HEADER PROTEIN BINDING 15-NOV-01 1KEF TITLE PDZ1 OF SAP90 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPSE ASSOCIATED PROTEIN-90; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ1 DOMAIN; COMPND 5 SYNONYM: (SAP90), PRESYNAPTIC DENSITY PROTEIN 95, PSD-95; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-SHEET, ANTI-PARALLEL BETA-SANDWICH, GLGF LOOP, PROTEIN BINDING EXPDTA SOLUTION NMR AUTHOR A.PISERCHIO,M.PELLEGRINI,S.MEHTA,S.M.BLACKMAN,E.P.GARCIA,J.MARSHALL, AUTHOR 2 D.F.MIERKE REVDAT 3 23-FEB-22 1KEF 1 REMARK REVDAT 2 24-FEB-09 1KEF 1 VERSN REVDAT 1 06-MAR-02 1KEF 0 JRNL AUTH A.PISERCHIO,M.PELLEGRINI,S.MEHTA,S.M.BLACKMAN,E.P.GARCIA, JRNL AUTH 2 J.MARSHALL,D.F.MIERKE JRNL TITL THE PDZ1 DOMAIN OF SAP90. CHARACTERIZATION OF STRUCTURE AND JRNL TITL 2 BINDING. JRNL REF J.BIOL.CHEM. V. 277 6967 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11744724 JRNL DOI 10.1074/JBC.M109453200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 3.0, X-PLOR CNS REMARK 3 AUTHORS : DELAGLIO F. (NMRPIPE), BRUENGER, A. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1000014866. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM PROTEIN, 10 MM PHOSPHATE REMARK 210 BUFFER, 150 MM NACL, PH 6.8 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING WITH TORSION REMARK 210 ANGLE RESTRAINTS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGE STRUCTURE FROM ENSEMBLE REMARK 210 OF 28 STRUCTURES, CHOSEN BY REMARK 210 ENERGY AND PENALTY FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 69 CG HIS A 69 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 HIS A 26 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 HIS A 69 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 -139.58 70.21 REMARK 500 LEU A 14 -72.19 -121.55 REMARK 500 ASP A 23 -53.94 -123.65 REMARK 500 PRO A 25 90.98 -60.31 REMARK 500 ASP A 29 -62.24 -158.97 REMARK 500 THR A 36 -72.05 -103.43 REMARK 500 ALA A 43 -43.92 175.95 REMARK 500 ARG A 49 -35.34 -144.07 REMARK 500 PHE A 58 73.76 -162.92 REMARK 500 ASN A 60 -144.17 66.57 REMARK 500 GLU A 61 59.50 -94.68 REMARK 500 ARG A 65 -49.67 -179.15 REMARK 500 LYS A 91 -63.97 -148.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 1KEF A 1 93 UNP P78352 DLG4_HUMAN 105 197 SEQRES 1 A 93 GLU TYR GLU GLU ILE THR LEU GLU ARG GLY ASN SER GLY SEQRES 2 A 93 LEU GLY PHE SER ILE ALA GLY GLY THR ASP ASN PRO HIS SEQRES 3 A 93 ILE GLY ASP ASP PRO SER ILE PHE ILE THR LYS ILE ILE SEQRES 4 A 93 PRO GLY GLY ALA ALA ALA GLN ASP GLY ARG LEU ARG VAL SEQRES 5 A 93 ASN ASP SER ILE LEU PHE VAL ASN GLU VAL ASP VAL ARG SEQRES 6 A 93 GLU VAL THR HIS SER ALA ALA VAL GLU ALA LEU LYS GLU SEQRES 7 A 93 ALA GLY SER ILE VAL ARG LEU TYR VAL MET ARG ARG LYS SEQRES 8 A 93 PRO PRO HELIX 1 1 ALA A 43 GLY A 48 1 6 HELIX 2 2 THR A 68 GLY A 80 1 13 SHEET 1 A 2 GLU A 3 LEU A 7 0 SHEET 2 A 2 VAL A 83 VAL A 87 -1 O VAL A 83 N LEU A 7 SHEET 1 B 3 PHE A 16 ALA A 19 0 SHEET 2 B 3 ILE A 33 ILE A 38 -1 O THR A 36 N SER A 17 SHEET 3 B 3 SER A 55 ILE A 56 -1 O ILE A 56 N ILE A 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000