data_1KCI # _entry.id 1KCI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KCI pdb_00001kci 10.2210/pdb1kci/pdb NDB DD0048 ? ? RCSB RCSB014810 ? ? WWPDB D_1000014810 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-02-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KCI _pdbx_database_status.recvd_initial_deposition_date 2001-11-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB DD0015 ;5'-d(CpGpTpApCpG)-3', 9-amino-[N-(2-dimethylamino)ethyl]acridine-4-carboxamide ; unspecified NDB DD0023 ;5'-d(CpGpTpApCpG)-3', 5-F-9-amino-[N-(2-dimethylamino)ethyl]acridine-4-carboxamide ; unspecified NDB DDF073 ;5'-d(CG5BrUACG)-3', 6Br-9-amino-[N-(2-dimethylamino)ethyl]acridine-4-carboxamide ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Adams, A.' 1 'Guss, J.M.' 2 'Denny, W.A.' 3 'Wakelin, L.P.G.' 4 # _citation.id primary _citation.title ;Crystal structure of 9-amino-N-[2-(4-morpholinyl)ethyl]-4-acridinecarboxamide bound to d(CGTACG)2: implications for structure-activity relationships of acridinecarboxamide topoisomerase poisons. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 30 _citation.page_first 719 _citation.page_last 725 _citation.year 2002 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11809884 _citation.pdbx_database_id_DOI 10.1093/nar/30.3.719 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Adams, A.' 1 ? primary 'Guss, J.M.' 2 ? primary 'Denny, W.A.' 3 ? primary 'Wakelin, L.P.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 1 ? ? ? ? 2 non-polymer syn '9-AMINO-N-[2-(4-MORPHOLINYL)ETHYL]-4-ACRIDINECARBOXAMIDE' 350.414 2 ? ? ? ? 3 water nat water 18.015 20 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '9-AMINO-N-[2-(4-MORPHOLINYL)ETHYL]-4-ACRIDINECARBOXAMIDE' DRC 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DRC non-polymer . '9-AMINO-N-[2-(4-MORPHOLINYL)ETHYL]-4-ACRIDINECARBOXAMIDE' ? 'C20 H22 N4 O2' 350.414 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1001 1001 DC C A . n A 1 2 DG 2 1002 1002 DG G A . n A 1 3 DT 3 1003 1003 DT T A . n A 1 4 DA 4 1004 1004 DA A A . n A 1 5 DC 5 1005 1005 DC C A . n A 1 6 DG 6 1006 1006 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DRC 1 3014 3014 DRC DRC A . C 2 DRC 1 3015 3015 DRC DRC A . D 3 HOH 1 4001 4001 HOH HOH A . D 3 HOH 2 4002 4002 HOH HOH A . D 3 HOH 3 4003 4003 HOH HOH A . D 3 HOH 4 4004 4004 HOH HOH A . D 3 HOH 5 4005 4005 HOH HOH A . D 3 HOH 6 4006 4006 HOH HOH A . D 3 HOH 7 4007 4007 HOH HOH A . D 3 HOH 8 4008 4008 HOH HOH A . D 3 HOH 9 4009 4009 HOH HOH A . D 3 HOH 10 4010 4010 HOH HOH A . D 3 HOH 11 4011 4011 HOH HOH A . D 3 HOH 12 4012 4012 HOH HOH A . D 3 HOH 13 4013 4013 HOH HOH A . D 3 HOH 14 4014 4014 HOH HOH A . D 3 HOH 15 4015 4015 HOH HOH A . D 3 HOH 16 4016 4016 HOH HOH A . D 3 HOH 17 4017 4017 HOH HOH A . D 3 HOH 18 4018 4018 HOH HOH A . D 3 HOH 19 4019 4019 HOH HOH A . D 3 HOH 20 4020 4020 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 1KCI _cell.length_a 30.239 _cell.length_b 30.239 _cell.length_c 39.340 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KCI _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 # _exptl.entry_id 1KCI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_percent_sol 55.25 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'cacodylate, spermine, KCl, MgCl2, MPD, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 285K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 cacodylate ? ? ? 1 2 1 spermine ? ? ? 1 3 1 KCl ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 1 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 2000-08-01 _diffrn_detector.details 'focusing mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1KCI _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40 _reflns.d_resolution_high 1.8 _reflns.number_obs 1951 _reflns.number_all 1951 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0940000 _reflns.pdbx_netI_over_sigmaI 21.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.7 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.3500000 _reflns_shell.meanI_over_sigI_obs 5.0 _reflns_shell.pdbx_redundancy 6.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 195 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1KCI _refine.ls_number_reflns_obs 1931 _refine.ls_number_reflns_all 1931 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 40 _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2190000 _refine.ls_R_factor_all 0.2190000 _refine.ls_R_factor_R_work 0.2150000 _refine.ls_R_factor_R_free 0.2910000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 143 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 28 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method Rfree _refine.details ? _refine.pdbx_starting_model 'NDB entry DD0015' _refine.pdbx_method_to_determine_struct ISOMORPHOUS _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'SHELX 2000 DNA dictioary' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 192 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 40 # _pdbx_refine.entry_id 1KCI _pdbx_refine.R_factor_all_no_cutoff 0.2190000 _pdbx_refine.R_factor_obs_no_cutoff 0.2150000 _pdbx_refine.free_R_factor_no_cutoff 0.2910000 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1KCI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1KCI _struct.title 'Crystal Structure of 9-amino-N-[2-(4-morpholinyl)ethyl]-4-acridinecarboxamide Bound to d(CGTACG)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KCI _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, intercalator, aminoacridinecarboxamide' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1KCI _struct_ref.pdbx_db_accession 1KCI _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KCI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1KCI _struct_ref_seq.db_align_beg 1001 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1006 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1001 _struct_ref_seq.pdbx_auth_seq_align_end 1006 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 30.2390000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DRC 3014 ? 11 'BINDING SITE FOR RESIDUE DRC A 3014' AC2 Software A DRC 3015 ? 6 'BINDING SITE FOR RESIDUE DRC A 3015' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DC A 1 ? DC A 1001 . ? 1_555 ? 2 AC1 11 DG A 2 ? DG A 1002 . ? 1_555 ? 3 AC1 11 DG A 2 ? DG A 1002 . ? 3_664 ? 4 AC1 11 DT A 3 ? DT A 1003 . ? 1_555 ? 5 AC1 11 DA A 4 ? DA A 1004 . ? 2_655 ? 6 AC1 11 DC A 5 ? DC A 1005 . ? 4_655 ? 7 AC1 11 DG A 6 ? DG A 1006 . ? 4_655 ? 8 AC1 11 DRC C . ? DRC A 3015 . ? 4_655 ? 9 AC1 11 HOH D . ? HOH A 4016 . ? 2_655 ? 10 AC1 11 HOH D . ? HOH A 4019 . ? 4_655 ? 11 AC1 11 HOH D . ? HOH A 4019 . ? 1_555 ? 12 AC2 6 DC A 1 ? DC A 1001 . ? 4_655 ? 13 AC2 6 DC A 1 ? DC A 1001 . ? 1_445 ? 14 AC2 6 DG A 6 ? DG A 1006 . ? 4_545 ? 15 AC2 6 DG A 6 ? DG A 1006 . ? 1_555 ? 16 AC2 6 DRC B . ? DRC A 3014 . ? 4_655 ? 17 AC2 6 HOH D . ? HOH A 4011 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 1.638 1.519 0.119 0.010 N 2 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 1.497 1.420 0.077 0.011 N 3 1 "O3'" A DC 1001 ? ? "C3'" A DC 1001 ? ? 1.365 1.419 -0.054 0.006 N 4 1 "O3'" A DC 1001 ? ? P A DG 1002 ? ? 1.720 1.607 0.113 0.012 Y 5 1 P A DG 1002 ? ? "O5'" A DG 1002 ? ? 1.668 1.593 0.075 0.010 N 6 1 "C2'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.645 1.519 0.126 0.010 N 7 1 "O3'" A DG 1002 ? ? "C3'" A DG 1002 ? ? 1.357 1.419 -0.062 0.006 N 8 1 "O3'" A DG 1002 ? ? P A DT 1003 ? ? 1.725 1.607 0.118 0.012 Y 9 1 P A DT 1003 ? ? "O5'" A DT 1003 ? ? 1.666 1.593 0.073 0.010 N 10 1 "C2'" A DT 1003 ? ? "C1'" A DT 1003 ? ? 1.661 1.519 0.142 0.010 N 11 1 "O3'" A DT 1003 ? ? "C3'" A DT 1003 ? ? 1.349 1.419 -0.070 0.006 N 12 1 "O3'" A DT 1003 ? ? P A DA 1004 ? ? 1.717 1.607 0.110 0.012 Y 13 1 P A DA 1004 ? ? "O5'" A DA 1004 ? ? 1.673 1.593 0.080 0.010 N 14 1 "C2'" A DA 1004 ? ? "C1'" A DA 1004 ? ? 1.641 1.519 0.122 0.010 N 15 1 "O3'" A DA 1004 ? ? "C3'" A DA 1004 ? ? 1.362 1.419 -0.057 0.006 N 16 1 "O3'" A DA 1004 ? ? P A DC 1005 ? ? 1.739 1.607 0.132 0.012 Y 17 1 P A DC 1005 ? ? "O5'" A DC 1005 ? ? 1.660 1.593 0.067 0.010 N 18 1 "C2'" A DC 1005 ? ? "C1'" A DC 1005 ? ? 1.659 1.519 0.140 0.010 N 19 1 "O3'" A DC 1005 ? ? "C3'" A DC 1005 ? ? 1.367 1.419 -0.052 0.006 N 20 1 "O3'" A DC 1005 ? ? P A DG 1006 ? ? 1.737 1.607 0.130 0.012 Y 21 1 P A DG 1006 ? ? "O5'" A DG 1006 ? ? 1.660 1.593 0.067 0.010 N 22 1 "C2'" A DG 1006 ? ? "C1'" A DG 1006 ? ? 1.647 1.519 0.128 0.010 N 23 1 "O3'" A DG 1006 ? ? "C3'" A DG 1006 ? ? 1.363 1.419 -0.056 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1001 ? ? "C5'" A DC 1001 ? ? "C4'" A DC 1001 ? ? 102.90 109.40 -6.50 0.80 N 2 1 "C5'" A DC 1001 ? ? "C4'" A DC 1001 ? ? "O4'" A DC 1001 ? ? 117.70 109.80 7.90 1.10 N 3 1 "C4'" A DC 1001 ? ? "C3'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 112.46 103.10 9.36 0.90 N 4 1 "C3'" A DC 1001 ? ? "C2'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 95.51 102.40 -6.89 0.80 N 5 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 111.57 106.80 4.77 0.50 N 6 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? N1 A DC 1001 ? ? 103.21 108.00 -4.79 0.70 N 7 1 "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? 99.45 109.40 -9.95 0.80 N 8 1 P A DG 1002 ? ? "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? 109.23 120.90 -11.67 1.60 N 9 1 "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? "O4'" A DG 1002 ? ? 119.12 109.80 9.32 1.10 N 10 1 "C4'" A DG 1002 ? ? "C3'" A DG 1002 ? ? "C2'" A DG 1002 ? ? 110.96 103.10 7.86 0.90 N 11 1 "C3'" A DG 1002 ? ? "C2'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 95.86 102.40 -6.54 0.80 N 12 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? "C2'" A DG 1002 ? ? 110.78 106.80 3.98 0.50 N 13 1 "O5'" A DT 1003 ? ? "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? ? 98.62 109.40 -10.78 0.80 N 14 1 P A DT 1003 ? ? "O5'" A DT 1003 ? ? "C5'" A DT 1003 ? ? 105.93 120.90 -14.97 1.60 N 15 1 "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? ? "O4'" A DT 1003 ? ? 116.85 109.80 7.05 1.10 N 16 1 "C4'" A DT 1003 ? ? "C3'" A DT 1003 ? ? "C2'" A DT 1003 ? ? 110.09 103.10 6.99 0.90 N 17 1 "C3'" A DT 1003 ? ? "C2'" A DT 1003 ? ? "C1'" A DT 1003 ? ? 91.21 102.40 -11.19 0.80 N 18 1 "O4'" A DT 1003 ? ? "C1'" A DT 1003 ? ? "C2'" A DT 1003 ? ? 109.93 106.80 3.13 0.50 N 19 1 "C3'" A DT 1003 ? ? "O3'" A DT 1003 ? ? P A DA 1004 ? ? 131.21 119.70 11.51 1.20 Y 20 1 "O5'" A DA 1004 ? ? "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? 99.86 109.40 -9.54 0.80 N 21 1 "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? "O4'" A DA 1004 ? ? 117.00 109.80 7.20 1.10 N 22 1 "C4'" A DA 1004 ? ? "C3'" A DA 1004 ? ? "C2'" A DA 1004 ? ? 111.17 103.10 8.07 0.90 N 23 1 "C3'" A DA 1004 ? ? "C2'" A DA 1004 ? ? "C1'" A DA 1004 ? ? 94.97 102.40 -7.43 0.80 N 24 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? "C2'" A DA 1004 ? ? 111.75 106.80 4.95 0.50 N 25 1 "O5'" A DC 1005 ? ? "C5'" A DC 1005 ? ? "C4'" A DC 1005 ? ? 100.75 109.40 -8.65 0.80 N 26 1 P A DC 1005 ? ? "O5'" A DC 1005 ? ? "C5'" A DC 1005 ? ? 110.65 120.90 -10.25 1.60 N 27 1 "C5'" A DC 1005 ? ? "C4'" A DC 1005 ? ? "O4'" A DC 1005 ? ? 117.24 109.80 7.44 1.10 N 28 1 "C4'" A DC 1005 ? ? "C3'" A DC 1005 ? ? "C2'" A DC 1005 ? ? 111.18 103.10 8.08 0.90 N 29 1 "C3'" A DC 1005 ? ? "C2'" A DC 1005 ? ? "C1'" A DC 1005 ? ? 92.58 102.40 -9.82 0.80 N 30 1 "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? "C4'" A DG 1006 ? ? 100.17 109.40 -9.23 0.80 N 31 1 P A DG 1006 ? ? "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? 105.46 120.90 -15.44 1.60 N 32 1 "C4'" A DG 1006 ? ? "C3'" A DG 1006 ? ? "C2'" A DG 1006 ? ? 110.44 103.10 7.34 0.90 N 33 1 "C3'" A DG 1006 ? ? "C2'" A DG 1006 ? ? "C1'" A DG 1006 ? ? 94.07 102.40 -8.33 0.80 N 34 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? "C2'" A DG 1006 ? ? 113.01 106.80 6.21 0.50 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 4009 ? D HOH . 2 1 A HOH 4019 ? D HOH . 3 1 A HOH 4020 ? D HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DRC O24 O N N 108 DRC C20 C N N 109 DRC C21 C N N 110 DRC C22 C N N 111 DRC C23 C N N 112 DRC N19 N N N 113 DRC C18 C N N 114 DRC C17 C N N 115 DRC N16 N N N 116 DRC C15 C N N 117 DRC O15 O N N 118 DRC N9 N N N 119 DRC C4 C Y N 120 DRC C3 C Y N 121 DRC C2 C Y N 122 DRC C1 C Y N 123 DRC C11 C Y N 124 DRC C12 C Y N 125 DRC C9 C Y N 126 DRC C13 C Y N 127 DRC C14 C Y N 128 DRC N10 N Y N 129 DRC C8 C Y N 130 DRC C7 C Y N 131 DRC C6 C Y N 132 DRC C5 C Y N 133 DRC H201 H N N 134 DRC H202 H N N 135 DRC H211 H N N 136 DRC H212 H N N 137 DRC H221 H N N 138 DRC H222 H N N 139 DRC H231 H N N 140 DRC H232 H N N 141 DRC H181 H N N 142 DRC H182 H N N 143 DRC H171 H N N 144 DRC H172 H N N 145 DRC H16 H N N 146 DRC HN91 H N N 147 DRC HN92 H N N 148 DRC HC3 H N N 149 DRC HC2 H N N 150 DRC HC1 H N N 151 DRC HC8 H N N 152 DRC HC7 H N N 153 DRC HC6 H N N 154 DRC HC5 H N N 155 DT OP3 O N N 156 DT P P N N 157 DT OP1 O N N 158 DT OP2 O N N 159 DT "O5'" O N N 160 DT "C5'" C N N 161 DT "C4'" C N R 162 DT "O4'" O N N 163 DT "C3'" C N S 164 DT "O3'" O N N 165 DT "C2'" C N N 166 DT "C1'" C N R 167 DT N1 N N N 168 DT C2 C N N 169 DT O2 O N N 170 DT N3 N N N 171 DT C4 C N N 172 DT O4 O N N 173 DT C5 C N N 174 DT C7 C N N 175 DT C6 C N N 176 DT HOP3 H N N 177 DT HOP2 H N N 178 DT "H5'" H N N 179 DT "H5''" H N N 180 DT "H4'" H N N 181 DT "H3'" H N N 182 DT "HO3'" H N N 183 DT "H2'" H N N 184 DT "H2''" H N N 185 DT "H1'" H N N 186 DT H3 H N N 187 DT H71 H N N 188 DT H72 H N N 189 DT H73 H N N 190 DT H6 H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DRC O24 C21 sing N N 113 DRC O24 C23 sing N N 114 DRC C20 C21 sing N N 115 DRC C20 N19 sing N N 116 DRC C20 H201 sing N N 117 DRC C20 H202 sing N N 118 DRC C21 H211 sing N N 119 DRC C21 H212 sing N N 120 DRC C22 C23 sing N N 121 DRC C22 N19 sing N N 122 DRC C22 H221 sing N N 123 DRC C22 H222 sing N N 124 DRC C23 H231 sing N N 125 DRC C23 H232 sing N N 126 DRC N19 C18 sing N N 127 DRC C18 C17 sing N N 128 DRC C18 H181 sing N N 129 DRC C18 H182 sing N N 130 DRC C17 N16 sing N N 131 DRC C17 H171 sing N N 132 DRC C17 H172 sing N N 133 DRC N16 C15 sing N N 134 DRC N16 H16 sing N N 135 DRC C15 O15 doub N N 136 DRC C15 C4 sing N N 137 DRC N9 C9 sing N N 138 DRC N9 HN91 sing N N 139 DRC N9 HN92 sing N N 140 DRC C4 C3 doub Y N 141 DRC C4 C12 sing Y N 142 DRC C3 C2 sing Y N 143 DRC C3 HC3 sing N N 144 DRC C2 C1 doub Y N 145 DRC C2 HC2 sing N N 146 DRC C1 C11 sing Y N 147 DRC C1 HC1 sing N N 148 DRC C11 C12 doub Y N 149 DRC C11 C9 sing Y N 150 DRC C12 N10 sing Y N 151 DRC C9 C13 doub Y N 152 DRC C13 C14 sing Y N 153 DRC C13 C8 sing Y N 154 DRC C14 N10 doub Y N 155 DRC C14 C5 sing Y N 156 DRC C8 C7 doub Y N 157 DRC C8 HC8 sing N N 158 DRC C7 C6 sing Y N 159 DRC C7 HC7 sing N N 160 DRC C6 C5 doub Y N 161 DRC C6 HC6 sing N N 162 DRC C5 HC5 sing N N 163 DT OP3 P sing N N 164 DT OP3 HOP3 sing N N 165 DT P OP1 doub N N 166 DT P OP2 sing N N 167 DT P "O5'" sing N N 168 DT OP2 HOP2 sing N N 169 DT "O5'" "C5'" sing N N 170 DT "C5'" "C4'" sing N N 171 DT "C5'" "H5'" sing N N 172 DT "C5'" "H5''" sing N N 173 DT "C4'" "O4'" sing N N 174 DT "C4'" "C3'" sing N N 175 DT "C4'" "H4'" sing N N 176 DT "O4'" "C1'" sing N N 177 DT "C3'" "O3'" sing N N 178 DT "C3'" "C2'" sing N N 179 DT "C3'" "H3'" sing N N 180 DT "O3'" "HO3'" sing N N 181 DT "C2'" "C1'" sing N N 182 DT "C2'" "H2'" sing N N 183 DT "C2'" "H2''" sing N N 184 DT "C1'" N1 sing N N 185 DT "C1'" "H1'" sing N N 186 DT N1 C2 sing N N 187 DT N1 C6 sing N N 188 DT C2 O2 doub N N 189 DT C2 N3 sing N N 190 DT N3 C4 sing N N 191 DT N3 H3 sing N N 192 DT C4 O4 doub N N 193 DT C4 C5 sing N N 194 DT C5 C7 sing N N 195 DT C5 C6 doub N N 196 DT C7 H71 sing N N 197 DT C7 H72 sing N N 198 DT C7 H73 sing N N 199 DT C6 H6 sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 # _ndb_struct_conf_na.entry_id 1KCI _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 4_655 -0.068 -0.125 0.020 2.482 -12.144 -2.502 1 A_DC1001:DG1006_A A 1001 ? A 1006 ? 19 1 1 A DG 2 1_555 A DC 5 4_655 -0.211 -0.102 -0.089 -6.840 -2.296 1.355 2 A_DG1002:DC1005_A A 1002 ? A 1005 ? 19 1 1 A DT 3 1_555 A DA 4 4_655 -0.043 -0.158 -0.027 2.803 -11.915 -3.608 3 A_DT1003:DA1004_A A 1003 ? A 1004 ? 20 1 1 A DA 4 1_555 A DT 3 4_655 0.043 -0.158 -0.027 -2.803 -11.915 -3.608 4 A_DA1004:DT1003_A A 1004 ? A 1003 ? 20 1 1 A DC 5 1_555 A DG 2 4_655 0.211 -0.102 -0.089 6.840 -2.296 1.355 5 A_DC1005:DG1002_A A 1005 ? A 1002 ? 19 1 1 A DG 6 1_555 A DC 1 4_655 0.068 -0.125 0.020 -2.482 -12.144 -2.502 6 A_DG1006:DC1001_A A 1006 ? A 1001 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 4_655 A DG 2 1_555 A DC 5 4_655 0.519 0.576 6.958 -0.791 3.380 24.718 -0.824 -1.705 6.953 7.847 1.836 24.957 1 AA_DC1001DG1002:DC1005DG1006_AA A 1001 ? A 1006 ? A 1002 ? A 1005 ? 1 A DG 2 1_555 A DC 5 4_655 A DT 3 1_555 A DA 4 4_655 -0.730 -0.071 3.091 -0.150 3.081 28.415 -0.804 1.446 3.070 6.253 0.304 28.579 2 AA_DG1002DT1003:DA1004DC1005_AA A 1002 ? A 1005 ? A 1003 ? A 1004 ? 1 A DT 3 1_555 A DA 4 4_655 A DA 4 1_555 A DT 3 4_655 0.000 1.714 3.352 0.000 -4.743 47.819 2.479 0.000 3.178 -5.835 0.000 48.040 3 AA_DT1003DA1004:DT1003DA1004_AA A 1003 ? A 1004 ? A 1004 ? A 1003 ? 1 A DA 4 1_555 A DT 3 4_655 A DC 5 1_555 A DG 2 4_655 0.730 -0.071 3.091 0.150 3.081 28.415 -0.804 -1.446 3.070 6.253 -0.304 28.579 4 AA_DA1004DC1005:DG1002DT1003_AA A 1004 ? A 1003 ? A 1005 ? A 1002 ? 1 A DC 5 1_555 A DG 2 4_655 A DG 6 1_555 A DC 1 4_655 -0.519 0.576 6.958 0.791 3.380 24.718 -0.824 1.705 6.953 7.847 -1.836 24.957 5 AA_DC1005DG1006:DC1001DG1002_AA A 1005 ? A 1002 ? A 1006 ? A 1001 ? # _pdbx_initial_refinement_model.accession_code 465D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'NDB entry DD0015' # _atom_sites.entry_id 1KCI _atom_sites.fract_transf_matrix[1][1] 0.033070 _atom_sites.fract_transf_matrix[1][2] 0.019093 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038186 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025419 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P # loop_