data_1KED # _entry.id 1KED # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1KED RCSB RCSB014864 WWPDB D_1000014864 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2005-06-07 _pdbx_database_PDB_obs_spr.pdb_id 1Z7J _pdbx_database_PDB_obs_spr.replace_pdb_id 1KED _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ROX 'Transthyretin (Also Called Prealbumin) Complex With Thyroxine (T4)' unspecified PDB 2PAB 'Structure of prealbumin: secondary, tertiary and quaternary interactions determined by Fourier refinement at 1.8 A' unspecified PDB 1TTA ;The x-ray crystal structure refinements of normal human transthyretin and the amyloidogenic Val-30-->Met variant to 1.7-A resolution ; unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1KED _pdbx_database_status.recvd_initial_deposition_date 2001-11-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Muziol, T.' 1 'Cody, V.' 2 'Luft, J.R.' 3 'Pangborn, W.' 4 'Wojtczak, A.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Complex of rat transthyretin with tetraiodothyroacetic acid refined at 2.1 and 1.8 A resolution' 'ACTA BIOCHIM.POL.' 48 877 884 2001 ABPLAF PL 0001-527X 1139 ? 11995998 ? 1 ;Structural Aspects of Inotropic Bipyridine Binding. Crystal Structure Determination to 1.9 A of the Human Serum Transthyretin-Milrinone Complex ; J.Biol.Chem. 268 6202 6206 1993 JBCHA3 US 0021-9258 0071 ? ? ? 2 ;Mechanism of Molecular Recognition. Structural Aspects of 3,3'-Diiodo-L-Thyronine Binding to Human Serum Transthyretin ; J.Biol.Chem. 267 353 357 1992 JBCHA3 US 0021-9258 0071 ? ? ? 3 ;Structures of Human Transthyretin Complexed with Thyroxine at 2.0 A Resolution and 3',5'-Dinitro-N-Acetyl-L-Thyronine at 2.2 A Resolution ; 'Acta Crystallogr., Sect.D' 52 758 765 1996 ABCRE6 DK 0907-4449 0766 ? ? 10.1107/S0907444996003046 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Muziol, T.' 1 primary 'Cody, V.' 2 primary 'Luft, J.R.' 3 primary 'Pangborn, W.' 4 primary 'Wojtczak, A.' 5 1 'Wojtczak, A.' 6 1 'Luft, J.R.' 7 1 'Cody, V.' 8 2 'Wojtczak, A.' 9 2 'Luft, J.' 10 2 'Cody, V.' 11 3 'Wojtczak, A.' 12 3 'Cody, V.' 13 3 'Luft, J.R.' 14 3 'Pangborn, W.' 15 # _cell.entry_id 1KED _cell.length_a 43.462 _cell.length_b 85.858 _cell.length_c 65.443 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KED _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat TRANSTHYRETIN 13777.360 2 ? ? ? ? 2 non-polymer syn ;3,3',5,5'-TETRAIODOTHYROACETIC ACID ; 747.829 2 ? ? ? ? 3 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Prealbumin, TBPA, TTR, ATTR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 THR n 1 4 GLY n 1 5 THR n 1 6 GLY n 1 7 GLU n 1 8 SER n 1 9 LYS n 1 10 CYS n 1 11 PRO n 1 12 LEU n 1 13 MET n 1 14 VAL n 1 15 LYS n 1 16 VAL n 1 17 LEU n 1 18 ASP n 1 19 ALA n 1 20 VAL n 1 21 ARG n 1 22 GLY n 1 23 SER n 1 24 PRO n 1 25 ALA n 1 26 ILE n 1 27 ASN n 1 28 VAL n 1 29 ALA n 1 30 VAL n 1 31 HIS n 1 32 VAL n 1 33 PHE n 1 34 ARG n 1 35 LYS n 1 36 ALA n 1 37 ALA n 1 38 ASP n 1 39 ASP n 1 40 THR n 1 41 TRP n 1 42 GLU n 1 43 PRO n 1 44 PHE n 1 45 ALA n 1 46 SER n 1 47 GLY n 1 48 LYS n 1 49 THR n 1 50 SER n 1 51 GLU n 1 52 SER n 1 53 GLY n 1 54 GLU n 1 55 LEU n 1 56 HIS n 1 57 GLY n 1 58 LEU n 1 59 THR n 1 60 THR n 1 61 GLU n 1 62 GLU n 1 63 GLU n 1 64 PHE n 1 65 VAL n 1 66 GLU n 1 67 GLY n 1 68 ILE n 1 69 TYR n 1 70 LYS n 1 71 VAL n 1 72 GLU n 1 73 ILE n 1 74 ASP n 1 75 THR n 1 76 LYS n 1 77 SER n 1 78 TYR n 1 79 TRP n 1 80 LYS n 1 81 ALA n 1 82 LEU n 1 83 GLY n 1 84 ILE n 1 85 SER n 1 86 PRO n 1 87 PHE n 1 88 HIS n 1 89 GLU n 1 90 HIS n 1 91 ALA n 1 92 GLU n 1 93 VAL n 1 94 VAL n 1 95 PHE n 1 96 THR n 1 97 ALA n 1 98 ASN n 1 99 ASP n 1 100 SER n 1 101 GLY n 1 102 PRO n 1 103 ARG n 1 104 ARG n 1 105 TYR n 1 106 THR n 1 107 ILE n 1 108 ALA n 1 109 ALA n 1 110 LEU n 1 111 LEU n 1 112 SER n 1 113 PRO n 1 114 TYR n 1 115 SER n 1 116 TYR n 1 117 SER n 1 118 THR n 1 119 THR n 1 120 ALA n 1 121 VAL n 1 122 VAL n 1 123 THR n 1 124 ASN n 1 125 PRO n 1 126 LYS n 1 127 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id ? _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue PLASMA _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name SWS _struct_ref.db_code TTHY_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTT EEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P02766 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1KED A 1 ? 127 ? P02766 21 ? 147 ? 1 127 2 1 1KED B 1 ? 127 ? P02766 21 ? 147 ? 201 327 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 T4A non-polymer . ;3,3',5,5'-TETRAIODOTHYROACETIC ACID ; ? 'C14 H8 I4 O4' 747.829 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1KED _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 41.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.50 _exptl_crystal_grow.pdbx_details ;48% ammonium sulfate, 0.1 M acetate buffer; A PROTEIN SOLUTION OF HTTR36 IN DDH2O WAS INCUBATED FOR 5 DAYS AT 4 DEG. WITH TH32 (T4AC). THE PROTEIN SOLUTION WAS USED IN HANGING DROP EXPERIMENTS SET UP ON 5/2/92. USING THE HANGING DROP TECHNIQUE 5 MICROLITER PROTEIN SOLUTION WAS COMBINED WITH 5 MICROLITER RESERVOIR SOLUTION ON SILANIZED GLASS COVERSLIPS AND PLACED OVER A RESERVOIR OF 48% AMMONIUM SULFATE, 0.1M ACETATE BUFFER, PH 5.5, SEALED WITH IMMERSION OIL. THE EXPERIMENT WAS LEFT AT ROOM TEMPERATURE TO EQUILIBRATE. A SINGLE CRYSTAL WAS HARVESTED AND MOUNTED IN A GLASS CAPILLARY. DATA COLLECTION BY DR. W. PANGBORN ON THE R-AXIS II AREA DETECTOR., pH 5.50, VAPOR DIFFUSION, HANGING DROP, temperature 293(1)K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 293.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1KED _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 43.461 _reflns.d_resolution_high 2.200 _reflns.number_obs 11346 _reflns.number_all 12525 _reflns.percent_possible_obs 94.5 _reflns.pdbx_Rmerge_I_obs 0.0587 _reflns.pdbx_Rsym_value 0. _reflns.pdbx_netI_over_av_sigmaI 15.2777 _reflns.B_iso_Wilson_estimate 23.3 _reflns.pdbx_redundancy 3.450 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.30 _reflns_shell.percent_possible_all 73.7 _reflns_shell.Rmerge_I_obs 0.061 _reflns_shell.pdbx_Rsym_value 0. _reflns_shell.meanI_over_sigI_obs 2.440 _reflns_shell.pdbx_redundancy 2.37 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1163 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1KED _refine.ls_number_reflns_obs 10228 _refine.ls_number_reflns_all 11346 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 3031648.54 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 14.87 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 78.9 _refine.ls_R_factor_obs 0.169 _refine.ls_R_factor_all 0.203 _refine.ls_R_factor_R_work 0.169 _refine.ls_R_factor_R_free 0.218 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.3 _refine.ls_number_reflns_R_free 953 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 32.5 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.313454 _refine.solvent_model_param_bsol 45.3323 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THIS COORDINATE SET COMPRISES TWO MONOMERS OF HUMAN TTR DIMER (CHAINS A AND B). MULTIPLE CONFORMATIONS HAVE BEEN FOUND FOR 13 RESIDUES. FOUR LIGAND MOLECULES HAVE BEEN FOUND (3,3',5,5'-TETRAIODOTHYROACETIC ACID) IN BOTH THE FORWARD AND THE REVERSE ORIENTATION. THERE ARE 81 WATER MOLECULES INCLUDED IN THE MODEL. RESIDUES A1-A9 AND A126-A127 OF THE FIRST MONOMER AND RESIDUES B201-B207 AND B326-B327 FROM THE SECOND ARE ILL-DEFINED IN THE ELECTRON DENSITY MAPS WEIGHTED ML MAPS AND HAVE BEEN OMITTED. ; _refine.pdbx_starting_model 'DIMER GENERATED FROM PDB ENTRY 2ROX STRUCTURE WITH ONLY PROTEIN ATOMS FROM RESIDUES 10-125 INCLUDED' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1KED _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.26 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1873 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 88 _refine_hist.number_atoms_solvent 243 _refine_hist.number_atoms_total 2204 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 14.87 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.73 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.52 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.55 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 7.55 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 6.37 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.30 _refine_ls_shell.number_reflns_R_work 832 _refine_ls_shell.R_factor_R_work 0.21 _refine_ls_shell.percent_reflns_obs 57.6 _refine_ls_shell.R_factor_R_free 0.293 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 8.8 _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.number_reflns_obs 919 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM LIG.TOP 'X-RAY DIFFRACTION' 3 LIG.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1KED _struct.title ;HUMAN TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3,3',5,5'-TETRAIODOTHYROACETIC ACID (T4AC) ; _struct.pdbx_descriptor TRANSTHYRETIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KED _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;ALBUMIN, TRANSPORT, RETINOL-BINDING, VITAMIN A, AMYLOID, THYROID HORMONE, LIVER, PLASMA, CEREBROSPINAL FLUID, POLYNEUROPATHY, POLYMORPHISM, DISEASE MUTATION, TETRAIODOTHYROACETIC ACID, T4AC, PREALBUMIN, TRANSPORT PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a tetramer generated from the dimer in the asymmetric unit by the operations 1-x, 1-y, z. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 74 ? ALA A 81 ? ASP A 74 ALA A 81 1 ? 8 HELX_P HELX_P2 2 ASP B 74 ? ALA B 81 ? ASP B 274 ALA B 281 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 12 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? parallel B 9 10 ? anti-parallel B 10 11 ? anti-parallel B 11 12 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP B 41 ? LYS B 48 ? TRP B 241 LYS B 248 A 2 ALA B 29 ? LYS B 35 ? ALA B 229 LYS B 235 A 3 GLY B 67 ? ILE B 73 ? GLY B 267 ILE B 273 A 4 HIS B 88 ? ALA B 97 ? HIS B 288 ALA B 297 A 5 HIS A 88 ? ALA A 97 ? HIS A 88 ALA A 97 A 6 GLY A 67 ? ILE A 73 ? GLY A 67 ILE A 73 A 7 ALA A 29 ? LYS A 35 ? ALA A 29 LYS A 35 A 8 TRP A 41 ? LYS A 48 ? TRP A 41 LYS A 48 B 1 GLU B 54 ? LEU B 55 ? GLU B 254 LEU B 255 B 2 LEU B 12 ? ASP B 18 ? LEU B 212 ASP B 218 B 3 SER B 23 ? PRO B 24 ? SER B 223 PRO B 224 B 4 LEU B 12 ? ASP B 18 ? LEU B 212 ASP B 218 B 5 ARG B 104 ? SER B 112 ? ARG B 304 SER B 312 B 6 SER B 115 ? THR B 123 ? SER B 315 THR B 323 B 7 SER A 115 ? THR A 123 ? SER A 115 THR A 123 B 8 ARG A 104 ? SER A 112 ? ARG A 104 SER A 112 B 9 LEU A 12 ? ASP A 18 ? LEU A 12 ASP A 18 B 10 SER A 23 ? PRO A 24 ? SER A 23 PRO A 24 B 11 LEU A 12 ? ASP A 18 ? LEU A 12 ASP A 18 B 12 GLU A 54 ? LEU A 55 ? GLU A 54 LEU A 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY B 47 ? O GLY B 247 N VAL B 30 ? N VAL B 230 A 2 3 N LYS B 35 ? N LYS B 235 O ILE B 68 ? O ILE B 268 A 3 4 N ILE B 73 ? N ILE B 273 O ALA B 91 ? O ALA B 291 A 4 5 O VAL B 94 ? O VAL B 294 N GLU A 89 ? N GLU A 89 A 5 6 N ALA A 97 ? N ALA A 97 O GLY A 67 ? O GLY A 67 A 6 7 N GLU A 72 ? N GLU A 72 O HIS A 31 ? O HIS A 31 A 7 8 O ARG A 34 ? O ARG A 34 N GLU A 42 ? N GLU A 42 B 1 2 N LEU B 55 ? N LEU B 255 O VAL B 14 ? O VAL B 214 B 2 3 N ASP B 18 ? N ASP B 218 O SER B 23 ? O SER B 223 B 3 4 O SER B 23 ? O SER B 223 N ASP B 18 ? N ASP B 218 B 4 5 N MET B 13 ? N MET B 213 O TYR B 105 ? O TYR B 305 B 5 6 N SER B 112 ? N SER B 312 O SER B 115 ? O SER B 315 B 6 7 N THR B 118 ? N THR B 318 O TYR A 116 ? O TYR A 116 B 7 8 O THR A 123 ? O THR A 123 N ARG A 104 ? N ARG A 104 B 8 9 O TYR A 105 ? O TYR A 105 N MET A 13 ? N MET A 13 B 9 10 N ASP A 18 ? N ASP A 18 O SER A 23 ? O SER A 23 B 10 11 O SER A 23 ? O SER A 23 N ASP A 18 ? N ASP A 18 B 11 12 O VAL A 14 ? O VAL A 14 N LEU A 55 ? N LEU A 55 # _database_PDB_matrix.entry_id 1KED _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KED _atom_sites.fract_transf_matrix[1][1] 0.023009 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011647 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015280 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 GLY 6 6 ? ? ? A . n A 1 7 GLU 7 7 ? ? ? A . n A 1 8 SER 8 8 ? ? ? A . n A 1 9 LYS 9 9 ? ? ? A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 LYS 126 126 ? ? ? A . n A 1 127 GLU 127 127 ? ? ? A . n B 1 1 GLY 1 201 ? ? ? B . n B 1 2 PRO 2 202 ? ? ? B . n B 1 3 THR 3 203 ? ? ? B . n B 1 4 GLY 4 204 ? ? ? B . n B 1 5 THR 5 205 ? ? ? B . n B 1 6 GLY 6 206 ? ? ? B . n B 1 7 GLU 7 207 ? ? ? B . n B 1 8 SER 8 208 208 SER SER B . n B 1 9 LYS 9 209 209 LYS LYS B . n B 1 10 CYS 10 210 210 CYS CYS B . n B 1 11 PRO 11 211 211 PRO PRO B . n B 1 12 LEU 12 212 212 LEU LEU B . n B 1 13 MET 13 213 213 MET MET B . n B 1 14 VAL 14 214 214 VAL VAL B . n B 1 15 LYS 15 215 215 LYS LYS B . n B 1 16 VAL 16 216 216 VAL VAL B . n B 1 17 LEU 17 217 217 LEU LEU B . n B 1 18 ASP 18 218 218 ASP ASP B . n B 1 19 ALA 19 219 219 ALA ALA B . n B 1 20 VAL 20 220 220 VAL VAL B . n B 1 21 ARG 21 221 221 ARG ARG B . n B 1 22 GLY 22 222 222 GLY GLY B . n B 1 23 SER 23 223 223 SER SER B . n B 1 24 PRO 24 224 224 PRO PRO B . n B 1 25 ALA 25 225 225 ALA ALA B . n B 1 26 ILE 26 226 226 ILE ILE B . n B 1 27 ASN 27 227 227 ASN ASN B . n B 1 28 VAL 28 228 228 VAL VAL B . n B 1 29 ALA 29 229 229 ALA ALA B . n B 1 30 VAL 30 230 230 VAL VAL B . n B 1 31 HIS 31 231 231 HIS HIS B . n B 1 32 VAL 32 232 232 VAL VAL B . n B 1 33 PHE 33 233 233 PHE PHE B . n B 1 34 ARG 34 234 234 ARG ARG B . n B 1 35 LYS 35 235 235 LYS LYS B . n B 1 36 ALA 36 236 236 ALA ALA B . n B 1 37 ALA 37 237 237 ALA ALA B . n B 1 38 ASP 38 238 238 ASP ASP B . n B 1 39 ASP 39 239 239 ASP ASP B . n B 1 40 THR 40 240 240 THR THR B . n B 1 41 TRP 41 241 241 TRP TRP B . n B 1 42 GLU 42 242 242 GLU GLU B . n B 1 43 PRO 43 243 243 PRO PRO B . n B 1 44 PHE 44 244 244 PHE PHE B . n B 1 45 ALA 45 245 245 ALA ALA B . n B 1 46 SER 46 246 246 SER SER B . n B 1 47 GLY 47 247 247 GLY GLY B . n B 1 48 LYS 48 248 248 LYS LYS B . n B 1 49 THR 49 249 249 THR THR B . n B 1 50 SER 50 250 250 SER SER B . n B 1 51 GLU 51 251 251 GLU GLU B . n B 1 52 SER 52 252 252 SER SER B . n B 1 53 GLY 53 253 253 GLY GLY B . n B 1 54 GLU 54 254 254 GLU GLU B . n B 1 55 LEU 55 255 255 LEU LEU B . n B 1 56 HIS 56 256 256 HIS HIS B . n B 1 57 GLY 57 257 257 GLY GLY B . n B 1 58 LEU 58 258 258 LEU LEU B . n B 1 59 THR 59 259 259 THR THR B . n B 1 60 THR 60 260 260 THR THR B . n B 1 61 GLU 61 261 261 GLU GLU B . n B 1 62 GLU 62 262 262 GLU GLU B . n B 1 63 GLU 63 263 263 GLU GLU B . n B 1 64 PHE 64 264 264 PHE PHE B . n B 1 65 VAL 65 265 265 VAL VAL B . n B 1 66 GLU 66 266 266 GLU GLU B . n B 1 67 GLY 67 267 267 GLY GLY B . n B 1 68 ILE 68 268 268 ILE ILE B . n B 1 69 TYR 69 269 269 TYR TYR B . n B 1 70 LYS 70 270 270 LYS LYS B . n B 1 71 VAL 71 271 271 VAL VAL B . n B 1 72 GLU 72 272 272 GLU GLU B . n B 1 73 ILE 73 273 273 ILE ILE B . n B 1 74 ASP 74 274 274 ASP ASP B . n B 1 75 THR 75 275 275 THR THR B . n B 1 76 LYS 76 276 276 LYS LYS B . n B 1 77 SER 77 277 277 SER SER B . n B 1 78 TYR 78 278 278 TYR TYR B . n B 1 79 TRP 79 279 279 TRP TRP B . n B 1 80 LYS 80 280 280 LYS LYS B . n B 1 81 ALA 81 281 281 ALA ALA B . n B 1 82 LEU 82 282 282 LEU LEU B . n B 1 83 GLY 83 283 283 GLY GLY B . n B 1 84 ILE 84 284 284 ILE ILE B . n B 1 85 SER 85 285 285 SER SER B . n B 1 86 PRO 86 286 286 PRO PRO B . n B 1 87 PHE 87 287 287 PHE PHE B . n B 1 88 HIS 88 288 288 HIS HIS B . n B 1 89 GLU 89 289 289 GLU GLU B . n B 1 90 HIS 90 290 290 HIS HIS B . n B 1 91 ALA 91 291 291 ALA ALA B . n B 1 92 GLU 92 292 292 GLU GLU B . n B 1 93 VAL 93 293 293 VAL VAL B . n B 1 94 VAL 94 294 294 VAL VAL B . n B 1 95 PHE 95 295 295 PHE PHE B . n B 1 96 THR 96 296 296 THR THR B . n B 1 97 ALA 97 297 297 ALA ALA B . n B 1 98 ASN 98 298 298 ASN ASN B . n B 1 99 ASP 99 299 299 ASP ASP B . n B 1 100 SER 100 300 300 SER SER B . n B 1 101 GLY 101 301 301 GLY GLY B . n B 1 102 PRO 102 302 302 PRO PRO B . n B 1 103 ARG 103 303 303 ARG ARG B . n B 1 104 ARG 104 304 304 ARG ARG B . n B 1 105 TYR 105 305 305 TYR TYR B . n B 1 106 THR 106 306 306 THR THR B . n B 1 107 ILE 107 307 307 ILE ILE B . n B 1 108 ALA 108 308 308 ALA ALA B . n B 1 109 ALA 109 309 309 ALA ALA B . n B 1 110 LEU 110 310 310 LEU LEU B . n B 1 111 LEU 111 311 311 LEU LEU B . n B 1 112 SER 112 312 312 SER SER B . n B 1 113 PRO 113 313 313 PRO PRO B . n B 1 114 TYR 114 314 314 TYR TYR B . n B 1 115 SER 115 315 315 SER SER B . n B 1 116 TYR 116 316 316 TYR TYR B . n B 1 117 SER 117 317 317 SER SER B . n B 1 118 THR 118 318 318 THR THR B . n B 1 119 THR 119 319 319 THR THR B . n B 1 120 ALA 120 320 320 ALA ALA B . n B 1 121 VAL 121 321 321 VAL VAL B . n B 1 122 VAL 122 322 322 VAL VAL B . n B 1 123 THR 123 323 323 THR THR B . n B 1 124 ASN 124 324 324 ASN ASN B . n B 1 125 PRO 125 325 325 PRO PRO B . n B 1 126 LYS 126 326 ? ? ? B . n B 1 127 GLU 127 327 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 T4A 1 128 128 T4A T4A ? . D 2 T4A 1 129 129 T4A T4A ? . E 3 HOH 1 850 850 HOH TIP ? . E 3 HOH 2 851 851 HOH TIP ? . E 3 HOH 3 852 852 HOH TIP ? . E 3 HOH 4 853 853 HOH TIP ? . E 3 HOH 5 854 854 HOH TIP ? . E 3 HOH 6 855 855 HOH TIP ? . E 3 HOH 7 856 856 HOH TIP ? . E 3 HOH 8 857 857 HOH TIP ? . E 3 HOH 9 858 858 HOH TIP ? . E 3 HOH 10 859 859 HOH TIP ? . E 3 HOH 11 860 860 HOH TIP ? . E 3 HOH 12 861 861 HOH TIP ? . E 3 HOH 13 862 862 HOH TIP ? . E 3 HOH 14 863 863 HOH TIP ? . E 3 HOH 15 864 864 HOH TIP ? . E 3 HOH 16 865 865 HOH TIP ? . E 3 HOH 17 866 866 HOH TIP ? . E 3 HOH 18 867 867 HOH TIP ? . E 3 HOH 19 868 868 HOH TIP ? . E 3 HOH 20 869 869 HOH TIP ? . E 3 HOH 21 870 870 HOH TIP ? . E 3 HOH 22 871 871 HOH TIP ? . E 3 HOH 23 872 872 HOH TIP ? . E 3 HOH 24 873 873 HOH TIP ? . E 3 HOH 25 874 874 HOH TIP ? . E 3 HOH 26 875 875 HOH TIP ? . E 3 HOH 27 876 876 HOH TIP ? . E 3 HOH 28 877 877 HOH TIP ? . E 3 HOH 29 878 878 HOH TIP ? . E 3 HOH 30 879 879 HOH TIP ? . E 3 HOH 31 880 880 HOH TIP ? . E 3 HOH 32 881 881 HOH TIP ? . E 3 HOH 33 882 882 HOH TIP ? . E 3 HOH 34 883 883 HOH TIP ? . E 3 HOH 35 884 884 HOH TIP ? . E 3 HOH 36 886 886 HOH TIP ? . E 3 HOH 37 887 887 HOH TIP ? . E 3 HOH 38 888 888 HOH TIP ? . E 3 HOH 39 890 890 HOH TIP ? . E 3 HOH 40 891 891 HOH TIP ? . E 3 HOH 41 894 894 HOH TIP ? . E 3 HOH 42 895 895 HOH TIP ? . E 3 HOH 43 896 896 HOH TIP ? . E 3 HOH 44 898 898 HOH TIP ? . E 3 HOH 45 899 899 HOH TIP ? . E 3 HOH 46 900 900 HOH TIP ? . E 3 HOH 47 901 901 HOH TIP ? . E 3 HOH 48 902 902 HOH TIP ? . E 3 HOH 49 904 904 HOH TIP ? . E 3 HOH 50 905 905 HOH TIP ? . E 3 HOH 51 906 906 HOH TIP ? . E 3 HOH 52 907 907 HOH TIP ? . E 3 HOH 53 908 908 HOH TIP ? . E 3 HOH 54 909 909 HOH TIP ? . E 3 HOH 55 910 910 HOH TIP ? . E 3 HOH 56 917 917 HOH TIP ? . E 3 HOH 57 918 918 HOH TIP ? . E 3 HOH 58 919 919 HOH TIP ? . E 3 HOH 59 922 922 HOH TIP ? . E 3 HOH 60 924 924 HOH TIP ? . E 3 HOH 61 934 934 HOH TIP ? . E 3 HOH 62 935 935 HOH TIP ? . E 3 HOH 63 936 936 HOH TIP ? . E 3 HOH 64 937 937 HOH TIP ? . E 3 HOH 65 938 938 HOH TIP ? . E 3 HOH 66 939 939 HOH TIP ? . E 3 HOH 67 940 940 HOH TIP ? . E 3 HOH 68 941 941 HOH TIP ? . E 3 HOH 69 942 942 HOH TIP ? . E 3 HOH 70 944 944 HOH TIP ? . E 3 HOH 71 945 945 HOH TIP ? . E 3 HOH 72 946 946 HOH TIP ? . E 3 HOH 73 947 947 HOH TIP ? . E 3 HOH 74 950 950 HOH TIP ? . E 3 HOH 75 951 951 HOH TIP ? . E 3 HOH 76 952 952 HOH TIP ? . E 3 HOH 77 953 953 HOH TIP ? . E 3 HOH 78 954 954 HOH TIP ? . E 3 HOH 79 955 955 HOH TIP ? . E 3 HOH 80 957 957 HOH TIP ? . E 3 HOH 81 958 958 HOH TIP ? . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-11-15 2 'Structure model' 1 1 2005-06-07 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal R-AXIS 'data collection' . ? 1 SCALEPACK 'data reduction' . ? 2 CNS 'model building' 1.1 ? 3 CNS refinement 1.1 ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 39 ? ? 71.10 37.50 2 1 ALA A 81 ? ? -66.44 0.57 3 1 HIS A 90 ? ? -171.77 -175.61 4 1 PHE B 244 ? ? -130.75 -45.12 5 1 SER B 300 ? ? -27.65 -39.81 6 1 PRO B 302 ? ? -34.28 125.47 7 1 ARG B 303 ? ? -108.20 -77.51 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A GLY 6 ? A GLY 6 7 1 Y 1 A GLU 7 ? A GLU 7 8 1 Y 1 A SER 8 ? A SER 8 9 1 Y 1 A LYS 9 ? A LYS 9 10 1 Y 1 A LYS 126 ? A LYS 126 11 1 Y 1 A GLU 127 ? A GLU 127 12 1 Y 1 B GLY 201 ? B GLY 1 13 1 Y 1 B PRO 202 ? B PRO 2 14 1 Y 1 B THR 203 ? B THR 3 15 1 Y 1 B GLY 204 ? B GLY 4 16 1 Y 1 B THR 205 ? B THR 5 17 1 Y 1 B GLY 206 ? B GLY 6 18 1 Y 1 B GLU 207 ? B GLU 7 19 1 Y 1 B LYS 326 ? B LYS 126 20 1 Y 1 B GLU 327 ? B GLU 127 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;3,3',5,5'-TETRAIODOTHYROACETIC ACID ; T4A 3 water HOH #