO GLN TRP LYS GLU VAL LEU ASP PHE ASP THR TYR SEQRES 33 A 679 ALA LYS GLY LYS GLY SER GLU VAL LYS LYS VAL ILE ASP SEQRES 34 A 679 GLY SER LEU PHE ASP TYR ARG TYR SER GLY ILE ALA GLY SEQRES 35 A 679 VAL SER ASN ILE GLY SER ASP PRO ASN TRP THR GLY HIS SEQRES 36 A 679 THR LEU ALA GLN ALA ASN LEU TYR GLY PHE GLY ARG LEU SEQRES 37 A 679 ALA TRP ASN PRO ASP LEU SER ALA GLU GLU ILE ALA ASN SEQRES 38 A 679 GLU TRP VAL VAL GLN THR PHE GLY ASP ASP SER GLN VAL SEQRES 39 A 679 VAL GLU THR ILE SER TRP MET LEU LEU SER SER TRP ARG SEQRES 40 A 679 ILE TYR GLU ASN TYR THR SER PRO LEU GLY VAL GLY TRP SEQRES 41 A 679 MET VAL ASN PRO GLY HIS HIS TYR GLY PRO ASN VAL ASP SEQRES 42 A 679 GLY TYR GLU TYR SER HIS TRP GLY THR TYR HIS TYR ALA SEQRES 43 A 679 ASP ARG ASP GLY ILE GLY VAL ASP ARG THR VAL ALA THR SEQRES 44 A 679 GLY THR GLY TYR THR ALA GLN TYR PHE PRO GLU ASN ALA SEQRES 45 A 679 ALA MET TYR GLU SER LEU ASP THR CYS PRO ASP GLU LEU SEQRES 46 A 679 LEU LEU PHE PHE HIS HIS VAL PRO TYR THR HIS ARG LEU SEQRES 47 A 679 HIS SER GLY GLU THR VAL ILE GLN HIS ILE TYR ASN THR SEQRES 48 A 679 HIS PHE GLU GLY VAL GLU GLN ALA LYS GLN LEU ARG LYS SEQRES 49 A 679 ARG TRP GLU GLN LEU LYS GLY LYS ILE ASP GLU LYS ARG SEQRES 50 A 679 TYR HIS ASP VAL LEU GLU ARG LEU THR ILE GLN VAL GLU SEQRES 51 A 679 HIS ALA LYS GLU TRP ARG ASP VAL ILE ASN THR TYR PHE SEQRES 52 A 679 TYR ARG LYS SER GLY ILE ASP ASP GLN TYR GLY ARG LYS SEQRES 53 A 679 ILE TYR ARG HET GOL A 701 6 HET GOL A 702 6 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HET GOL A 708 6 HET GOL A 709 6 HET GOL A 710 6 HET GOL A 711 6 HET GOL A 712 6 HET GOL A 713 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 13(C3 H8 O3) FORMUL 15 HOH *650(H2 O) HELIX 1 1 SER A 32 GLU A 51 1 20 HELIX 2 2 GLU A 73 GLU A 75 5 3 HELIX 3 3 ARG A 79 THR A 84 1 6 HELIX 4 4 THR A 110 MET A 127 1 18 HELIX 5 5 ASN A 177 VAL A 190 1 14 HELIX 6 6 THR A 205 THR A 211 5 7 HELIX 7 7 PHE A 214 TYR A 228 1 15 HELIX 8 8 ALA A 239 ILE A 244 1 6 HELIX 9 9 ASP A 254 ILE A 272 1 19 HELIX 10 10 GLY A 289 GLY A 294 5 6 HELIX 11 11 ASP A 296 ALA A 309 1 14 HELIX 12 12 PRO A 310 GLY A 312 5 3 HELIX 13 13 ASP A 334 ALA A 336 5 3 HELIX 14 14 LYS A 337 LYS A 344 1 8 HELIX 15 15 PRO A 345 ASP A 347 5 3 HELIX 16 16 LEU A 403 ASP A 412 1 10 HELIX 17 17 GLU A 423 ASP A 429 1 7 HELIX 18 18 HIS A 455 LEU A 457 5 3 HELIX 19 19 ALA A 458 ASN A 471 1 14 HELIX 20 20 SER A 475 GLY A 489 1 15 HELIX 21 21 ASP A 491 TYR A 512 1 22 HELIX 22 22 GLY A 562 TYR A 567 5 6 HELIX 23 23 PHE A 568 SER A 577 1 10 HELIX 24 24 PRO A 582 GLU A 584 5 3 HELIX 25 25 LEU A 585 HIS A 590 1 6 HELIX 26 26 THR A 603 GLN A 628 1 26 HELIX 27 27 ASP A 634 GLY A 668 1 35 SHEET 1 A 6 GLN A 55 VAL A 57 0 SHEET 2 A 6 GLU A 25 ALA A 28 1 N ILE A 26 O VAL A 57 SHEET 3 A 6 SER A 66 THR A 71 1 O LEU A 69 N VAL A 27 SHEET 4 A 6 ARG A 103 GLY A 108 1 O ILE A 104 N TRP A 68 SHEET 5 A 6 TYR A 91 SER A 95 -1 N VAL A 92 O ILE A 107 SHEET 6 A 6 SER A 135 GLU A 138 -1 O ILE A 136 N ILE A 93 SHEET 1 B 9 LEU A 144 ASN A 148 0 SHEET 2 B 9 ALA A 194 SER A 196 1 O SER A 196 N ILE A 147 SHEET 3 B 9 LYS A 231 ILE A 236 1 O PHE A 233 N ILE A 195 SHEET 4 B 9 GLY A 277 VAL A 280 1 O VAL A 279 N ILE A 236 SHEET 5 B 9 LEU A 314 ARG A 318 1 O ILE A 316 N PHE A 278 SHEET 6 B 9 VAL A 354 LYS A 359 1 O ILE A 355 N VAL A 315 SHEET 7 B 9 GLN A 383 GLN A 388 1 O GLU A 386 N ILE A 358 SHEET 8 B 9 GLY A 439 VAL A 443 1 O ALA A 441 N MET A 385 SHEET 9 B 9 LEU A 144 ASN A 148 1 N ASN A 148 O GLY A 442 SHEET 1 C 2 PHE A 168 VAL A 169 0 SHEET 2 C 2 GLN A 172 PHE A 173 -1 O GLN A 172 N VAL A 169 SHEET 1 D 2 GLY A 550 ILE A 551 0 SHEET 2 D 2 VAL A 592 PRO A 593 -1 O VAL A 592 N ILE A 551 SITE 1 AC1 11 TYR A 91 TYR A 116 HIS A 120 ARG A 123 SITE 2 AC1 11 SER A 189 VAL A 190 GLY A 191 ARG A 467 SITE 3 AC1 11 TRP A 470 HOH A 855 HOH A 923 SITE 1 AC2 9 ARG A 368 GLU A 369 VAL A 371 GLU A 409 SITE 2 AC2 9 LEU A 585 HOH A 829 HOH A 905 HOH A 985 SITE 3 AC2 9 HOH A1103 SITE 1 AC3 10 PHE A 320 TYR A 322 ARG A 335 ASP A 364 SITE 2 AC3 10 TRP A 520 HIS A 527 TYR A 535 TRP A 540 SITE 3 AC3 10 HOH A 974 HOH A1324 SITE 1 AC4 10 TYR A 340 LYS A 344 ALA A 377 ALA A 565 SITE 2 AC4 10 GLN A 566 TYR A 567 PHE A 568 GOL A 710 SITE 3 AC4 10 HOH A 949 HOH A1157 SITE 1 AC5 4 SER A 19 LEU A 125 GLU A 129 HOH A 963 SITE 1 AC6 5 ASP A 554 HIS A 590 HIS A 591 VAL A 592 SITE 2 AC6 5 HOH A 935 SITE 1 AC7 8 ILE A 166 VAL A 174 GLN A 176 ARG A 179 SITE 2 AC7 8 HOH A1209 HOH A1318 HOH A1404 HOH A1450 SITE 1 AC8 5 ARG A 11 GLU A 13 PHE A 488 GLY A 489 SITE 2 AC8 5 HOH A 884 SITE 1 AC9 7 TRP A 68 GLU A 75 GLU A 76 PHE A 77 SITE 2 AC9 7 ARG A 94 TYR A 105 HOH A1155 SITE 1 BC1 4 TYR A 340 ALA A 565 GOL A 704 HOH A1131 SITE 1 BC2 5 GLU A 40 LYS A 181 THR A 227 TYR A 228 SITE 2 BC2 5 HOH A1181 SITE 1 BC3 8 ASP A 547 ARG A 548 ASP A 549 TYR A 664 SITE 2 BC3 8 ARG A 665 HOH A1129 HOH A1263 HOH A1264 SITE 1 BC4 6 LEU A 503 ARG A 507 HOH A 945 HOH A 997 SITE 2 BC4 6 HOH A1051 HOH A1274 CRYST1 73.570 73.570 329.960 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013592 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003031 0.00000