data_1K9Q # _entry.id 1K9Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1K9Q pdb_00001k9q 10.2210/pdb1k9q/pdb RCSB RCSB014736 ? ? WWPDB D_1000014736 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1JMQ '1JMQ contains YAP65 (L30K mutant) WW domain in Complexed with GTPPPPYTVG peptide' unspecified PDB 1E0M '1E0M contains Prototype Ww Domain' unspecified PDB 1EG3 '1EG3 contains Dystrophin Ww Domain Fragment' unspecified PDB 1EG4 '1EG4 contains Dystrophin Ww Domain Fragment In Complexed With beta-Dystroglycan Peptide' unspecified PDB 1I5H '1I5H contains Rnedd4 Wwiii Domain-Renac Bp2 Peptide Complex' unspecified PDB 1K9R '1K9R contains YAP65 WW domain complexed with Acetyl-PLPPY' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1K9Q _pdbx_database_status.recvd_initial_deposition_date 2001-10-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pires, J.R.' 1 'Taha-Nejad, F.' 2 'Toepert, F.' 3 'Ast, T.' 4 'Hoffmuller, U.' 5 'Schneider-Mergener, J.' 6 'Kuhne, R.' 7 'Macias, M.J.' 8 'Oschkinat, H.' 9 # _citation.id primary _citation.title ;Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 314 _citation.page_first 1147 _citation.page_last 1156 _citation.year 2001 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11743730 _citation.pdbx_database_id_DOI 10.1006/jmbi.2000.5199 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pires, J.R.' 1 ? primary 'Taha-Nejad, F.' 2 ? primary 'Toepert, F.' 3 ? primary 'Ast, T.' 4 ? primary 'Hoffmuller, U.' 5 ? primary 'Schneider-Mergener, J.' 6 ? primary 'Kuhne, R.' 7 ? primary 'Macias, M.J.' 8 ? primary 'Oschkinat, H.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '65 kDa Yes-associated protein' 4682.166 1 ? ? 'Wild type WW domain' ? 2 polymer syn 'WW domain binding protein-1' 527.593 1 ? P3G 'residues 149-153' ? 3 non-polymer syn N-OCTANE 114.229 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 YAP65 2 WBP-1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK A ? 2 'polypeptide(L)' no yes 'GPPPY(NH2)' GPPPYX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 GLU n 1 3 ILE n 1 4 PRO n 1 5 ASP n 1 6 ASP n 1 7 VAL n 1 8 PRO n 1 9 LEU n 1 10 PRO n 1 11 ALA n 1 12 GLY n 1 13 TRP n 1 14 GLU n 1 15 MET n 1 16 ALA n 1 17 LYS n 1 18 THR n 1 19 SER n 1 20 SER n 1 21 GLY n 1 22 GLN n 1 23 ARG n 1 24 TYR n 1 25 PHE n 1 26 LEU n 1 27 ASN n 1 28 HIS n 1 29 ILE n 1 30 ASP n 1 31 GLN n 1 32 THR n 1 33 THR n 1 34 THR n 1 35 TRP n 1 36 GLN n 1 37 ASP n 1 38 PRO n 1 39 ARG n 1 40 LYS n 2 1 GLY n 2 2 PRO n 2 3 PRO n 2 4 PRO n 2 5 TYR n 2 6 NH2 n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence was synthetically obtained, by semiautomated spot synthesis in a cellulose support.' 2 1 sample ? ? 'Homo sapiens' ? 9606 'This sequence was synthetically obtained by spot synthesis in a cellulose support.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP YAP1_HUMAN 1 FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK 165 P46937 ? 2 GB AAD10950 2 PPPPY 149 4205084 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1K9Q A 1 ? 40 ? P46937 165 ? 204 ? 5 44 2 2 1K9Q B 1 ? 5 ? 4205084 149 ? 153 ? 3 7 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 1K9Q GLY B 1 ? GB 4205084 PRO 149 'engineered mutation' 3 1 2 1K9Q NH2 B 6 ? GB 4205084 ? ? amidation 8 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 OCT non-polymer . N-OCTANE ? 'C8 H18' 114.229 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 2 2 '2D NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 288 1 6 '100mM NaCl' atm K 2 288 1 6 '100mM NaCl' atm K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 'phosphate buffer 10mM, NaCl 100mM, DTT 0.1mM, EDTA 0.1mM, pH 6, WW domain 1.2mM, ligand 2.4mM' 'H2O (10% D2O)' 2 'phosphate buffer 10mM, NaCl 100mM, DTT 0.1mM, EDTA 0.1mM, pH 6, WW domain 1.2mM, ligand 2.4mM' D2O # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 600 2 ? Bruker DMX 750 # _pdbx_nmr_refine.entry_id 1K9Q _pdbx_nmr_refine.method 'Simulated anneling' _pdbx_nmr_refine.details '2000K, 200 runs, Force constants for NOE 50kcal mol-1 rad-2, 422 restraints' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1K9Q _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1K9Q _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 processing Bruker 1 ANSIG 3.3 'data analysis' 'Kraulis, P.J.' 2 X-PLOR 3.1 refinement 'Brunger, A.T.' 3 # _exptl.entry_id 1K9Q _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1K9Q _struct.title 'YAP65 WW domain complexed to N-(n-octyl)-GPPPY-NH2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1K9Q _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'WW domain, YAP65, beta-sheet proteins, ligands, proline-rich peptides, STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? C OCT . C1 ? ? ? 1_555 B GLY 1 N ? ? B OCT 2 B GLY 3 1_555 ? ? ? ? ? ? ? 1.490 ? ? covale2 covale both ? B TYR 5 C ? ? ? 1_555 B NH2 6 N ? ? B TYR 7 B NH2 8 1_555 ? ? ? ? ? ? ? 1.304 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 13 ? LYS A 17 ? TRP A 17 LYS A 21 A 2 ARG A 23 ? ASN A 27 ? ARG A 27 ASN A 31 A 3 THR A 32 ? THR A 34 ? THR A 36 THR A 38 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 16 ? N ALA A 20 O TYR A 24 ? O TYR A 28 A 2 3 N PHE A 25 ? N PHE A 29 O THR A 34 ? O THR A 38 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id OCT _struct_site.pdbx_auth_seq_id 2 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE OCT B 2' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id GLY _struct_site_gen.label_asym_id B _struct_site_gen.label_seq_id 1 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id GLY _struct_site_gen.auth_asym_id B _struct_site_gen.auth_seq_id 3 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 1K9Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1K9Q _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 5 5 PHE PHE A . n A 1 2 GLU 2 6 6 GLU GLU A . n A 1 3 ILE 3 7 7 ILE ILE A . n A 1 4 PRO 4 8 8 PRO PRO A . n A 1 5 ASP 5 9 9 ASP ASP A . n A 1 6 ASP 6 10 10 ASP ASP A . n A 1 7 VAL 7 11 11 VAL VAL A . n A 1 8 PRO 8 12 12 PRO PRO A . n A 1 9 LEU 9 13 13 LEU LEU A . n A 1 10 PRO 10 14 14 PRO PRO A . n A 1 11 ALA 11 15 15 ALA ALA A . n A 1 12 GLY 12 16 16 GLY GLY A . n A 1 13 TRP 13 17 17 TRP TRP A . n A 1 14 GLU 14 18 18 GLU GLU A . n A 1 15 MET 15 19 19 MET MET A . n A 1 16 ALA 16 20 20 ALA ALA A . n A 1 17 LYS 17 21 21 LYS LYS A . n A 1 18 THR 18 22 22 THR THR A . n A 1 19 SER 19 23 23 SER SER A . n A 1 20 SER 20 24 24 SER SER A . n A 1 21 GLY 21 25 25 GLY GLY A . n A 1 22 GLN 22 26 26 GLN GLN A . n A 1 23 ARG 23 27 27 ARG ARG A . n A 1 24 TYR 24 28 28 TYR TYR A . n A 1 25 PHE 25 29 29 PHE PHE A . n A 1 26 LEU 26 30 30 LEU LEU A . n A 1 27 ASN 27 31 31 ASN ASN A . n A 1 28 HIS 28 32 32 HIS HIS A . n A 1 29 ILE 29 33 33 ILE ILE A . n A 1 30 ASP 30 34 34 ASP ASP A . n A 1 31 GLN 31 35 35 GLN GLN A . n A 1 32 THR 32 36 36 THR THR A . n A 1 33 THR 33 37 37 THR THR A . n A 1 34 THR 34 38 38 THR THR A . n A 1 35 TRP 35 39 39 TRP TRP A . n A 1 36 GLN 36 40 40 GLN GLN A . n A 1 37 ASP 37 41 41 ASP ASP A . n A 1 38 PRO 38 42 42 PRO PRO A . n A 1 39 ARG 39 43 43 ARG ARG A . n A 1 40 LYS 40 44 44 LYS LYS A . n B 2 1 GLY 1 3 3 GLY GLY B . n B 2 2 PRO 2 4 4 PRO PRO B . n B 2 3 PRO 3 5 5 PRO PRO B . n B 2 4 PRO 4 6 6 PRO PRO B . n B 2 5 TYR 5 7 7 TYR TYR B . n B 2 6 NH2 6 8 8 NH2 NH2 B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id OCT _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2 _pdbx_nonpoly_scheme.auth_seq_num 2 _pdbx_nonpoly_scheme.pdb_mon_id OCT _pdbx_nonpoly_scheme.auth_mon_id OCT _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-12-28 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-12-12 5 'Structure model' 1 4 2013-03-13 6 'Structure model' 1 5 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Other 4 5 'Structure model' Other 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' database_2 2 6 'Structure model' pdbx_nmr_software 3 6 'Structure model' pdbx_struct_assembly 4 6 'Structure model' pdbx_struct_oper_list 5 6 'Structure model' struct_conn 6 6 'Structure model' struct_ref_seq_dif 7 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_pdbx_nmr_software.name' 4 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 6 'Structure model' '_struct_ref_seq_dif.details' 6 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 11 OG A SER 23 ? ? HE21 A GLN 26 ? ? 1.57 2 11 H A ASN 31 ? ? O A THR 36 ? ? 1.58 3 12 H A ASN 31 ? ? O A THR 36 ? ? 1.59 4 16 O A PRO 42 ? ? HH11 A ARG 43 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 7 ? ? -167.65 71.34 2 1 PRO A 12 ? ? -71.88 -159.13 3 1 ALA A 20 ? ? -172.73 149.16 4 1 SER A 23 ? ? -176.11 -154.70 5 1 SER A 24 ? ? -66.68 74.58 6 1 ARG A 27 ? ? -63.97 74.27 7 1 GLN A 35 ? ? 54.94 72.02 8 1 TRP A 39 ? ? -63.70 -160.83 9 1 ASP A 41 ? ? -177.54 -59.90 10 2 GLU A 6 ? ? 54.35 99.21 11 2 LEU A 13 ? ? 54.64 176.96 12 2 SER A 23 ? ? 178.56 -85.68 13 2 SER A 24 ? ? -128.30 -80.52 14 2 ARG A 27 ? ? -64.93 72.41 15 2 GLN A 35 ? ? 53.93 75.30 16 2 TRP A 39 ? ? -109.36 -66.99 17 3 GLU A 6 ? ? -79.19 -72.89 18 3 PRO A 12 ? ? -73.62 -159.59 19 3 SER A 23 ? ? -176.82 59.98 20 3 SER A 24 ? ? 48.09 90.01 21 3 ARG A 27 ? ? -65.16 73.57 22 3 TRP A 39 ? ? -63.54 -149.63 23 3 ASP A 41 ? ? -175.99 -60.13 24 4 ILE A 7 ? ? -52.84 108.45 25 4 ASP A 9 ? ? -113.84 77.63 26 4 ASP A 10 ? ? -174.39 -60.99 27 4 PRO A 12 ? ? -71.62 -87.89 28 4 ALA A 20 ? ? -170.21 145.63 29 4 SER A 23 ? ? -176.43 -151.70 30 4 SER A 24 ? ? -66.55 74.77 31 4 ARG A 27 ? ? -63.98 74.10 32 4 TRP A 39 ? ? -100.38 -64.95 33 4 ARG A 43 ? ? -101.52 78.78 34 5 ASP A 9 ? ? -91.06 41.64 35 5 ASP A 10 ? ? -173.40 83.65 36 5 LEU A 13 ? ? 53.56 -179.30 37 5 ALA A 20 ? ? -171.19 145.66 38 5 SER A 23 ? ? -178.08 -153.65 39 5 ARG A 27 ? ? -65.67 75.41 40 5 GLN A 35 ? ? 54.06 71.07 41 5 TRP A 39 ? ? -106.62 -61.33 42 6 GLU A 6 ? ? -53.67 172.16 43 6 ASP A 10 ? ? -67.39 74.62 44 6 VAL A 11 ? ? 54.16 99.06 45 6 PRO A 12 ? ? -71.69 -158.38 46 6 LEU A 13 ? ? -51.44 177.02 47 6 SER A 23 ? ? -177.89 -153.07 48 6 SER A 24 ? ? -53.73 -70.17 49 6 ARG A 27 ? ? -65.72 69.08 50 6 GLN A 35 ? ? 51.98 78.66 51 6 TRP A 39 ? ? -102.34 -67.14 52 6 GLN A 40 ? ? -58.07 103.07 53 6 ARG A 43 ? ? -81.73 -74.79 54 7 GLU A 6 ? ? -73.33 -159.73 55 7 PRO A 8 ? ? -72.99 -163.51 56 7 VAL A 11 ? ? -175.06 106.89 57 7 PRO A 12 ? ? -71.10 -159.07 58 7 ALA A 20 ? ? -170.82 142.31 59 7 SER A 23 ? ? -178.58 -155.37 60 7 GLN A 35 ? ? 35.75 65.84 61 7 ASP A 41 ? ? -51.87 107.98 62 7 ARG A 43 ? ? -167.94 29.52 63 8 GLU A 6 ? ? -68.24 -161.28 64 8 ILE A 7 ? ? -117.02 68.48 65 8 ASP A 10 ? ? -127.92 -80.49 66 8 PRO A 12 ? ? -72.00 -159.27 67 8 SER A 23 ? ? -179.89 95.69 68 8 SER A 24 ? ? 61.37 -78.28 69 8 GLN A 26 ? ? -58.92 89.86 70 8 GLN A 35 ? ? 55.36 74.75 71 8 GLN A 40 ? ? 50.17 -176.28 72 8 ARG A 43 ? ? -119.15 -78.93 73 9 ILE A 7 ? ? -115.37 72.03 74 9 PRO A 12 ? ? -72.00 -159.46 75 9 SER A 23 ? ? 178.71 -152.66 76 9 SER A 24 ? ? -52.59 -80.69 77 9 GLN A 26 ? ? -69.02 71.23 78 9 ASP A 41 ? ? -176.80 -60.03 79 10 ASP A 9 ? ? -103.23 70.47 80 10 PRO A 12 ? ? -72.99 -85.91 81 10 ALA A 20 ? ? -172.11 146.34 82 10 SER A 23 ? ? -175.58 -154.32 83 10 SER A 24 ? ? -66.65 74.37 84 10 ARG A 27 ? ? -63.91 75.92 85 10 GLN A 35 ? ? 50.36 77.43 86 10 ARG A 43 ? ? -175.02 33.16 87 11 GLU A 6 ? ? -98.08 -68.13 88 11 PRO A 8 ? ? -75.89 -163.23 89 11 ASP A 10 ? ? -73.52 -80.29 90 11 ALA A 20 ? ? -171.28 148.03 91 11 SER A 23 ? ? -157.87 -154.39 92 11 GLN A 35 ? ? 55.49 72.71 93 11 TRP A 39 ? ? -106.84 -64.20 94 12 ASP A 9 ? ? -118.59 52.94 95 12 ASP A 10 ? ? -158.40 -71.73 96 12 ALA A 20 ? ? -171.02 144.82 97 12 SER A 23 ? ? -175.76 58.00 98 12 SER A 24 ? ? 50.13 96.24 99 12 ARG A 27 ? ? -63.45 74.46 100 12 ASP A 41 ? ? 56.22 94.30 101 12 ARG A 43 ? ? 53.24 96.63 102 13 PRO A 8 ? ? -72.46 -166.35 103 13 PRO A 12 ? ? -71.44 -159.48 104 13 LEU A 13 ? ? -51.42 177.51 105 13 SER A 23 ? ? 52.15 95.41 106 13 SER A 24 ? ? 63.35 -77.28 107 13 GLN A 26 ? ? 51.08 74.51 108 13 GLN A 35 ? ? 55.30 70.72 109 13 GLN A 40 ? ? 52.35 -160.48 110 14 GLU A 6 ? ? -174.88 124.84 111 14 PRO A 12 ? ? -71.23 -159.05 112 14 SER A 23 ? ? -177.12 -152.52 113 14 ARG A 27 ? ? -65.86 70.04 114 14 TRP A 39 ? ? -77.99 -149.05 115 14 ASP A 41 ? ? -176.51 -60.06 116 14 ARG A 43 ? ? -151.57 -78.82 117 15 GLU A 6 ? ? -173.79 -156.01 118 15 ASP A 10 ? ? -175.30 -64.72 119 15 PRO A 12 ? ? -71.37 -87.93 120 15 SER A 23 ? ? -163.56 -147.81 121 15 GLN A 26 ? ? -60.69 89.05 122 15 GLN A 35 ? ? 55.11 75.53 123 15 ASP A 41 ? ? 62.63 132.63 124 16 GLU A 6 ? ? -87.41 49.62 125 16 ASP A 10 ? ? -151.07 53.17 126 16 LEU A 13 ? ? 54.05 -177.08 127 16 SER A 23 ? ? 53.82 -139.82 128 16 SER A 24 ? ? -68.29 70.59 129 16 GLN A 26 ? ? -55.92 92.94 130 16 ARG A 27 ? ? -66.72 89.92 131 16 GLN A 40 ? ? -52.35 101.55 132 16 ARG A 43 ? ? -176.87 -75.62 133 17 GLU A 6 ? ? 53.89 -159.14 134 17 PRO A 12 ? ? -73.52 -89.94 135 17 LEU A 13 ? ? -171.42 -165.19 136 17 ALA A 20 ? ? -171.30 144.66 137 17 SER A 23 ? ? -176.27 -157.72 138 17 SER A 24 ? ? -66.87 73.92 139 17 ARG A 27 ? ? -67.20 80.54 140 17 ASP A 34 ? ? -141.48 17.65 141 17 GLN A 35 ? ? 49.43 81.86 142 17 GLN A 40 ? ? -57.97 -165.65 143 18 PRO A 8 ? ? -72.55 -163.39 144 18 ASP A 9 ? ? -105.97 61.12 145 18 ASP A 10 ? ? -153.11 21.75 146 18 PRO A 12 ? ? -72.19 -159.65 147 18 SER A 23 ? ? 55.10 -142.74 148 18 SER A 24 ? ? -50.22 -81.04 149 18 GLN A 26 ? ? -52.68 94.64 150 18 GLN A 35 ? ? 57.38 81.14 151 18 ASP A 41 ? ? -179.77 -59.35 152 18 ARG A 43 ? ? -175.26 67.76 153 19 ASP A 9 ? ? -61.95 84.57 154 19 ASP A 10 ? ? -177.09 -34.13 155 19 LEU A 13 ? ? 57.28 173.20 156 19 SER A 23 ? ? -178.49 -91.61 157 19 GLN A 35 ? ? 54.96 76.68 158 19 TRP A 39 ? ? -103.70 -60.23 159 19 ARG A 43 ? ? -174.83 -56.45 160 20 PRO A 8 ? ? -72.83 -163.14 161 20 ASP A 9 ? ? -156.65 23.38 162 20 LEU A 13 ? ? 58.61 -175.32 163 20 SER A 23 ? ? -177.70 103.34 164 20 GLN A 26 ? ? -59.00 90.12 165 20 ARG A 27 ? ? -63.48 85.23 166 20 GLN A 35 ? ? 55.01 72.75 167 20 GLN A 40 ? ? -51.24 94.50 168 20 ARG A 43 ? ? -151.49 19.82 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name N-OCTANE _pdbx_entity_nonpoly.comp_id OCT #