HEADER VIRAL PROTEIN/RECEPTOR 05-MAY-99 1KAC TITLE KNOB DOMAIN FROM ADENOVIRUS SEROTYPE 12 IN COMPLEX WITH DOMAIN 1 OF TITLE 2 ITS CELLULAR RECEPTOR CAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (FIBER KNOB PROTEIN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KNOB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR); COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: DOMAIN 1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 12; SOURCE 3 ORGANISM_TAXID: 28282; SOURCE 4 VARIANT: SEROTYPE 12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: T7; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS ADHESION PROTEIN RECEPTOR COMPLEX, VIRAL PROTEIN-RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.C.BEWLEY,K.SPRINGER,Y.B.ZHANG,P.FREIMUTH,J.M.FLANAGAN REVDAT 4 20-NOV-24 1KAC 1 REMARK REVDAT 3 27-DEC-23 1KAC 1 SEQADV REVDAT 2 24-FEB-09 1KAC 1 VERSN REVDAT 1 24-NOV-99 1KAC 0 JRNL AUTH M.C.BEWLEY,K.SPRINGER,Y.B.ZHANG,P.FREIMUTH,J.M.FLANAGAN JRNL TITL STRUCTURAL ANALYSIS OF THE MECHANISM OF ADENOVIRUS BINDING JRNL TITL 2 TO ITS HUMAN CELLULAR RECEPTOR, CAR. JRNL REF SCIENCE V. 286 1579 1999 JRNL REFN ISSN 0036-8075 JRNL PMID 10567268 JRNL DOI 10.1126/SCIENCE.286.5444.1579 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 5.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 24601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.43 REMARK 3 BSOL : 61.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000001003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 99.0 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24636 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.70000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: AMORE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 900MM AMMONIUM SULPHATE ON 100MM MES, REMARK 280 PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 83.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.92500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 83.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.92500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 83.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 83.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 83.92500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 83.92500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 83.92500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 83.92500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 83.92500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 83.92500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 83.92500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 83.92500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 83.92500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 83.92500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 83.92500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 83.92500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 41.96250 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 125.88750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 125.88750 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 41.96250 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 41.96250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 41.96250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 125.88750 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 125.88750 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 41.96250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 125.88750 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 41.96250 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 125.88750 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 41.96250 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 125.88750 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 125.88750 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 125.88750 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 41.96250 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 125.88750 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 41.96250 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 41.96250 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 41.96250 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 125.88750 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 125.88750 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 41.96250 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 41.96250 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 125.88750 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 125.88750 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 125.88750 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 125.88750 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 41.96250 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 125.88750 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 41.96250 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 125.88750 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 41.96250 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 41.96250 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 41.96250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 251.77500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 167.85000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 83.92500 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 167.85000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -83.92500 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 251.77500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 150 O HOH B 175 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 83 CG ASP B 83 OD1 2.095 REMARK 500 ASP B 83 CG ASP B 83 OD2 1.659 REMARK 500 ASP B 84 CG ASP B 84 OD1 1.751 REMARK 500 ASP B 84 CG ASP B 84 OD2 1.233 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 83 OD1 - CG - OD2 ANGL. DEV. = -82.2 DEGREES REMARK 500 ASP B 83 CB - CG - OD1 ANGL. DEV. = -76.3 DEGREES REMARK 500 ASP B 83 CB - CG - OD2 ANGL. DEV. = -60.9 DEGREES REMARK 500 ASP B 84 OD1 - CG - OD2 ANGL. DEV. = -76.4 DEGREES REMARK 500 ASP B 84 CB - CG - OD1 ANGL. DEV. = -66.1 DEGREES REMARK 500 ASP B 84 CB - CG - OD2 ANGL. DEV. = -48.5 DEGREES REMARK 500 GLY B 145 N - CA - C ANGL. DEV. = -22.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 413 155.52 86.22 REMARK 500 LEU A 426 58.95 32.02 REMARK 500 THR A 480 134.48 -36.36 REMARK 500 TRP A 490 117.25 -166.94 REMARK 500 SER A 497 -161.61 -120.33 REMARK 500 GLN A 535 -11.57 67.28 REMARK 500 THR A 538 -1.95 -59.33 REMARK 500 LYS A 540 66.71 -117.84 REMARK 500 SER A 553 -103.56 -118.23 REMARK 500 LEU A 554 124.52 -170.93 REMARK 500 SER A 567 -53.46 -27.95 REMARK 500 ASN A 571 33.90 38.46 REMARK 500 CYS B 43 80.85 -155.89 REMARK 500 ASP B 51 72.39 -64.72 REMARK 500 ASP B 70 55.52 37.44 REMARK 500 ASP B 83 -165.31 -127.10 REMARK 500 ASP B 99 81.41 -151.94 REMARK 500 SER B 106 151.48 -49.61 REMARK 500 LYS B 126 83.37 -151.13 REMARK 500 ALA B 127 132.74 -37.55 REMARK 500 PRO B 143 152.89 -40.67 REMARK 500 SER B 144 122.36 123.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP B 83 0.39 SIDE CHAIN REMARK 500 ASP B 84 0.44 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NOB RELATED DB: PDB DBREF 1KAC A 403 587 UNP P36711 FIBP_ADE12 403 587 DBREF 1KAC B 23 146 UNP P78310 CXAR_HUMAN 21 144 SEQADV 1KAC GLY B 23 UNP P78310 SER 21 CONFLICT SEQRES 1 A 185 THR PRO TYR ASP PRO LEU THR LEU TRP THR THR PRO ASP SEQRES 2 A 185 PRO PRO PRO ASN CYS SER LEU ILE GLN GLU LEU ASP ALA SEQRES 3 A 185 LYS LEU THR LEU CYS LEU THR LYS ASN GLY SER ILE VAL SEQRES 4 A 185 ASN GLY ILE VAL SER LEU VAL GLY VAL LYS GLY ASN LEU SEQRES 5 A 185 LEU ASN ILE GLN SER THR THR THR THR VAL GLY VAL HIS SEQRES 6 A 185 LEU VAL PHE ASP GLU GLN GLY ARG LEU ILE THR SER THR SEQRES 7 A 185 PRO THR ALA LEU VAL PRO GLN ALA SER TRP GLY TYR ARG SEQRES 8 A 185 GLN GLY GLN SER VAL SER THR ASN THR VAL THR ASN GLY SEQRES 9 A 185 LEU GLY PHE MET PRO ASN VAL SER ALA TYR PRO ARG PRO SEQRES 10 A 185 ASN ALA SER GLU ALA LYS SER GLN MET VAL SER LEU THR SEQRES 11 A 185 TYR LEU GLN GLY ASP THR SER LYS PRO ILE THR MET LYS SEQRES 12 A 185 VAL ALA PHE ASN GLY ILE THR SER LEU ASN GLY TYR SER SEQRES 13 A 185 LEU THR PHE MET TRP SER GLY LEU SER ASN TYR ILE ASN SEQRES 14 A 185 GLN PRO PHE SER THR PRO SER CYS SER PHE SER TYR ILE SEQRES 15 A 185 THR GLN GLU SEQRES 1 B 124 GLY ILE THR THR PRO GLU GLU MET ILE GLU LYS ALA LYS SEQRES 2 B 124 GLY GLU THR ALA TYR LEU PRO CYS LYS PHE THR LEU SER SEQRES 3 B 124 PRO GLU ASP GLN GLY PRO LEU ASP ILE GLU TRP LEU ILE SEQRES 4 B 124 SER PRO ALA ASP ASN GLN LYS VAL ASP GLN VAL ILE ILE SEQRES 5 B 124 LEU TYR SER GLY ASP LYS ILE TYR ASP ASP TYR TYR PRO SEQRES 6 B 124 ASP LEU LYS GLY ARG VAL HIS PHE THR SER ASN ASP LEU SEQRES 7 B 124 LYS SER GLY ASP ALA SER ILE ASN VAL THR ASN LEU GLN SEQRES 8 B 124 LEU SER ASP ILE GLY THR TYR GLN CYS LYS VAL LYS LYS SEQRES 9 B 124 ALA PRO GLY VAL ALA ASN LYS LYS ILE HIS LEU VAL VAL SEQRES 10 B 124 LEU VAL LYS PRO SER GLY ALA FORMUL 3 HOH *70(H2 O) HELIX 1 1 GLY A 452 LEU A 455 5 4 HELIX 2 2 GLY A 506 GLY A 508 5 3 HELIX 3 3 ARG A 518 ASN A 520 5 3 HELIX 4 4 ALA A 524 SER A 526 5 3 HELIX 5 5 LEU A 534 GLY A 536 5 3 HELIX 6 6 LEU A 566 ASN A 568 5 3 HELIX 7 7 PRO B 87 LEU B 89 5 3 HELIX 8 8 LEU B 100 SER B 102 5 3 HELIX 9 9 LEU B 114 ASP B 116 5 3 SHEET 1 A 5 CYS A 579 ILE A 584 0 SHEET 2 A 5 ILE A 440 GLY A 449 -1 N VAL A 445 O CYS A 579 SHEET 3 A 5 ALA A 428 ASN A 437 -1 N ASN A 437 O ILE A 440 SHEET 4 A 5 ASP A 406 TRP A 411 -1 N LEU A 410 O LEU A 434 SHEET 5 A 5 GLY A 491 ARG A 493 -1 N ARG A 493 O ASP A 406 SHEET 1 B 4 THR A 463 PHE A 470 0 SHEET 2 B 4 TYR A 557 SER A 564 -1 N TRP A 563 O VAL A 464 SHEET 3 B 4 PRO A 541 PHE A 548 -1 N ALA A 547 O THR A 560 SHEET 4 B 4 GLN A 527 TYR A 533 -1 N THR A 532 O ILE A 542 SHEET 1 C 6 GLU B 29 ALA B 34 0 SHEET 2 C 6 GLY B 129 LEU B 140 1 N HIS B 136 O GLU B 29 SHEET 3 C 6 GLY B 118 LYS B 126 -1 N LYS B 126 O GLY B 129 SHEET 4 C 6 LEU B 55 PRO B 63 -1 N SER B 62 O THR B 119 SHEET 5 C 6 GLN B 71 SER B 77 -1 N TYR B 76 O ILE B 57 SHEET 6 C 6 LYS B 80 TYR B 82 -1 N TYR B 82 O LEU B 75 SHEET 1 D 3 ALA B 39 LEU B 41 0 SHEET 2 D 3 ILE B 107 VAL B 109 -1 N VAL B 109 O ALA B 39 SHEET 3 D 3 VAL B 93 PHE B 95 -1 N HIS B 94 O ASN B 108 SSBOND 1 CYS B 43 CYS B 122 1555 1555 2.03 CISPEP 1 THR A 480 PRO A 481 0 -0.32 CISPEP 2 ALA B 127 PRO B 128 0 0.29 CRYST1 167.850 167.850 167.850 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005958 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005958 0.00000