HEADER HYDROLASE/DNA 23-NOV-01 1KFV TITLE CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS FORMAMIDO-PYRIMIDINE DNA TITLE 2 GLYCOSYLASE (ALIAS FPG OR MUTM) NON COVALENTLY BOUND TO AN AP SITE TITLE 3 CONTAINING DNA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3'; COMPND 3 CHAIN: D, G; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CONTAINS A 1,3 PROPANEDIOL SITE (PDI); COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3'; COMPND 8 CHAIN: E, H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: FORMAMIDO-PYRIMIDINE DNA GLYCOSYLASE; COMPND 12 CHAIN: A, B; COMPND 13 SYNONYM: FAPY-DNA GLYCOSYLASE, FPG, MUTM; COMPND 14 EC: 3.2.2.23; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 7 ORGANISM_TAXID: 1358; SOURCE 8 GENE: MUTM OR FPG; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMAL-C KEYWDS DNA REPAIR ENZYME, ABASIC SITE, DNA, N-GLYCOSYLASE, AP LYASE, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.SERRE,K.PEREIRA DE JESUS,S.BOITEUX,C.ZELWER,B.CASTAING REVDAT 7 30-OCT-24 1KFV 1 REMARK REVDAT 6 15-NOV-23 1KFV 1 REMARK REVDAT 5 16-AUG-23 1KFV 1 REMARK REVDAT 4 27-OCT-21 1KFV 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1KFV 1 VERSN REVDAT 2 24-FEB-09 1KFV 1 VERSN REVDAT 1 14-JUN-02 1KFV 0 JRNL AUTH L.SERRE,K.PEREIRA DE JESUS,S.BOITEUX,C.ZELWER,B.CASTAING JRNL TITL CRYSTAL STRUCTURE OF THE LACTOCOCCUS LACTIS JRNL TITL 2 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE BOUND TO AN ABASIC SITE JRNL TITL 3 ANALOGUE-CONTAINING DNA. JRNL REF EMBO J. V. 21 2854 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12065399 JRNL DOI 10.1093/EMBOJ/CDF304 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2166 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 43 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 385 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 46 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4210 REMARK 3 NUCLEIC ACID ATOMS : 1026 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NCS RESTRAINTS HAVE BEEN CONSIDERED REMARK 3 DURING REFINEMENT. THERE ARE TWO POSSIBLE POSITIONS FOR THE ZN REMARK 3 ATOM IN MOLECULE B (SEE AZN AND BZN). REMARK 4 REMARK 4 1KFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1000014912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : SI (111) CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21897 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : 0.20900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 COMBINED WITH MAD REMARK 200 SOFTWARE USED: SNB, SOLVE, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EE8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4K, LISO4, TCEP, TRIS-HCL, REMARK 280 SPERMIDINE, PH 7.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.01500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 220 REMARK 465 THR A 221 REMARK 465 TYR A 222 REMARK 465 SER A 223 REMARK 465 ALA A 224 REMARK 465 LEU A 225 REMARK 465 GLY A 226 REMARK 465 SER B 218 REMARK 465 ILE B 219 REMARK 465 ARG B 220 REMARK 465 THR B 221 REMARK 465 TYR B 222 REMARK 465 SER B 223 REMARK 465 ALA B 224 REMARK 465 LEU B 225 REMARK 465 GLY B 226 REMARK 465 SER B 227 REMARK 465 THR B 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLN A 270 CG CD OE1 NE2 REMARK 470 LYS A 271 CB CG CD CE NZ REMARK 470 ARG B 88 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 271 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 236 CB SER B 246 2.15 REMARK 500 NH2 ARG A 260 O HOH A 322 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 97 CG - CD - CE ANGL. DEV. = -19.4 DEGREES REMARK 500 LYS B 97 CD - CE - NZ ANGL. DEV. = 21.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 31.78 -87.10 REMARK 500 ARG A 16 -12.41 -149.16 REMARK 500 SER A 24 171.20 177.05 REMARK 500 ARG A 74 -131.57 44.89 REMARK 500 GLU A 76 26.03 -151.68 REMARK 500 ASP A 107 90.72 -171.05 REMARK 500 THR A 119 -35.31 -36.40 REMARK 500 THR A 228 57.15 31.62 REMARK 500 VAL A 237 -23.67 -144.13 REMARK 500 ARG A 247 -65.16 -101.99 REMARK 500 GLN A 270 -77.60 -65.12 REMARK 500 GLU B 14 -67.35 -25.02 REMARK 500 ARG B 16 -16.77 -179.95 REMARK 500 GLN B 20 161.81 -44.74 REMARK 500 ASP B 65 31.17 -61.57 REMARK 500 ARG B 74 -131.17 44.69 REMARK 500 GLU B 76 24.88 -151.35 REMARK 500 ASP B 107 108.00 -169.02 REMARK 500 ASP B 107 -97.05 -129.71 REMARK 500 VAL B 108 -59.79 138.66 REMARK 500 ASP B 120 4.42 -62.43 REMARK 500 VAL B 122 -71.86 -56.27 REMARK 500 VAL B 237 -23.95 -143.39 REMARK 500 ARG B 247 -71.85 -101.37 REMARK 500 GLN B 270 -88.84 -61.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 245 SG REMARK 620 2 CYS A 248 SG 111.3 REMARK 620 3 CYS A 265 SG 109.1 87.9 REMARK 620 4 CYS A 268 SG 103.5 119.4 125.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 245 SG REMARK 620 2 CYS B 248 SG 111.9 REMARK 620 3 CYS B 265 SG 116.0 87.6 REMARK 620 4 CYS B 268 SG 102.9 113.7 124.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 245 SG REMARK 620 2 CYS B 268 SG 99.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EE8 RELATED DB: PDB REMARK 900 1EE8 IS THERMUS THERMOPHILUS MUTM (FPG) DBREF 1KFV A 1 271 UNP P42371 FPG_LACLC 2 273 DBREF 1KFV B 1 271 UNP P42371 FPG_LACLC 2 273 DBREF 1KFV D 1 13 PDB 1KFV 1KFV 1 13 DBREF 1KFV E 14 26 PDB 1KFV 1KFV 14 26 DBREF 1KFV G 1 13 PDB 1KFV 1KFV 1 13 DBREF 1KFV H 14 26 PDB 1KFV 1KFV 14 26 SEQADV 1KFV GLY A 1 UNP P42371 PRO 2 ENGINEERED MUTATION SEQADV 1KFV MSE A 32 UNP P42371 MET 33 MODIFIED RESIDUE SEQADV 1KFV MSE A 75 UNP P42371 MET 76 MODIFIED RESIDUE SEQADV 1KFV MSE A 96 UNP P42371 MET 97 MODIFIED RESIDUE SEQADV 1KFV A UNP P42371 ASP 139 SEE REMARK 999 SEQADV 1KFV MSE A 231 UNP P42371 MET 233 MODIFIED RESIDUE SEQADV 1KFV GLY B 1 UNP P42371 PRO 2 ENGINEERED MUTATION SEQADV 1KFV MSE B 32 UNP P42371 MET 33 MODIFIED RESIDUE SEQADV 1KFV MSE B 75 UNP P42371 MET 76 MODIFIED RESIDUE SEQADV 1KFV MSE B 96 UNP P42371 MET 97 MODIFIED RESIDUE SEQADV 1KFV B UNP P42371 ASP 139 SEE REMARK 999 SEQADV 1KFV MSE B 231 UNP P42371 MET 233 MODIFIED RESIDUE SEQRES 1 D 13 DC DT DC DT DT DT PDI DT DT DT DC DT DC SEQRES 1 E 13 DG DA DG DA DA DA DC DA DA DA DG DA DG SEQRES 1 G 13 DC DT DC DT DT DT PDI DT DT DT DC DT DC SEQRES 1 H 13 DG DA DG DA DA DA DC DA DA DA DG DA DG SEQRES 1 A 271 GLY GLU LEU PRO GLU VAL GLU THR VAL ARG ARG GLU LEU SEQRES 2 A 271 GLU LYS ARG ILE VAL GLY GLN LYS ILE ILE SER ILE GLU SEQRES 3 A 271 ALA THR TYR PRO ARG MSE VAL LEU THR GLY PHE GLU GLN SEQRES 4 A 271 LEU LYS LYS GLU LEU THR GLY LYS THR ILE GLN GLY ILE SEQRES 5 A 271 SER ARG ARG GLY LYS TYR LEU ILE PHE GLU ILE GLY ASP SEQRES 6 A 271 ASP PHE ARG LEU ILE SER HIS LEU ARG MSE GLU GLY LYS SEQRES 7 A 271 TYR ARG LEU ALA THR LEU ASP ALA PRO ARG GLU LYS HIS SEQRES 8 A 271 ASP HIS LEU THR MSE LYS PHE ALA ASP GLY GLN LEU ILE SEQRES 9 A 271 TYR ALA ASP VAL ARG LYS PHE GLY THR TRP GLU LEU ILE SEQRES 10 A 271 SER THR ASP GLN VAL LEU PRO TYR PHE LEU LYS LYS LYS SEQRES 11 A 271 ILE GLY PRO GLU PRO THR TYR GLU ASP PHE ASP GLU LYS SEQRES 12 A 271 LEU PHE ARG GLU LYS LEU ARG LYS SER THR LYS LYS ILE SEQRES 13 A 271 LYS PRO TYR LEU LEU GLU GLN THR LEU VAL ALA GLY LEU SEQRES 14 A 271 GLY ASN ILE TYR VAL ASP GLU VAL LEU TRP LEU ALA LYS SEQRES 15 A 271 ILE HIS PRO GLU LYS GLU THR ASN GLN LEU ILE GLU SER SEQRES 16 A 271 SER ILE HIS LEU LEU HIS ASP SER ILE ILE GLU ILE LEU SEQRES 17 A 271 GLN LYS ALA ILE LYS LEU GLY GLY SER SER ILE ARG THR SEQRES 18 A 271 TYR SER ALA LEU GLY SER THR GLY LYS MSE GLN ASN GLU SEQRES 19 A 271 LEU GLN VAL TYR GLY LYS THR GLY GLU LYS CYS SER ARG SEQRES 20 A 271 CYS GLY ALA GLU ILE GLN LYS ILE LYS VAL ALA GLY ARG SEQRES 21 A 271 GLY THR HIS PHE CYS PRO VAL CYS GLN GLN LYS SEQRES 1 B 271 GLY GLU LEU PRO GLU VAL GLU THR VAL ARG ARG GLU LEU SEQRES 2 B 271 GLU LYS ARG ILE VAL GLY GLN LYS ILE ILE SER ILE GLU SEQRES 3 B 271 ALA THR TYR PRO ARG MSE VAL LEU THR GLY PHE GLU GLN SEQRES 4 B 271 LEU LYS LYS GLU LEU THR GLY LYS THR ILE GLN GLY ILE SEQRES 5 B 271 SER ARG ARG GLY LYS TYR LEU ILE PHE GLU ILE GLY ASP SEQRES 6 B 271 ASP PHE ARG LEU ILE SER HIS LEU ARG MSE GLU GLY LYS SEQRES 7 B 271 TYR ARG LEU ALA THR LEU ASP ALA PRO ARG GLU LYS HIS SEQRES 8 B 271 ASP HIS LEU THR MSE LYS PHE ALA ASP GLY GLN LEU ILE SEQRES 9 B 271 TYR ALA ASP VAL ARG LYS PHE GLY THR TRP GLU LEU ILE SEQRES 10 B 271 SER THR ASP GLN VAL LEU PRO TYR PHE LEU LYS LYS LYS SEQRES 11 B 271 ILE GLY PRO GLU PRO THR TYR GLU ASP PHE ASP GLU LYS SEQRES 12 B 271 LEU PHE ARG GLU LYS LEU ARG LYS SER THR LYS LYS ILE SEQRES 13 B 271 LYS PRO TYR LEU LEU GLU GLN THR LEU VAL ALA GLY LEU SEQRES 14 B 271 GLY ASN ILE TYR VAL ASP GLU VAL LEU TRP LEU ALA LYS SEQRES 15 B 271 ILE HIS PRO GLU LYS GLU THR ASN GLN LEU ILE GLU SER SEQRES 16 B 271 SER ILE HIS LEU LEU HIS ASP SER ILE ILE GLU ILE LEU SEQRES 17 B 271 GLN LYS ALA ILE LYS LEU GLY GLY SER SER ILE ARG THR SEQRES 18 B 271 TYR SER ALA LEU GLY SER THR GLY LYS MSE GLN ASN GLU SEQRES 19 B 271 LEU GLN VAL TYR GLY LYS THR GLY GLU LYS CYS SER ARG SEQRES 20 B 271 CYS GLY ALA GLU ILE GLN LYS ILE LYS VAL ALA GLY ARG SEQRES 21 B 271 GLY THR HIS PHE CYS PRO VAL CYS GLN GLN LYS MODRES 1KFV MSE A 32 MET SELENOMETHIONINE MODRES 1KFV MSE A 75 MET SELENOMETHIONINE MODRES 1KFV MSE A 96 MET SELENOMETHIONINE MODRES 1KFV MSE A 231 MET SELENOMETHIONINE MODRES 1KFV MSE B 32 MET SELENOMETHIONINE MODRES 1KFV MSE B 75 MET SELENOMETHIONINE MODRES 1KFV MSE B 96 MET SELENOMETHIONINE MODRES 1KFV MSE B 231 MET SELENOMETHIONINE HET PDI D 7 8 HET PDI G 7 8 HET MSE A 32 8 HET MSE A 75 8 HET MSE A 96 8 HET MSE A 231 8 HET MSE B 32 8 HET MSE B 75 8 HET MSE B 96 16 HET MSE B 231 8 HET ZN A 300 1 HET GOL A 301 6 HET ZN B 301 2 HET GOL B 302 6 HETNAM PDI PHOSPHORIC ACID MONO-(3-HYDROXY-PROPYL) ESTER HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PDI 2(C3 H9 O5 P) FORMUL 5 MSE 8(C5 H11 N O2 SE) FORMUL 7 ZN 2(ZN 2+) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 11 HOH *54(H2 O) HELIX 1 1 GLU A 2 VAL A 18 1 17 HELIX 2 2 TYR A 29 VAL A 33 5 5 HELIX 3 3 GLY A 36 THR A 45 1 10 HELIX 4 4 GLN A 121 LYS A 129 1 9 HELIX 5 5 ASP A 141 LYS A 151 1 11 HELIX 6 6 LYS A 155 GLU A 162 1 8 HELIX 7 7 GLY A 170 ALA A 181 1 12 HELIX 8 8 GLU A 188 LEU A 192 5 5 HELIX 9 9 ILE A 193 LEU A 214 1 22 HELIX 10 10 LYS A 230 LEU A 235 5 6 HELIX 11 11 GLU B 2 VAL B 18 1 17 HELIX 12 12 TYR B 29 VAL B 33 5 5 HELIX 13 13 GLY B 36 THR B 45 1 10 HELIX 14 14 GLN B 121 LYS B 129 1 9 HELIX 15 15 ASP B 141 LYS B 151 1 11 HELIX 16 16 LYS B 155 GLU B 162 1 8 HELIX 17 17 GLY B 170 ALA B 181 1 12 HELIX 18 18 GLU B 188 LEU B 192 5 5 HELIX 19 19 ILE B 193 LEU B 214 1 22 HELIX 20 20 LYS B 230 LEU B 235 5 6 SHEET 1 A 4 ILE A 22 ALA A 27 0 SHEET 2 A 4 ASP A 92 PHE A 98 -1 O LYS A 97 N SER A 24 SHEET 3 A 4 GLN A 102 ALA A 106 -1 O LEU A 103 N MSE A 96 SHEET 4 A 4 LYS A 78 ALA A 82 -1 N LYS A 78 O ALA A 106 SHEET 1 B 4 ILE A 49 ARG A 55 0 SHEET 2 B 4 TYR A 58 ILE A 63 -1 O GLU A 62 N GLY A 51 SHEET 3 B 4 PHE A 67 HIS A 72 -1 O SER A 71 N LEU A 59 SHEET 4 B 4 THR A 113 SER A 118 -1 O ILE A 117 N ARG A 68 SHEET 1 C 2 GLN A 253 VAL A 257 0 SHEET 2 C 2 ARG A 260 PHE A 264 -1 O THR A 262 N ILE A 255 SHEET 1 D 5 LYS B 21 ILE B 22 0 SHEET 2 D 5 LYS B 47 ARG B 55 -1 O LYS B 47 N ILE B 22 SHEET 3 D 5 TYR B 58 ILE B 63 -1 O GLU B 62 N GLY B 51 SHEET 4 D 5 PHE B 67 HIS B 72 -1 O SER B 71 N LEU B 59 SHEET 5 D 5 THR B 113 SER B 118 -1 O ILE B 117 N ARG B 68 SHEET 1 E 4 SER B 24 ALA B 27 0 SHEET 2 E 4 ASP B 92 LYS B 97 -1 O THR B 95 N GLU B 26 SHEET 3 E 4 GLN B 102 ALA B 106 -1 O TYR B 105 N LEU B 94 SHEET 4 E 4 LYS B 78 ALA B 82 -1 N LYS B 78 O ALA B 106 SHEET 1 F 2 GLN B 253 VAL B 257 0 SHEET 2 F 2 ARG B 260 PHE B 264 -1 O THR B 262 N ILE B 255 LINK O3' DT D 6 P PDI D 7 1555 1555 1.59 LINK OG PDI D 7 P DT D 8 1555 1555 1.59 LINK O3' DT G 6 P PDI G 7 1555 1555 1.60 LINK OG PDI G 7 P DT G 8 1555 1555 1.59 LINK C ARG A 31 N MSE A 32 1555 1555 1.32 LINK C MSE A 32 N VAL A 33 1555 1555 1.33 LINK C ARG A 74 N MSE A 75 1555 1555 1.32 LINK C MSE A 75 N GLU A 76 1555 1555 1.33 LINK C THR A 95 N MSE A 96 1555 1555 1.32 LINK C MSE A 96 N LYS A 97 1555 1555 1.33 LINK C LYS A 230 N MSE A 231 1555 1555 1.33 LINK C MSE A 231 N GLN A 232 1555 1555 1.33 LINK C ARG B 31 N MSE B 32 1555 1555 1.33 LINK C MSE B 32 N VAL B 33 1555 1555 1.33 LINK C ARG B 74 N MSE B 75 1555 1555 1.33 LINK C MSE B 75 N GLU B 76 1555 1555 1.33 LINK C THR B 95 N AMSE B 96 1555 1555 1.33 LINK C THR B 95 N BMSE B 96 1555 1555 1.33 LINK C AMSE B 96 N LYS B 97 1555 1555 1.33 LINK C BMSE B 96 N LYS B 97 1555 1555 1.32 LINK C LYS B 230 N MSE B 231 1555 1555 1.33 LINK C MSE B 231 N GLN B 232 1555 1555 1.33 LINK SG CYS A 245 ZN ZN A 300 1555 1555 2.31 LINK SG CYS A 248 ZN ZN A 300 1555 1555 2.58 LINK SG CYS A 265 ZN ZN A 300 1555 1555 2.57 LINK SG CYS A 268 ZN ZN A 300 1555 1555 2.25 LINK SG CYS B 245 ZN A ZN B 301 1555 1555 2.41 LINK SG CYS B 245 ZN B ZN B 301 1555 1555 2.53 LINK SG CYS B 248 ZN A ZN B 301 1555 1555 2.51 LINK SG CYS B 265 ZN A ZN B 301 1555 1555 2.43 LINK SG CYS B 268 ZN A ZN B 301 1555 1555 2.42 LINK SG CYS B 268 ZN B ZN B 301 1555 1555 2.43 SITE 1 AC1 4 CYS A 245 CYS A 248 CYS A 265 CYS A 268 SITE 1 AC2 5 CYS B 245 ARG B 247 CYS B 248 CYS B 265 SITE 2 AC2 5 CYS B 268 SITE 1 AC3 9 LEU A 34 TYR A 58 ARG A 74 THR A 113 SITE 2 AC3 9 GLU A 115 LYS A 129 HOH A 308 DT D 9 SITE 3 AC3 9 DT D 10 SITE 1 AC4 8 LEU B 34 TYR B 58 ARG B 74 THR B 113 SITE 2 AC4 8 GLU B 115 LYS B 129 DT G 9 DT G 10 CRYST1 69.880 62.030 80.970 90.00 104.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014310 0.000000 0.003754 0.00000 SCALE2 0.000000 0.016121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012768 0.00000