data_1KC0 # _entry.id 1KC0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1KC0 RCSB RCSB014793 WWPDB D_1000014793 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.pdb_id 1N2S _pdbx_database_PDB_obs_spr.replace_pdb_id 1KC0 _pdbx_database_PDB_obs_spr.date 2002-11-01 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1KBZ 'apo structure' unspecified PDB 1KC1 'NADPH complex' unspecified PDB 1KC3 'NADPH/DTDP-L-RHAMNOSE complex' unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1KC0 _pdbx_database_status.recvd_initial_deposition_date 2001-11-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Blankenfeldt, W.' 1 'Kerr, I.D.' 2 'Giraud, M.F.' 3 'McMiken, H.J.' 4 'Leonard, G.A.' 5 'Whitfield, C.' 6 'Messner, P.' 7 'Graninger, M.' 8 'Naismith, J.H.' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Variation on a theme of SDR. dTDP-6-deoxy-L- lyxo-4-hexulose reductase (RmlD) shows a new Mg2+-dependent dimerization mode.' Structure 10 773 786 2002 STRUE6 UK 0969-2126 2005 ? 12057193 '10.1016/S0969-2126(02)00770-0' 1 ;Overexpression, purification, crystallisation and preliminary structural study of dTDP-6-deoxy-lyxo-4-reductase (RmlD) the fourth enzyme of the dTDP-rhanose synthesis pathway,from Salmonella entrica serovar Typhimurim ; 'Acta Crystallogr., Sect.D' 55 2043 2046 1999 ABCRE6 DK 0907-4449 0766 ? ? 10.1107/S0907444999012251 2 'The rhamnose pathway' Curr.Opin.Struct.Biol. 10 687 696 2000 COSBEF UK 0959-440X 0801 ? ? '10.1016/S0959-440X(00)00145-7' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Blankenfeldt, W.' 1 primary 'Kerr, I.D.' 2 primary 'Giraud, M.F.' 3 primary 'McMiken, H.J.' 4 primary 'Leonard, G.' 5 primary 'Whitfield, C.' 6 primary 'Messner, P.' 7 primary 'Graninger, M.' 8 primary 'Naismith, J.H.' 9 1 'Giraud, M.F.' 10 1 'McMiken, H.J.' 11 1 'Leonard, G.A.' 12 1 'Messner, P.' 13 1 'Whitfield, C.' 14 1 'Naismith, J.H.' 15 2 'Giraud, M.F.' 16 2 'Naismith, J.H.' 17 # _cell.entry_id 1KC0 _cell.length_a 47.435 _cell.length_b 71.572 _cell.length_c 82.281 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KC0 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'dTDP-glucose oxidoreductase' 32476.787 1 1.1.1.133 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 non-polymer syn 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 745.421 1 ? ? ? ? 5 water nat water 18.015 80 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;dTDP-6-deoxy-L-lyxo-4-hexulose reductase; DTDP-4-DEHYDRORHAMNOSE REDUCTASE; DTDP-4-KETO-L-RHAMNOSE REDUCTASE; DTDP-6-DEOXY-L-MANNOSE DEHYDROGENASE; DTDP-L-RHAMNOSE SYNTHETASE; rfbA protein; TDP-rhamnose synthetase ; # _entity_name_sys.entity_id 1 _entity_name_sys.name E.C.1.1.1.133 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ILE n 1 4 LEU n 1 5 LEU n 1 6 PHE n 1 7 GLY n 1 8 LYS n 1 9 THR n 1 10 GLY n 1 11 GLN n 1 12 VAL n 1 13 GLY n 1 14 TRP n 1 15 GLU n 1 16 LEU n 1 17 GLN n 1 18 ARG n 1 19 SER n 1 20 LEU n 1 21 ALA n 1 22 PRO n 1 23 VAL n 1 24 GLY n 1 25 ASN n 1 26 LEU n 1 27 ILE n 1 28 ALA n 1 29 LEU n 1 30 ASP n 1 31 VAL n 1 32 HIS n 1 33 SER n 1 34 LYS n 1 35 GLU n 1 36 PHE n 1 37 CYS n 1 38 GLY n 1 39 ASP n 1 40 PHE n 1 41 SER n 1 42 ASN n 1 43 PRO n 1 44 LYS n 1 45 GLY n 1 46 VAL n 1 47 ALA n 1 48 GLU n 1 49 THR n 1 50 VAL n 1 51 ARG n 1 52 LYS n 1 53 LEU n 1 54 ARG n 1 55 PRO n 1 56 ASP n 1 57 VAL n 1 58 ILE n 1 59 VAL n 1 60 ASN n 1 61 ALA n 1 62 ALA n 1 63 ALA n 1 64 HIS n 1 65 THR n 1 66 ALA n 1 67 VAL n 1 68 ASP n 1 69 LYS n 1 70 ALA n 1 71 GLU n 1 72 SER n 1 73 GLU n 1 74 PRO n 1 75 GLU n 1 76 LEU n 1 77 ALA n 1 78 GLN n 1 79 LEU n 1 80 LEU n 1 81 ASN n 1 82 ALA n 1 83 THR n 1 84 SER n 1 85 VAL n 1 86 GLU n 1 87 ALA n 1 88 ILE n 1 89 ALA n 1 90 LYS n 1 91 ALA n 1 92 ALA n 1 93 ASN n 1 94 GLU n 1 95 THR n 1 96 GLY n 1 97 ALA n 1 98 TRP n 1 99 VAL n 1 100 VAL n 1 101 HIS n 1 102 TYR n 1 103 SER n 1 104 THR n 1 105 ASP n 1 106 TYR n 1 107 VAL n 1 108 PHE n 1 109 PRO n 1 110 GLY n 1 111 THR n 1 112 GLY n 1 113 ASP n 1 114 ILE n 1 115 PRO n 1 116 TRP n 1 117 GLN n 1 118 GLU n 1 119 THR n 1 120 ASP n 1 121 ALA n 1 122 THR n 1 123 SER n 1 124 PRO n 1 125 LEU n 1 126 ASN n 1 127 VAL n 1 128 TYR n 1 129 GLY n 1 130 LYS n 1 131 THR n 1 132 LYS n 1 133 LEU n 1 134 ALA n 1 135 GLY n 1 136 GLU n 1 137 LYS n 1 138 ALA n 1 139 LEU n 1 140 GLN n 1 141 ASP n 1 142 ASN n 1 143 CYS n 1 144 PRO n 1 145 LYS n 1 146 HIS n 1 147 LEU n 1 148 ILE n 1 149 PHE n 1 150 ARG n 1 151 THR n 1 152 SER n 1 153 TRP n 1 154 VAL n 1 155 TYR n 1 156 ALA n 1 157 GLY n 1 158 LYS n 1 159 GLY n 1 160 ASN n 1 161 ASN n 1 162 PHE n 1 163 ALA n 1 164 LYS n 1 165 THR n 1 166 MET n 1 167 LEU n 1 168 ARG n 1 169 LEU n 1 170 ALA n 1 171 LYS n 1 172 GLU n 1 173 ARG n 1 174 GLN n 1 175 THR n 1 176 LEU n 1 177 SER n 1 178 VAL n 1 179 ILE n 1 180 ASN n 1 181 ASP n 1 182 GLN n 1 183 TYR n 1 184 GLY n 1 185 ALA n 1 186 PRO n 1 187 THR n 1 188 GLY n 1 189 ALA n 1 190 GLU n 1 191 LEU n 1 192 LEU n 1 193 ALA n 1 194 ASP n 1 195 CYS n 1 196 THR n 1 197 ALA n 1 198 HIS n 1 199 ALA n 1 200 ILE n 1 201 ARG n 1 202 VAL n 1 203 ALA n 1 204 LEU n 1 205 ASN n 1 206 LYS n 1 207 PRO n 1 208 GLU n 1 209 VAL n 1 210 ALA n 1 211 GLY n 1 212 LEU n 1 213 TYR n 1 214 HIS n 1 215 LEU n 1 216 VAL n 1 217 ALA n 1 218 GLY n 1 219 GLY n 1 220 THR n 1 221 THR n 1 222 THR n 1 223 TRP n 1 224 HIS n 1 225 ASP n 1 226 TYR n 1 227 ALA n 1 228 ALA n 1 229 LEU n 1 230 VAL n 1 231 PHE n 1 232 ASP n 1 233 GLU n 1 234 ALA n 1 235 ARG n 1 236 LYS n 1 237 ALA n 1 238 GLY n 1 239 ILE n 1 240 THR n 1 241 LEU n 1 242 ALA n 1 243 LEU n 1 244 THR n 1 245 GLU n 1 246 LEU n 1 247 ASN n 1 248 ALA n 1 249 VAL n 1 250 PRO n 1 251 THR n 1 252 SER n 1 253 ALA n 1 254 TYR n 1 255 PRO n 1 256 THR n 1 257 PRO n 1 258 ALA n 1 259 SER n 1 260 ARG n 1 261 PRO n 1 262 GLY n 1 263 ASN n 1 264 SER n 1 265 ARG n 1 266 LEU n 1 267 ASN n 1 268 THR n 1 269 GLU n 1 270 LYS n 1 271 PHE n 1 272 GLN n 1 273 ARG n 1 274 ASN n 1 275 PHE n 1 276 ASP n 1 277 LEU n 1 278 ILE n 1 279 LEU n 1 280 PRO n 1 281 GLN n 1 282 TRP n 1 283 GLU n 1 284 LEU n 1 285 GLY n 1 286 VAL n 1 287 LYS n 1 288 ARG n 1 289 MET n 1 290 LEU n 1 291 THR n 1 292 GLU n 1 293 MET n 1 294 PHE n 1 295 THR n 1 296 THR n 1 297 THR n 1 298 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bacteria _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene rfbA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella enterica serovar Typhimurium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(lambda DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name EMBL _struct_ref.db_code CAA40116 _struct_ref.pdbx_db_accession 47890 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLL NATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGN NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGIT LALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTEMFTTTTI ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KC0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 299 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 47890 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 299 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 299 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NDP non-polymer . 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ? 'C21 H30 N7 O17 P3' 745.421 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1KC0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.80 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details 'Tris, PEG 4000, MgCl2, pH 8.0, VAPOR DIFFUSION, SITTING DROP at 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-09-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'Single wavelenth' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF, BEAMLINE ID14EH1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14EH1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.934 # _reflns.entry_id 1KC0 _reflns.observed_criterion_sigma_I 1.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 54.23 _reflns.d_resolution_high 2.0 _reflns.number_obs 19137 _reflns.number_all 19137 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.0800000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 5.6 _reflns.B_iso_Wilson_estimate 36 _reflns.pdbx_redundancy 4.7 _reflns.R_free_details ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.4780000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1KC0 _refine.ls_number_reflns_obs 18528 _refine.ls_number_reflns_all 18528 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 81.65 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.70 _refine.ls_R_factor_obs 0.2019900 _refine.ls_R_factor_all 0.2019000 _refine.ls_R_factor_R_work 0.1992300 _refine.ls_R_factor_R_free 0.2531100 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 996 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 28.46 _refine.aniso_B[1][1] 2.45 _refine.aniso_B[2][2] -3.95 _refine.aniso_B[3][3] 1.50 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'TLS-option with cofactor-binding, substrate-binding domains and waters as three separate TLS-bodies was used throughout.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.190 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free 0.190 _refine.overall_SU_ML 0.204 _refine.overall_SU_B 7.233 _refine.pdbx_overall_ESU_R 0.219 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1KC0 _refine_analyze.Luzzati_coordinate_error_obs 0.220 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.189 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2296 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 2430 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 81.65 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.021 ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.863 1.971 ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 0.921 1.50 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 1.563 2.00 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 2.456 3.00 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 3.568 4.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.2740000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2930000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.number_reflns_obs 1433 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1KC0 _struct.title 'Crystal structure of dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) in complex with NADH' _struct.pdbx_descriptor 'dTDP-glucose oxidoreductase (E.C.1.1.1.133)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KC0 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'Rossman-fold, sugar-nucleotide-binding domain, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a dimer generated by the twofold axis along c: -x, -y, z.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 10 ? LEU A 20 ? GLY A 10 LEU A 20 1 ? 11 HELX_P HELX_P2 2 ASN A 42 ? ARG A 54 ? ASN A 42 ARG A 54 1 ? 13 HELX_P HELX_P3 3 ASP A 68 ? GLU A 73 ? ASP A 68 GLU A 73 1 ? 6 HELX_P HELX_P4 4 GLU A 73 ? ALA A 82 ? GLU A 73 ALA A 82 1 ? 10 HELX_P HELX_P5 5 ALA A 82 ? THR A 95 ? ALA A 82 THR A 95 1 ? 14 HELX_P HELX_P6 6 TYR A 106 ? PHE A 108 ? TYR A 106 PHE A 108 5 ? 3 HELX_P HELX_P7 7 ASN A 126 ? CYS A 143 ? ASN A 126 CYS A 143 1 ? 18 HELX_P HELX_P8 8 ASN A 161 ? ARG A 173 ? ASN A 161 ARG A 173 1 ? 13 HELX_P HELX_P9 9 ALA A 189 ? LYS A 206 ? ALA A 189 LYS A 206 1 ? 18 HELX_P HELX_P10 10 PRO A 207 ? ALA A 210 ? PRO A 207 ALA A 210 5 ? 4 HELX_P HELX_P11 11 TRP A 223 ? ALA A 237 ? TRP A 223 ALA A 237 1 ? 15 HELX_P HELX_P12 12 THR A 268 ? ASP A 276 ? THR A 268 ASP A 276 1 ? 9 HELX_P HELX_P13 13 GLN A 281 ? THR A 295 ? GLN A 281 THR A 295 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? parallel C 1 2 ? parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 25 ? LEU A 29 ? ASN A 25 LEU A 29 A 2 ASN A 2 ? PHE A 6 ? ASN A 2 PHE A 6 A 3 VAL A 57 ? ASN A 60 ? VAL A 57 ASN A 60 A 4 TRP A 98 ? THR A 104 ? TRP A 98 THR A 104 A 5 HIS A 146 ? THR A 151 ? HIS A 146 THR A 151 A 6 GLY A 211 ? HIS A 214 ? GLY A 211 HIS A 214 B 1 VAL A 154 ? TYR A 155 ? VAL A 154 TYR A 155 B 2 THR A 187 ? GLY A 188 ? THR A 187 GLY A 188 C 1 THR A 175 ? ILE A 179 ? THR A 175 ILE A 179 C 2 GLU A 245 ? VAL A 249 ? GLU A 245 VAL A 249 D 1 TYR A 183 ? GLY A 184 ? TYR A 183 GLY A 184 D 2 THR A 221 ? THR A 222 ? THR A 221 THR A 222 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 25 ? O ASN A 25 N ILE A 3 ? N ILE A 3 A 2 3 N LEU A 4 ? N LEU A 4 O VAL A 59 ? O VAL A 59 A 3 4 N ILE A 58 ? N ILE A 58 O TRP A 98 ? O TRP A 98 A 4 5 N HIS A 101 ? N HIS A 101 O PHE A 149 ? O PHE A 149 A 5 6 N ILE A 148 ? N ILE A 148 O TYR A 213 ? O TYR A 213 B 1 2 N TYR A 155 ? N TYR A 155 O THR A 187 ? O THR A 187 C 1 2 N LEU A 176 ? N LEU A 176 O ASN A 247 ? O ASN A 247 D 1 2 N GLY A 184 ? N GLY A 184 O THR A 221 ? O THR A 221 # _database_PDB_matrix.entry_id 1KC0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KC0 _atom_sites.fract_transf_matrix[1][1] 0.021082 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013972 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012154 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 TRP 98 98 98 TRP TRP A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 HIS 101 101 101 HIS HIS A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 TRP 116 116 116 TRP TRP A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 GLN 140 140 140 GLN GLN A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 CYS 143 143 143 CYS CYS A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 THR 151 151 151 THR THR A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 TRP 153 153 153 TRP TRP A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 TYR 155 155 155 TYR TYR A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 PHE 162 162 162 PHE PHE A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 MET 166 166 166 MET MET A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 GLN 174 174 174 GLN GLN A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 ASN 180 180 180 ASN ASN A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 GLN 182 182 182 GLN GLN A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 GLY 184 184 184 GLY GLY A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 PRO 186 186 186 PRO PRO A . n A 1 187 THR 187 187 187 THR THR A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 ASP 194 194 194 ASP ASP A . n A 1 195 CYS 195 195 195 CYS CYS A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 ALA 197 197 197 ALA ALA A . n A 1 198 HIS 198 198 198 HIS HIS A . n A 1 199 ALA 199 199 199 ALA ALA A . n A 1 200 ILE 200 200 200 ILE ILE A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 VAL 202 202 202 VAL VAL A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 ASN 205 205 205 ASN ASN A . n A 1 206 LYS 206 206 206 LYS LYS A . n A 1 207 PRO 207 207 207 PRO PRO A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 TYR 213 213 213 TYR TYR A . n A 1 214 HIS 214 214 214 HIS HIS A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 VAL 216 216 216 VAL VAL A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 THR 220 220 220 THR THR A . n A 1 221 THR 221 221 221 THR THR A . n A 1 222 THR 222 222 222 THR THR A . n A 1 223 TRP 223 223 223 TRP TRP A . n A 1 224 HIS 224 224 224 HIS HIS A . n A 1 225 ASP 225 225 225 ASP ASP A . n A 1 226 TYR 226 226 226 TYR TYR A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 ALA 228 228 228 ALA ALA A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 PHE 231 231 231 PHE PHE A . n A 1 232 ASP 232 232 232 ASP ASP A . n A 1 233 GLU 233 233 233 GLU GLU A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 LYS 236 236 236 LYS LYS A . n A 1 237 ALA 237 237 237 ALA ALA A . n A 1 238 GLY 238 238 238 GLY GLY A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 THR 240 240 240 THR THR A . n A 1 241 LEU 241 241 241 LEU LEU A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 THR 244 244 244 THR THR A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 ASN 247 247 247 ASN ASN A . n A 1 248 ALA 248 248 248 ALA ALA A . n A 1 249 VAL 249 249 249 VAL VAL A . n A 1 250 PRO 250 250 250 PRO PRO A . n A 1 251 THR 251 251 251 THR THR A . n A 1 252 SER 252 252 252 SER SER A . n A 1 253 ALA 253 253 253 ALA ALA A . n A 1 254 TYR 254 254 254 TYR TYR A . n A 1 255 PRO 255 255 255 PRO PRO A . n A 1 256 THR 256 256 256 THR THR A . n A 1 257 PRO 257 257 257 PRO PRO A . n A 1 258 ALA 258 258 258 ALA ALA A . n A 1 259 SER 259 259 259 SER SER A . n A 1 260 ARG 260 260 260 ARG ARG A . n A 1 261 PRO 261 261 261 PRO PRO A . n A 1 262 GLY 262 262 262 GLY GLY A . n A 1 263 ASN 263 263 263 ASN ASN A . n A 1 264 SER 264 264 264 SER SER A . n A 1 265 ARG 265 265 265 ARG ARG A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 ASN 267 267 267 ASN ASN A . n A 1 268 THR 268 268 268 THR THR A . n A 1 269 GLU 269 269 269 GLU GLU A . n A 1 270 LYS 270 270 270 LYS LYS A . n A 1 271 PHE 271 271 271 PHE PHE A . n A 1 272 GLN 272 272 272 GLN GLN A . n A 1 273 ARG 273 273 273 ARG ARG A . n A 1 274 ASN 274 274 274 ASN ASN A . n A 1 275 PHE 275 275 275 PHE PHE A . n A 1 276 ASP 276 276 276 ASP ASP A . n A 1 277 LEU 277 277 277 LEU LEU A . n A 1 278 ILE 278 278 278 ILE ILE A . n A 1 279 LEU 279 279 279 LEU LEU A . n A 1 280 PRO 280 280 280 PRO PRO A . n A 1 281 GLN 281 281 281 GLN GLN A . n A 1 282 TRP 282 282 282 TRP TRP A . n A 1 283 GLU 283 283 283 GLU GLU A . n A 1 284 LEU 284 284 284 LEU LEU A . n A 1 285 GLY 285 285 285 GLY GLY A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 LYS 287 287 287 LYS LYS A . n A 1 288 ARG 288 288 288 ARG ARG A . n A 1 289 MET 289 289 289 MET MET A . n A 1 290 LEU 290 290 290 LEU LEU A . n A 1 291 THR 291 291 291 THR THR A . n A 1 292 GLU 292 292 292 GLU GLU A . n A 1 293 MET 293 293 293 MET MET A . n A 1 294 PHE 294 294 294 PHE PHE A . n A 1 295 THR 295 295 295 THR THR A . n A 1 296 THR 296 296 296 THR THR A . n A 1 297 THR 297 297 297 THR THR A . n A 1 298 THR 298 298 298 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 501 501 MG MG ? . C 3 SO4 1 601 601 SO4 SO4 ? . D 4 NDP 1 901 901 NDP NDP ? . E 5 HOH 1 1 1 HOH HOH ? . E 5 HOH 2 2 2 HOH HOH ? . E 5 HOH 3 3 3 HOH HOH ? . E 5 HOH 4 4 4 HOH HOH ? . E 5 HOH 5 5 5 HOH HOH ? . E 5 HOH 6 6 6 HOH HOH ? . E 5 HOH 7 7 7 HOH HOH ? . E 5 HOH 8 8 8 HOH HOH ? . E 5 HOH 9 9 9 HOH HOH ? . E 5 HOH 10 10 10 HOH HOH ? . E 5 HOH 11 11 11 HOH HOH ? . E 5 HOH 12 12 12 HOH HOH ? . E 5 HOH 13 13 13 HOH HOH ? . E 5 HOH 14 14 14 HOH HOH ? . E 5 HOH 15 15 15 HOH HOH ? . E 5 HOH 16 16 16 HOH HOH ? . E 5 HOH 17 17 17 HOH HOH ? . E 5 HOH 18 18 18 HOH HOH ? . E 5 HOH 19 19 19 HOH HOH ? . E 5 HOH 20 20 20 HOH HOH ? . E 5 HOH 21 21 21 HOH HOH ? . E 5 HOH 22 22 22 HOH HOH ? . E 5 HOH 23 23 23 HOH HOH ? . E 5 HOH 24 24 24 HOH HOH ? . E 5 HOH 25 25 25 HOH HOH ? . E 5 HOH 26 26 26 HOH HOH ? . E 5 HOH 27 27 27 HOH HOH ? . E 5 HOH 28 28 28 HOH HOH ? . E 5 HOH 29 29 29 HOH HOH ? . E 5 HOH 30 30 30 HOH HOH ? . E 5 HOH 31 31 31 HOH HOH ? . E 5 HOH 32 32 32 HOH HOH ? . E 5 HOH 33 33 33 HOH HOH ? . E 5 HOH 34 34 34 HOH HOH ? . E 5 HOH 35 35 35 HOH HOH ? . E 5 HOH 36 36 36 HOH HOH ? . E 5 HOH 37 37 37 HOH HOH ? . E 5 HOH 38 38 38 HOH HOH ? . E 5 HOH 39 39 39 HOH HOH ? . E 5 HOH 40 40 40 HOH HOH ? . E 5 HOH 41 41 41 HOH HOH ? . E 5 HOH 42 42 42 HOH HOH ? . E 5 HOH 43 43 43 HOH HOH ? . E 5 HOH 44 44 44 HOH HOH ? . E 5 HOH 45 45 45 HOH HOH ? . E 5 HOH 46 46 46 HOH HOH ? . E 5 HOH 47 47 47 HOH HOH ? . E 5 HOH 48 48 48 HOH HOH ? . E 5 HOH 49 49 49 HOH HOH ? . E 5 HOH 50 50 50 HOH HOH ? . E 5 HOH 51 51 51 HOH HOH ? . E 5 HOH 52 52 52 HOH HOH ? . E 5 HOH 53 53 53 HOH HOH ? . E 5 HOH 54 54 54 HOH HOH ? . E 5 HOH 55 55 55 HOH HOH ? . E 5 HOH 56 56 56 HOH HOH ? . E 5 HOH 57 57 57 HOH HOH ? . E 5 HOH 58 58 58 HOH HOH ? . E 5 HOH 59 59 59 HOH HOH ? . E 5 HOH 60 60 60 HOH HOH ? . E 5 HOH 61 61 61 HOH HOH ? . E 5 HOH 62 62 62 HOH HOH ? . E 5 HOH 63 63 63 HOH HOH ? . E 5 HOH 64 64 64 HOH HOH ? . E 5 HOH 65 65 65 HOH HOH ? . E 5 HOH 66 66 66 HOH HOH ? . E 5 HOH 67 67 67 HOH HOH ? . E 5 HOH 68 68 68 HOH HOH ? . E 5 HOH 69 69 69 HOH HOH ? . E 5 HOH 70 70 70 HOH HOH ? . E 5 HOH 71 71 71 HOH HOH ? . E 5 HOH 72 72 72 HOH HOH ? . E 5 HOH 73 73 73 HOH HOH ? . E 5 HOH 74 74 74 HOH HOH ? . E 5 HOH 75 75 75 HOH HOH ? . E 5 HOH 76 76 76 HOH HOH ? . E 5 HOH 77 77 77 HOH HOH ? . E 5 HOH 78 78 78 HOH HOH ? . E 5 HOH 79 79 79 HOH HOH ? . E 5 HOH 80 80 80 HOH HOH ? . # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 . MG 501 ? B MG . 2 1 . HOH 1 ? E HOH . 3 1 . HOH 2 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-06-28 2 'Structure model' 1 1 2002-11-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data collection' . ? 1 SCALA 'data reduction' . ? 2 SOLVE 'model building' . ? 3 REFMAC refinement 5.0 ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLN 11 ? ? O . HOH 62 ? ? 2.13 2 1 N A LEU 246 ? ? O . HOH 32 ? ? 2.14 3 1 OE1 A GLU 35 ? ? O . HOH 54 ? ? 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 201 ? ? CZ A ARG 201 ? ? NH2 A ARG 201 ? ? 116.89 120.30 -3.41 0.50 N 2 1 CB A ASP 225 ? ? CG A ASP 225 ? ? OD2 A ASP 225 ? ? 124.46 118.30 6.16 0.90 N 3 1 NE A ARG 288 ? ? CZ A ARG 288 ? ? NH1 A ARG 288 ? ? 123.41 120.30 3.11 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 40 ? ? -59.66 -0.11 2 1 ALA A 82 ? ? -139.00 -55.52 3 1 SER A 103 ? ? -128.46 -155.57 4 1 PRO A 109 ? ? -78.75 -114.64 5 1 THR A 111 ? ? -163.22 88.85 6 1 ASP A 113 ? ? 75.87 -64.10 7 1 CYS A 143 ? ? -168.65 102.59 8 1 THR A 244 ? ? -138.53 -33.36 9 1 THR A 256 ? ? -175.15 119.81 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 . NDP 901 ? PA ? D NDP 1 PA 2 1 N 1 . NDP 901 ? O1A ? D NDP 1 O1A 3 1 N 1 . NDP 901 ? O2A ? D NDP 1 O2A 4 1 N 1 . NDP 901 ? O5B ? D NDP 1 O5B 5 1 N 1 . NDP 901 ? C5B ? D NDP 1 C5B 6 1 N 1 . NDP 901 ? C4B ? D NDP 1 C4B 7 1 N 1 . NDP 901 ? O4B ? D NDP 1 O4B 8 1 N 1 . NDP 901 ? C3B ? D NDP 1 C3B 9 1 N 1 . NDP 901 ? O3B ? D NDP 1 O3B 10 1 N 1 . NDP 901 ? C2B ? D NDP 1 C2B 11 1 N 1 . NDP 901 ? O2B ? D NDP 1 O2B 12 1 N 1 . NDP 901 ? C1B ? D NDP 1 C1B 13 1 N 1 . NDP 901 ? N9A ? D NDP 1 N9A 14 1 N 1 . NDP 901 ? C8A ? D NDP 1 C8A 15 1 N 1 . NDP 901 ? N7A ? D NDP 1 N7A 16 1 N 1 . NDP 901 ? C5A ? D NDP 1 C5A 17 1 N 1 . NDP 901 ? C6A ? D NDP 1 C6A 18 1 N 1 . NDP 901 ? N6A ? D NDP 1 N6A 19 1 N 1 . NDP 901 ? N1A ? D NDP 1 N1A 20 1 N 1 . NDP 901 ? C2A ? D NDP 1 C2A 21 1 N 1 . NDP 901 ? N3A ? D NDP 1 N3A 22 1 N 1 . NDP 901 ? C4A ? D NDP 1 C4A 23 1 N 1 . NDP 901 ? PN ? D NDP 1 PN 24 1 N 1 . NDP 901 ? O1N ? D NDP 1 O1N 25 1 N 1 . NDP 901 ? O2N ? D NDP 1 O2N 26 1 N 1 . NDP 901 ? O5D ? D NDP 1 O5D 27 1 N 1 . NDP 901 ? C5D ? D NDP 1 C5D 28 1 N 1 . NDP 901 ? C4D ? D NDP 1 C4D 29 1 N 1 . NDP 901 ? O4D ? D NDP 1 O4D 30 1 N 1 . NDP 901 ? C3D ? D NDP 1 C3D 31 1 N 1 . NDP 901 ? O3D ? D NDP 1 O3D 32 1 N 1 . NDP 901 ? C2D ? D NDP 1 C2D 33 1 N 1 . NDP 901 ? O2D ? D NDP 1 O2D 34 1 N 1 . NDP 901 ? C1D ? D NDP 1 C1D 35 1 N 1 . NDP 901 ? N1N ? D NDP 1 N1N 36 1 N 1 . NDP 901 ? C2N ? D NDP 1 C2N 37 1 N 1 . NDP 901 ? C3N ? D NDP 1 C3N 38 1 N 1 . NDP 901 ? C7N ? D NDP 1 C7N 39 1 N 1 . NDP 901 ? O7N ? D NDP 1 O7N 40 1 N 1 . NDP 901 ? N7N ? D NDP 1 N7N 41 1 N 1 . NDP 901 ? C4N ? D NDP 1 C4N 42 1 N 1 . NDP 901 ? C5N ? D NDP 1 C5N 43 1 N 1 . NDP 901 ? C6N ? D NDP 1 C6N 44 1 N 1 . NDP 901 ? P2B ? D NDP 1 P2B 45 1 N 1 . NDP 901 ? O1X ? D NDP 1 O1X 46 1 N 1 . NDP 901 ? O2X ? D NDP 1 O2X 47 1 N 1 . NDP 901 ? O3X ? D NDP 1 O3X # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SULFATE ION' SO4 4 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NDP 5 water HOH #