HEADER OXIDOREDUCTASE 05-NOV-01 1KB0 TITLE CRYSTAL STRUCTURE OF QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE FROM TITLE 2 COMAMONAS TESTOSTERONI COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: QUINOHEMOPROTEIN ETHANOL DEHYDROGENASE TYPE 1; COMPND 5 EC: 1.1.99.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI; SOURCE 3 ORGANISM_TAXID: 285 KEYWDS BETA-PROPELLER FOLD, CYTOCHROME C, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.ROZEBOOM,A.OUBRIE REVDAT 6 16-AUG-23 1KB0 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1KB0 1 VERSN REVDAT 4 24-FEB-09 1KB0 1 VERSN REVDAT 3 01-APR-03 1KB0 1 JRNL REVDAT 2 13-FEB-02 1KB0 1 JRNL REVDAT 1 28-DEC-01 1KB0 0 JRNL AUTH A.OUBRIE,H.J.ROZEBOOM,K.H.KALK,E.G.HUIZINGA,B.W.DIJKSTRA JRNL TITL CRYSTAL STRUCTURE OF QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE JRNL TITL 2 FROM COMAMONAS TESTOSTERONI: STRUCTURAL BASIS FOR SUBSTRATE JRNL TITL 3 OXIDATION AND ELECTRON TRANSFER. JRNL REF J.BIOL.CHEM. V. 277 3727 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11714714 JRNL DOI 10.1074/JBC.M109403200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.OUBRIE,E.G.HUIZINGA,H.J.ROZEBOOM,K.H.KALK,G.A.DE JONG, REMARK 1 AUTH 2 J.A.DUINE,B.W.DIJKSTRA REMARK 1 TITL CRYSTALLIZATION OF QUINOHAEMOPROTEIN ALCOHOL DEHYDROGENASE REMARK 1 TITL 2 FROM COMAMONAS TESTOSTERONI: CRYSTALS WITH UNIQUE OPTICAL REMARK 1 TITL 3 PROPERTIES. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 1732 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444901013002 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1721072.940 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 111086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5671 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 17480 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 930 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 1016 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.25000 REMARK 3 B22 (A**2) : -1.93000 REMARK 3 B33 (A**2) : -2.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.13 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.370 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.110 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.640 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.450 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 64.94 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PQQ.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : PARAM19X.HEME REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : TOPH19.HEM REMARK 3 TOPOLOGY FILE 4 : PQQ.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HOH 492 BELONGS TO CONFORMATION A OF REMARK 3 ASP 657. REMARK 4 REMARK 4 1KB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1000014767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-98 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9076 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111086 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : 0.34000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: OSCILLATION REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 1EEE (NOW KNOWN AS 1FLG) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, MES, PH 5.7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.96000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.16550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.96000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.16550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 574 REMARK 465 VAL A 575 REMARK 465 ALA A 576 REMARK 465 GLN A 577 REMARK 465 ARG A 578 REMARK 465 LYS A 676 REMARK 465 PRO A 677 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 23 N - CA - C ANGL. DEV. = 22.9 DEGREES REMARK 500 ALA A 24 N - CA - C ANGL. DEV. = -24.7 DEGREES REMARK 500 ARG A 272 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 -56.15 -26.58 REMARK 500 ALA A 24 -106.36 136.40 REMARK 500 ARG A 25 -6.49 -150.18 REMARK 500 THR A 26 56.75 36.75 REMARK 500 VAL A 34 -45.38 73.97 REMARK 500 ARG A 67 -167.38 -107.75 REMARK 500 ALA A 84 -151.86 -123.70 REMARK 500 CYS A 117 41.08 -142.39 REMARK 500 ASP A 118 158.22 86.57 REMARK 500 LYS A 128 60.87 34.56 REMARK 500 ASP A 246 -90.58 -143.25 REMARK 500 ASN A 279 61.19 61.55 REMARK 500 TYR A 281 44.49 -108.77 REMARK 500 TRP A 307 23.18 -142.29 REMARK 500 ASN A 394 -151.00 -108.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 122 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 185 OE1 REMARK 620 2 GLU A 185 OE2 52.6 REMARK 620 3 ASN A 263 OD1 140.8 93.1 REMARK 620 4 ASP A 308 OD1 112.4 75.3 68.1 REMARK 620 5 PQQ A1800 O5 100.0 132.5 118.6 84.5 REMARK 620 6 PQQ A1800 N6 79.3 129.5 122.9 147.0 62.7 REMARK 620 7 PQQ A1800 O7A 82.4 92.9 81.1 145.9 124.4 63.4 REMARK 620 8 TFB A1810 OXT 60.0 73.6 135.0 66.9 58.9 96.9 140.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 608 NE2 REMARK 620 2 HEC A 802 NA 92.0 REMARK 620 3 HEC A 802 NB 88.4 90.5 REMARK 620 4 HEC A 802 NC 87.9 179.6 89.1 REMARK 620 5 HEC A 802 ND 90.1 88.9 178.4 91.5 REMARK 620 6 MET A 647 SD 172.8 94.4 88.1 85.7 93.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TFB A 1810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQQ A 1800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1823 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1824 DBREF 1KB0 A 1 677 UNP Q46444 QHED_COMTE 32 708 SEQADV 1KB0 ASN A 181 UNP Q46444 LYS 212 SEE REMARK 999 SEQADV 1KB0 GLY A 182 UNP Q46444 ARG 213 SEE REMARK 999 SEQADV 1KB0 GLY A 566 UNP Q46444 ALA 597 SEE REMARK 999 SEQADV 1KB0 TRO A 512 UNP Q46444 TRP 543 MODIFIED RESIDUE SEQRES 1 A 677 THR GLY PRO ALA ALA GLN ALA ALA ALA ALA VAL GLN ARG SEQRES 2 A 677 VAL ASP GLY ASP PHE ILE ARG ALA ASN ALA ALA ARG THR SEQRES 3 A 677 PRO ASP TRP PRO THR ILE GLY VAL ASP TYR ALA GLU THR SEQRES 4 A 677 ARG TYR SER ARG LEU ASP GLN ILE ASN ALA ALA ASN VAL SEQRES 5 A 677 LYS ASP LEU GLY LEU ALA TRP SER TYR ASN LEU GLU SER SEQRES 6 A 677 THR ARG GLY VAL GLU ALA THR PRO VAL VAL VAL ASP GLY SEQRES 7 A 677 ILE MET TYR VAL SER ALA SER TRP SER VAL VAL HIS ALA SEQRES 8 A 677 ILE ASP THR ARG THR GLY ASN ARG ILE TRP THR TYR ASP SEQRES 9 A 677 PRO GLN ILE ASP ARG SER THR GLY PHE LYS GLY CYS CYS SEQRES 10 A 677 ASP VAL VAL ASN ARG GLY VAL ALA LEU TRP LYS GLY LYS SEQRES 11 A 677 VAL TYR VAL GLY ALA TRP ASP GLY ARG LEU ILE ALA LEU SEQRES 12 A 677 ASP ALA ALA THR GLY LYS GLU VAL TRP HIS GLN ASN THR SEQRES 13 A 677 PHE GLU GLY GLN LYS GLY SER LEU THR ILE THR GLY ALA SEQRES 14 A 677 PRO ARG VAL PHE LYS GLY LYS VAL ILE ILE GLY ASN GLY SEQRES 15 A 677 GLY ALA GLU TYR GLY VAL ARG GLY TYR ILE THR ALA TYR SEQRES 16 A 677 ASP ALA GLU THR GLY GLU ARG LYS TRP ARG TRP PHE SER SEQRES 17 A 677 VAL PRO GLY ASP PRO SER LYS PRO PHE GLU ASP GLU SER SEQRES 18 A 677 MET LYS ARG ALA ALA ARG THR TRP ASP PRO SER GLY LYS SEQRES 19 A 677 TRP TRP GLU ALA GLY GLY GLY GLY THR MET TRP ASP SER SEQRES 20 A 677 MET THR PHE ASP ALA GLU LEU ASN THR MET TYR VAL GLY SEQRES 21 A 677 THR GLY ASN GLY SER PRO TRP SER HIS LYS VAL ARG SER SEQRES 22 A 677 PRO LYS GLY GLY ASP ASN LEU TYR LEU ALA SER ILE VAL SEQRES 23 A 677 ALA LEU ASP PRO ASP THR GLY LYS TYR LYS TRP HIS TYR SEQRES 24 A 677 GLN GLU THR PRO GLY ASP ASN TRP ASP TYR THR SER THR SEQRES 25 A 677 GLN PRO MET ILE LEU ALA ASP ILE LYS ILE ALA GLY LYS SEQRES 26 A 677 PRO ARG LYS VAL ILE LEU HIS ALA PRO LYS ASN GLY PHE SEQRES 27 A 677 PHE PHE VAL LEU ASP ARG THR ASN GLY LYS PHE ILE SER SEQRES 28 A 677 ALA LYS ASN PHE VAL PRO VAL ASN TRP ALA SER GLY TYR SEQRES 29 A 677 ASP LYS HIS GLY LYS PRO ILE GLY ILE ALA ALA ALA ARG SEQRES 30 A 677 ASP GLY SER LYS PRO GLN ASP ALA VAL PRO GLY PRO TYR SEQRES 31 A 677 GLY ALA HIS ASN TRP HIS PRO MET SER PHE ASN PRO GLN SEQRES 32 A 677 THR GLY LEU VAL TYR LEU PRO ALA GLN ASN VAL PRO VAL SEQRES 33 A 677 ASN LEU MET ASP ASP LYS LYS TRP GLU PHE ASN GLN ALA SEQRES 34 A 677 GLY PRO GLY LYS PRO GLN SER GLY THR GLY TRP ASN THR SEQRES 35 A 677 ALA LYS PHE PHE ASN ALA GLU PRO PRO LYS SER LYS PRO SEQRES 36 A 677 PHE GLY ARG LEU LEU ALA TRP ASP PRO VAL ALA GLN LYS SEQRES 37 A 677 ALA ALA TRP SER VAL GLU HIS VAL SER PRO TRP ASN GLY SEQRES 38 A 677 GLY THR LEU THR THR ALA GLY ASN VAL VAL PHE GLN GLY SEQRES 39 A 677 THR ALA ASP GLY ARG LEU VAL ALA TYR HIS ALA ALA THR SEQRES 40 A 677 GLY GLU LYS LEU TRO GLU ALA PRO THR GLY THR GLY VAL SEQRES 41 A 677 VAL ALA ALA PRO SER THR TYR MET VAL ASP GLY ARG GLN SEQRES 42 A 677 TYR VAL SER VAL ALA VAL GLY TRP GLY GLY VAL TYR GLY SEQRES 43 A 677 LEU ALA ALA ARG ALA THR GLU ARG GLN GLY PRO GLY THR SEQRES 44 A 677 VAL TYR THR PHE VAL VAL GLY GLY LYS ALA ARG MET PRO SEQRES 45 A 677 GLU PHE VAL ALA GLN ARG THR GLY GLN LEU LEU GLN GLY SEQRES 46 A 677 VAL LYS TYR ASP PRO ALA LYS VAL GLU ALA GLY THR MET SEQRES 47 A 677 LEU TYR VAL ALA ASN CYS VAL PHE CYS HIS GLY VAL PRO SEQRES 48 A 677 GLY VAL ASP ARG GLY GLY ASN ILE PRO ASN LEU GLY TYR SEQRES 49 A 677 MET ASP ALA SER TYR ILE GLU ASN LEU PRO ASN PHE VAL SEQRES 50 A 677 PHE LYS GLY PRO ALA MET VAL ARG GLY MET PRO ASP PHE SEQRES 51 A 677 THR GLY LYS LEU SER GLY ASP ASP VAL GLU SER LEU LYS SEQRES 52 A 677 ALA PHE ILE GLN GLY THR ALA ASP ALA ILE ARG PRO LYS SEQRES 53 A 677 PRO MODRES 1KB0 TRO A 512 TRP 2-HYDROXY-TRYPTOPHAN HET TRO A 512 15 HET CA A 801 1 HET HEC A 802 43 HET TFB A1810 8 HET PQQ A1800 24 HET GOL A1820 6 HET GOL A1823 6 HET GOL A1824 6 HETNAM TRO 2-HYDROXY-TRYPTOPHAN HETNAM CA CALCIUM ION HETNAM HEC HEME C HETNAM TFB TETRAHYDROFURAN-2-CARBOXYLIC ACID HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TRO C11 H12 N2 O3 FORMUL 2 CA CA 2+ FORMUL 3 HEC C34 H34 FE N4 O4 FORMUL 4 TFB C5 H8 O3 FORMUL 5 PQQ C14 H6 N2 O8 FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 HOH *1016(H2 O) HELIX 1 1 THR A 1 ARG A 13 1 13 HELIX 2 2 ASP A 15 ASN A 22 1 8 HELIX 3 3 ALA A 23 ARG A 25 5 3 HELIX 4 4 ASN A 51 LEU A 55 5 5 HELIX 5 5 SER A 85 SER A 87 5 3 HELIX 6 6 ASP A 108 GLY A 115 5 8 HELIX 7 7 ASP A 219 ARG A 227 1 9 HELIX 8 8 THR A 228 TRP A 229 5 2 HELIX 9 9 ASP A 230 LYS A 234 5 5 HELIX 10 10 SER A 268 SER A 273 1 6 HELIX 11 11 ALA A 374 ASP A 378 5 5 HELIX 12 12 GLN A 435 GLY A 439 5 5 HELIX 13 13 GLY A 542 ALA A 549 1 8 HELIX 14 14 ASP A 589 ALA A 591 5 3 HELIX 15 15 LYS A 592 CYS A 604 1 13 HELIX 16 16 CYS A 604 GLY A 609 1 6 HELIX 17 17 ASN A 621 MET A 625 5 5 HELIX 18 18 ASP A 626 ASN A 632 1 7 HELIX 19 19 ASN A 632 PHE A 638 1 7 HELIX 20 20 ALA A 642 GLY A 646 5 5 HELIX 21 21 ASP A 657 ARG A 674 1 18 SHEET 1 A 5 TYR A 41 SER A 42 0 SHEET 2 A 5 THR A 483 THR A 486 1 O THR A 485 N SER A 42 SHEET 3 A 5 VAL A 490 GLY A 494 -1 O PHE A 492 N LEU A 484 SHEET 4 A 5 ARG A 499 HIS A 504 -1 O TYR A 503 N VAL A 491 SHEET 5 A 5 LYS A 510 PRO A 515 -1 O LEU A 511 N ALA A 502 SHEET 1 B 4 GLY A 56 ASN A 62 0 SHEET 2 B 4 THR A 559 VAL A 564 -1 O VAL A 564 N GLY A 56 SHEET 3 B 4 ARG A 532 VAL A 539 -1 N VAL A 539 O THR A 559 SHEET 4 B 4 SER A 525 VAL A 529 -1 N TYR A 527 O TYR A 534 SHEET 1 C 4 VAL A 74 VAL A 76 0 SHEET 2 C 4 ILE A 79 SER A 83 -1 O TYR A 81 N VAL A 74 SHEET 3 C 4 VAL A 89 ASP A 93 -1 O HIS A 90 N VAL A 82 SHEET 4 C 4 ARG A 99 TYR A 103 -1 O ILE A 100 N ALA A 91 SHEET 1 D 4 ALA A 125 TRP A 127 0 SHEET 2 D 4 LYS A 130 GLY A 134 -1 O TYR A 132 N ALA A 125 SHEET 3 D 4 ARG A 139 ASP A 144 -1 O LEU A 143 N VAL A 131 SHEET 4 D 4 GLU A 150 ASN A 155 -1 O VAL A 151 N ALA A 142 SHEET 1 E 4 ARG A 171 PHE A 173 0 SHEET 2 E 4 LYS A 176 ILE A 179 -1 O ILE A 178 N ARG A 171 SHEET 3 E 4 TYR A 191 ASP A 196 -1 O TYR A 195 N VAL A 177 SHEET 4 E 4 ARG A 202 PHE A 207 -1 O LYS A 203 N ALA A 194 SHEET 1 F 2 GLY A 240 GLY A 241 0 SHEET 2 F 2 GLY A 264 SER A 265 -1 O SER A 265 N GLY A 240 SHEET 1 G 4 MET A 248 ASP A 251 0 SHEET 2 G 4 THR A 256 GLY A 260 -1 O THR A 256 N ASP A 251 SHEET 3 G 4 SER A 284 LEU A 288 -1 O LEU A 288 N MET A 257 SHEET 4 G 4 TYR A 295 GLN A 300 -1 O LYS A 296 N ALA A 287 SHEET 1 H 4 ILE A 316 ILE A 322 0 SHEET 2 H 4 LYS A 325 HIS A 332 -1 O LEU A 331 N ILE A 316 SHEET 3 H 4 PHE A 338 ASP A 343 -1 O PHE A 340 N HIS A 332 SHEET 4 H 4 PHE A 349 ASN A 354 -1 O LYS A 353 N PHE A 339 SHEET 1 I 2 ALA A 361 TYR A 364 0 SHEET 2 I 2 PRO A 370 GLY A 372 -1 O ILE A 371 N GLY A 363 SHEET 1 J 3 GLN A 383 ASP A 384 0 SHEET 2 J 3 ASN A 417 ASP A 420 -1 O LEU A 418 N GLN A 383 SHEET 3 J 3 LYS A 444 PHE A 446 -1 O PHE A 445 N MET A 419 SHEET 1 K 4 SER A 399 ASN A 401 0 SHEET 2 K 4 LEU A 406 ASN A 413 -1 O TYR A 408 N SER A 399 SHEET 3 K 4 PHE A 456 ASP A 463 -1 O TRP A 462 N VAL A 407 SHEET 4 K 4 LYS A 468 HIS A 475 -1 O ALA A 470 N ALA A 461 SSBOND 1 CYS A 116 CYS A 117 1555 1555 2.05 LINK C LEU A 511 N TRO A 512 1555 1555 1.34 LINK C TRO A 512 N GLU A 513 1555 1555 1.34 LINK SG CYS A 604 CAB HEC A 802 1555 1555 1.86 LINK SG CYS A 607 CAC HEC A 802 1555 1555 1.81 LINK OE1 GLU A 185 CA CA A 801 1555 1555 2.44 LINK OE2 GLU A 185 CA CA A 801 1555 1555 2.55 LINK OD1 ASN A 263 CA CA A 801 1555 1555 2.38 LINK OD1 ASP A 308 CA CA A 801 1555 1555 2.66 LINK NE2 HIS A 608 FE HEC A 802 1555 1555 2.07 LINK SD MET A 647 FE HEC A 802 1555 1555 2.29 LINK CA CA A 801 O5 PQQ A1800 1555 1555 2.53 LINK CA CA A 801 N6 PQQ A1800 1555 1555 2.50 LINK CA CA A 801 O7A PQQ A1800 1555 1555 2.42 LINK CA CA A 801 OXT TFB A1810 1555 1555 3.34 CISPEP 1 ALA A 23 ALA A 24 0 2.02 CISPEP 2 SER A 265 PRO A 266 0 -4.16 CISPEP 3 LEU A 280 TYR A 281 0 1.04 CISPEP 4 VAL A 386 PRO A 387 0 3.16 SITE 1 AC1 5 GLU A 185 ASN A 263 ASP A 308 PQQ A1800 SITE 2 AC1 5 TFB A1810 SITE 1 AC2 21 ARG A 67 GLN A 435 ASN A 603 CYS A 604 SITE 2 AC2 21 CYS A 607 HIS A 608 PRO A 620 MET A 625 SITE 3 AC2 21 TYR A 629 LEU A 633 PHE A 636 PRO A 641 SITE 4 AC2 21 ALA A 642 ARG A 645 GLY A 646 MET A 647 SITE 5 AC2 21 PRO A 648 PHE A 650 HOH A2067 HOH A2541 SITE 6 AC2 21 HOH A2726 SITE 1 AC3 10 CYS A 116 CYS A 117 GLU A 185 TRP A 267 SITE 2 AC3 10 ASP A 308 PRO A 389 TRP A 440 CA A 801 SITE 3 AC3 10 PQQ A1800 HOH A2840 SITE 1 AC4 24 GLU A 70 CYS A 116 CYS A 117 VAL A 120 SITE 2 AC4 24 ARG A 122 THR A 167 GLY A 182 GLY A 183 SITE 3 AC4 24 ALA A 184 GLU A 185 THR A 243 TRP A 245 SITE 4 AC4 24 ASN A 263 ASP A 308 LYS A 335 ASN A 394 SITE 5 AC4 24 TRP A 395 TRP A 479 GLY A 543 VAL A 544 SITE 6 AC4 24 CA A 801 TFB A1810 HOH A1845 HOH A1856 SITE 1 AC5 7 GLU A 474 HIS A 475 ARG A 499 TYR A 503 SITE 2 AC5 7 LYS A 510 HOH A1866 HOH A2611 SITE 1 AC6 10 TRP A 541 ARG A 550 THR A 552 ARG A 554 SITE 2 AC6 10 GLN A 555 GLY A 617 ASN A 618 HOH A1913 SITE 3 AC6 10 HOH A1945 HOH A2575 SITE 1 AC7 2 HOH A2447 HOH A2635 CRYST1 97.920 74.331 92.332 90.00 105.67 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010212 0.000000 0.002865 0.00000 SCALE2 0.000000 0.013453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011249 0.00000