data_1KGK # _entry.id 1KGK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KGK pdb_00001kgk 10.2210/pdb1kgk/pdb NDB AD0025 ? ? RCSB RCSB014933 ? ? WWPDB D_1000014933 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-12-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KGK _pdbx_database_status.recvd_initial_deposition_date 2001-11-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wilds, C.J.' 1 'Maier, M.A.' 2 'Tereshko, V.' 3 'Manoharan, M.' 4 'Egli, M.' 5 # _citation.id primary _citation.title 'Direct Observation of a Cytosine Analogue that Forms Five Hydrogen Bonds to Guanosine: Guanidino G-Clamp' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 41 _citation.page_first 115 _citation.page_last 117 _citation.year 2002 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12491456 _citation.pdbx_database_id_DOI '10.1002/1521-3773(20020104)41:1<115::AID-ANIE115>3.0.CO;2-R' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilds, C.J.' 1 ? primary 'Maier, M.A.' 2 ? primary 'Tereshko, V.' 3 ? primary 'Manoharan, M.' 4 ? primary 'Egli, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*(GCK)P*GP*TP*AP*TP*AP*CP*GP*C)-3'" 3237.199 2 ? ? ? ? 2 non-polymer syn METHOXY-ETHOXYL 75.086 2 ? ? ? ? 3 non-polymer syn 'SPERMINE (FULLY PROTONATED FORM)' 206.372 1 ? ? ? ? 4 water nat water 18.015 155 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(GCK)(DG)(DT)(DA)(DT)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTATACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 METHOXY-ETHOXYL MOE 3 'SPERMINE (FULLY PROTONATED FORM)' SPK 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 GCK n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Solid phase chemical synthesis.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GCK 'DNA linking' n ;PHOSPHORIC ACID 9-(2-GUANIDINOETHOXY-3-(2-DEOXY-BETA-D-ERYTHROPENTOFURANOSYL))-3H-PYRIMIDO-[5,4-B][1,4]-BENZOOXAZIN-2-ONE]-5'-ESTER ; ? 'C18 H24 N6 O9 P 1' 499.392 HOH non-polymer . WATER ? 'H2 O' 18.015 MOE non-polymer . METHOXY-ETHOXYL ? 'C3 H7 O2 -1' 75.086 SPK non-polymer . 'SPERMINE (FULLY PROTONATED FORM)' ? 'C10 H30 N4 4' 206.372 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 GCK 2 2 2 GCK GCK A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n B 1 1 DG 1 111 111 DG G B . n B 1 2 GCK 2 112 112 GCK GCK B . n B 1 3 DG 3 113 113 DG G B . n B 1 4 DT 4 114 114 DT T B . n B 1 5 DA 5 115 115 DA A B . n B 1 6 DT 6 116 116 DT T B . n B 1 7 DA 7 117 117 DA A B . n B 1 8 DC 8 118 118 DC C B . n B 1 9 DG 9 119 119 DG G B . n B 1 10 DC 10 120 120 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MOE 1 306 306 MOE MOE A . D 3 SPK 1 221 221 SPK SPK A . E 2 MOE 1 316 316 MOE MOE B . F 4 HOH 1 1201 1201 HOH HOH A . F 4 HOH 2 1203 1203 HOH HOH A . F 4 HOH 3 1204 1204 HOH HOH A . F 4 HOH 4 1206 1206 HOH HOH A . F 4 HOH 5 1208 1208 HOH HOH A . F 4 HOH 6 1209 1209 HOH HOH A . F 4 HOH 7 1211 1211 HOH HOH A . F 4 HOH 8 1212 1212 HOH HOH A . F 4 HOH 9 1213 1213 HOH HOH A . F 4 HOH 10 1218 1218 HOH HOH A . F 4 HOH 11 1222 1222 HOH HOH A . F 4 HOH 12 1223 1223 HOH HOH A . F 4 HOH 13 1224 1224 HOH HOH A . F 4 HOH 14 1227 1227 HOH HOH A . F 4 HOH 15 1228 1228 HOH HOH A . F 4 HOH 16 1229 1229 HOH HOH A . F 4 HOH 17 1230 1230 HOH HOH A . F 4 HOH 18 1231 1231 HOH HOH A . F 4 HOH 19 1232 1232 HOH HOH A . F 4 HOH 20 1233 1233 HOH HOH A . F 4 HOH 21 1236 1236 HOH HOH A . F 4 HOH 22 1243 1243 HOH HOH A . F 4 HOH 23 1245 1245 HOH HOH A . F 4 HOH 24 1246 1246 HOH HOH A . F 4 HOH 25 1247 1247 HOH HOH A . F 4 HOH 26 1249 1249 HOH HOH A . F 4 HOH 27 1250 1250 HOH HOH A . F 4 HOH 28 1251 1251 HOH HOH A . F 4 HOH 29 1260 1260 HOH HOH A . F 4 HOH 30 1262 1262 HOH HOH A . F 4 HOH 31 1263 1263 HOH HOH A . F 4 HOH 32 1264 1264 HOH HOH A . F 4 HOH 33 1265 1265 HOH HOH A . F 4 HOH 34 1268 1268 HOH HOH A . F 4 HOH 35 1269 1269 HOH HOH A . F 4 HOH 36 1270 1270 HOH HOH A . F 4 HOH 37 1277 1277 HOH HOH A . F 4 HOH 38 1280 1280 HOH HOH A . F 4 HOH 39 1282 1282 HOH HOH A . F 4 HOH 40 1283 1283 HOH HOH A . F 4 HOH 41 1284 1284 HOH HOH A . F 4 HOH 42 1289 1289 HOH HOH A . F 4 HOH 43 1290 1290 HOH HOH A . F 4 HOH 44 1292 1292 HOH HOH A . F 4 HOH 45 1296 1296 HOH HOH A . F 4 HOH 46 1301 1301 HOH HOH A . F 4 HOH 47 1303 1303 HOH HOH A . F 4 HOH 48 1309 1309 HOH HOH A . F 4 HOH 49 1310 1310 HOH HOH A . F 4 HOH 50 1316 1316 HOH HOH A . F 4 HOH 51 1317 1317 HOH HOH A . F 4 HOH 52 1318 1318 HOH HOH A . F 4 HOH 53 1319 1319 HOH HOH A . F 4 HOH 54 1320 1320 HOH HOH A . F 4 HOH 55 1326 1326 HOH HOH A . F 4 HOH 56 1328 1328 HOH HOH A . F 4 HOH 57 1329 1329 HOH HOH A . F 4 HOH 58 1330 1330 HOH HOH A . F 4 HOH 59 1333 1333 HOH HOH A . F 4 HOH 60 1336 1336 HOH HOH A . F 4 HOH 61 1338 1338 HOH HOH A . F 4 HOH 62 1339 1339 HOH HOH A . F 4 HOH 63 1340 1340 HOH HOH A . F 4 HOH 64 1346 1346 HOH HOH A . F 4 HOH 65 1349 1349 HOH HOH A . F 4 HOH 66 1350 1350 HOH HOH A . F 4 HOH 67 1351 1351 HOH HOH A . F 4 HOH 68 1352 1352 HOH HOH A . F 4 HOH 69 1353 1353 HOH HOH A . F 4 HOH 70 1354 1354 HOH HOH A . F 4 HOH 71 1355 1355 HOH HOH A . F 4 HOH 72 1356 1356 HOH HOH A . F 4 HOH 73 1361 1361 HOH HOH A . F 4 HOH 74 1362 1362 HOH HOH A . F 4 HOH 75 1363 1363 HOH HOH A . F 4 HOH 76 1366 1366 HOH HOH A . F 4 HOH 77 1374 1374 HOH HOH A . F 4 HOH 78 1379 1379 HOH HOH A . G 4 HOH 1 1200 1200 HOH HOH B . G 4 HOH 2 1202 1202 HOH HOH B . G 4 HOH 3 1205 1205 HOH HOH B . G 4 HOH 4 1210 1210 HOH HOH B . G 4 HOH 5 1214 1214 HOH HOH B . G 4 HOH 6 1215 1215 HOH HOH B . G 4 HOH 7 1216 1216 HOH HOH B . G 4 HOH 8 1217 1217 HOH HOH B . G 4 HOH 9 1219 1219 HOH HOH B . G 4 HOH 10 1220 1220 HOH HOH B . G 4 HOH 11 1221 1221 HOH HOH B . G 4 HOH 12 1225 1225 HOH HOH B . G 4 HOH 13 1235 1235 HOH HOH B . G 4 HOH 14 1237 1237 HOH HOH B . G 4 HOH 15 1238 1238 HOH HOH B . G 4 HOH 16 1239 1239 HOH HOH B . G 4 HOH 17 1240 1240 HOH HOH B . G 4 HOH 18 1241 1241 HOH HOH B . G 4 HOH 19 1242 1242 HOH HOH B . G 4 HOH 20 1244 1244 HOH HOH B . G 4 HOH 21 1252 1252 HOH HOH B . G 4 HOH 22 1253 1253 HOH HOH B . G 4 HOH 23 1254 1254 HOH HOH B . G 4 HOH 24 1255 1255 HOH HOH B . G 4 HOH 25 1256 1256 HOH HOH B . G 4 HOH 26 1257 1257 HOH HOH B . G 4 HOH 27 1258 1258 HOH HOH B . G 4 HOH 28 1259 1259 HOH HOH B . G 4 HOH 29 1261 1261 HOH HOH B . G 4 HOH 30 1266 1266 HOH HOH B . G 4 HOH 31 1267 1267 HOH HOH B . G 4 HOH 32 1271 1271 HOH HOH B . G 4 HOH 33 1272 1272 HOH HOH B . G 4 HOH 34 1273 1273 HOH HOH B . G 4 HOH 35 1274 1274 HOH HOH B . G 4 HOH 36 1276 1276 HOH HOH B . G 4 HOH 37 1278 1278 HOH HOH B . G 4 HOH 38 1279 1279 HOH HOH B . G 4 HOH 39 1281 1281 HOH HOH B . G 4 HOH 40 1286 1286 HOH HOH B . G 4 HOH 41 1287 1287 HOH HOH B . G 4 HOH 42 1288 1288 HOH HOH B . G 4 HOH 43 1291 1291 HOH HOH B . G 4 HOH 44 1293 1293 HOH HOH B . G 4 HOH 45 1294 1294 HOH HOH B . G 4 HOH 46 1295 1295 HOH HOH B . G 4 HOH 47 1297 1297 HOH HOH B . G 4 HOH 48 1298 1298 HOH HOH B . G 4 HOH 49 1299 1299 HOH HOH B . G 4 HOH 50 1300 1300 HOH HOH B . G 4 HOH 51 1304 1304 HOH HOH B . G 4 HOH 52 1305 1305 HOH HOH B . G 4 HOH 53 1307 1307 HOH HOH B . G 4 HOH 54 1308 1308 HOH HOH B . G 4 HOH 55 1311 1311 HOH HOH B . G 4 HOH 56 1313 1313 HOH HOH B . G 4 HOH 57 1314 1314 HOH HOH B . G 4 HOH 58 1315 1315 HOH HOH B . G 4 HOH 59 1322 1322 HOH HOH B . G 4 HOH 60 1323 1323 HOH HOH B . G 4 HOH 61 1325 1325 HOH HOH B . G 4 HOH 62 1327 1327 HOH HOH B . G 4 HOH 63 1332 1332 HOH HOH B . G 4 HOH 64 1334 1334 HOH HOH B . G 4 HOH 65 1335 1335 HOH HOH B . G 4 HOH 66 1342 1342 HOH HOH B . G 4 HOH 67 1343 1343 HOH HOH B . G 4 HOH 68 1348 1348 HOH HOH B . G 4 HOH 69 1359 1359 HOH HOH B . G 4 HOH 70 1367 1367 HOH HOH B . G 4 HOH 71 1368 1368 HOH HOH B . G 4 HOH 72 1370 1370 HOH HOH B . G 4 HOH 73 1372 1372 HOH HOH B . G 4 HOH 74 1373 1373 HOH HOH B . G 4 HOH 75 1375 1375 HOH HOH B . G 4 HOH 76 1377 1377 HOH HOH B . G 4 HOH 77 1378 1378 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1KGK _cell.length_a 24.520 _cell.length_b 43.020 _cell.length_c 46.680 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KGK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1KGK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.84 _exptl_crystal.density_percent_sol 33.07 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Hanging Drop' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;1.2 mM DNA, 5% MPD, 20 mM Sodium Cacodylate, 40 mM sodium chloride, 6 mM potassium chloride, 10 mM magnesium chloride; equilibrated against 35% MPD, pH 6.0, Hanging Drop, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'Sodium Cacodylate' ? ? ? 1 3 1 NaCl ? ? ? 1 4 1 KCl ? ? ? 1 5 1 MgCl2 ? ? ? 1 6 1 MPD ? ? ? 1 7 2 NaCl ? ? ? 1 8 2 KCl ? ? ? 1 9 2 MgCl2 ? ? ? 1 10 2 MPD ? ? ? 1 11 2 'Sodium Cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-04-29 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.978 # _reflns.entry_id 1KGK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10 _reflns.d_resolution_high 1.0 _reflns.number_obs 27320 _reflns.number_all 27320 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.0470000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.0 _reflns_shell.d_res_low 1.1 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1KGK _refine.ls_number_reflns_obs 27320 _refine.ls_number_reflns_all 27320 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 10 _refine.ls_d_res_high 1.0 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.1280000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 5528 _refine.ls_number_restraints 26595 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1KGK _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen 283.5 _refine_analyze.occupancy_sum_non_hydrogen 608 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 686 _refine_hist.pdbx_number_atoms_ligand 68 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 909 _refine_hist.d_res_high 1.0 _refine_hist.d_res_low 10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.222 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.055 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1KGK _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1260000 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 26023 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1KGK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1KGK _struct.title 'Direct Observation of a Cytosine Analog that Forms Five Hydrogen Bonds to Guanosine; Guanyl G-Clamp' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KGK _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-form Double Helix, cytosine analogue, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1KGK _struct_ref.pdbx_db_accession 1KGK _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1KGK A 1 ? 10 ? 1KGK 1 ? 10 ? 1 10 2 1 1KGK B 1 ? 10 ? 1KGK 111 ? 120 ? 111 120 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A GCK 2 P ? ? A DG 1 A GCK 2 1_555 ? ? ? ? ? ? ? 1.561 ? ? covale2 covale both ? A GCK 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A GCK 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale3 covale none ? A DT 6 "C2'" ? ? ? 1_555 C MOE . "O2'" ? ? A DT 6 A MOE 306 1_555 ? ? ? ? ? ? ? 1.408 ? ? covale4 covale both ? B DG 1 "O3'" ? ? ? 1_555 B GCK 2 P ? ? B DG 111 B GCK 112 1_555 ? ? ? ? ? ? ? 1.538 ? ? covale5 covale both ? B GCK 2 "O3'" ? ? ? 1_555 B DG 3 P ? ? B GCK 112 B DG 113 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale6 covale none ? B DT 6 "C2'" ? ? ? 1_555 E MOE . "O2'" ? ? B DT 116 B MOE 316 1_555 ? ? ? ? ? ? ? 1.448 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A GCK 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A GCK 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A GCK 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A GCK 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A GCK 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A GCK 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 5 B DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 5 B DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 6 B DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 6 B DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B GCK 2 N3 ? ? A DG 9 B GCK 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B GCK 2 O2 ? ? A DG 9 B GCK 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B GCK 2 N4 ? ? A DG 9 B GCK 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MOE 306 ? 3 'BINDING SITE FOR RESIDUE MOE A 306' AC2 Software B MOE 316 ? 4 'BINDING SITE FOR RESIDUE MOE B 316' AC3 Software A SPK 221 ? 12 'BINDING SITE FOR RESIDUE SPK A 221' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DG A 1 ? DG A 1 . ? 3_555 ? 2 AC1 3 DT A 6 ? DT A 6 . ? 1_555 ? 3 AC1 3 DA A 7 ? DA A 7 . ? 1_555 ? 4 AC2 4 GCK A 2 ? GCK A 2 . ? 3_555 ? 5 AC2 4 DT B 6 ? DT B 116 . ? 1_555 ? 6 AC2 4 DA B 7 ? DA B 117 . ? 1_555 ? 7 AC2 4 HOH G . ? HOH B 1255 . ? 1_555 ? 8 AC3 12 GCK A 2 ? GCK A 2 . ? 1_555 ? 9 AC3 12 HOH F . ? HOH A 1204 . ? 1_555 ? 10 AC3 12 HOH F . ? HOH A 1206 . ? 1_555 ? 11 AC3 12 HOH F . ? HOH A 1230 . ? 1_555 ? 12 AC3 12 HOH F . ? HOH A 1262 . ? 1_555 ? 13 AC3 12 HOH F . ? HOH A 1329 . ? 1_455 ? 14 AC3 12 HOH F . ? HOH A 1354 . ? 1_555 ? 15 AC3 12 DA B 5 ? DA B 115 . ? 1_555 ? 16 AC3 12 DT B 6 ? DT B 116 . ? 1_555 ? 17 AC3 12 HOH G . ? HOH B 1215 . ? 1_555 ? 18 AC3 12 HOH G . ? HOH B 1299 . ? 1_555 ? 19 AC3 12 HOH G . ? HOH B 1373 . ? 1_455 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO5'" A DG 1 ? B O A HOH 1317 ? ? 1.53 2 1 O B HOH 1241 ? ? O B HOH 1375 ? ? 1.66 3 1 O A HOH 1310 ? ? O A HOH 1352 ? ? 1.73 4 1 O B HOH 1314 ? ? O B HOH 1315 ? ? 1.82 5 1 "O5'" A DG 1 ? B O A HOH 1317 ? ? 2.10 6 1 N1 A SPK 221 ? ? O A HOH 1354 ? ? 2.11 7 1 O B HOH 1288 ? ? O B HOH 1307 ? ? 2.15 8 1 O B HOH 1313 ? ? O B HOH 1335 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 H1C A SPK 221 ? ? 1_555 O A HOH 1329 ? ? 1_455 1.60 2 1 O A HOH 1316 ? ? 1_555 O B HOH 1255 ? ? 3_545 2.11 3 1 O A HOH 1333 ? ? 1_555 O B HOH 1276 ? ? 3_555 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 1.467 1.516 -0.049 0.008 N 2 1 "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 1.419 1.518 -0.099 0.010 N 3 1 "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.409 1.518 -0.109 0.010 N 4 1 "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.414 1.518 -0.104 0.010 N 5 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.505 1.420 0.085 0.011 N 6 1 "O3'" A DA 7 ? ? P A DC 8 ? ? 1.522 1.607 -0.085 0.012 Y 7 1 "C2'" A DG 9 ? ? "C1'" A DG 9 ? ? 1.453 1.518 -0.065 0.010 N 8 1 "C3'" B DG 111 ? ? "C2'" B DG 111 ? ? 1.467 1.516 -0.049 0.008 N 9 1 "C2'" B DG 111 ? ? "C1'" B DG 111 ? ? 1.409 1.518 -0.109 0.010 N 10 1 "O4'" B DG 111 ? ? "C1'" B DG 111 ? ? 1.521 1.420 0.101 0.011 N 11 1 "C2'" B DA 115 ? ? "C1'" B DA 115 ? ? 1.426 1.518 -0.092 0.010 N 12 1 "C2'" B DT 116 ? ? "C1'" B DT 116 ? ? 1.452 1.518 -0.066 0.010 N 13 1 "C2'" B DG 119 ? ? "C1'" B DG 119 ? ? 1.434 1.518 -0.084 0.010 N 14 1 "C3'" B DC 120 ? ? "C2'" B DC 120 ? ? 1.467 1.516 -0.049 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? "C2'" A DG 1 ? ? 110.27 106.80 3.47 0.50 N 2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 101.42 108.00 -6.58 0.70 N 3 1 "C1'" A DG 3 ? ? "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? 103.85 110.10 -6.25 1.00 N 4 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 112.24 106.80 5.44 0.50 N 5 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 100.86 108.00 -7.14 0.70 N 6 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 110.08 106.80 3.28 0.50 N 7 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 103.07 108.00 -4.93 0.70 N 8 1 "O4'" A DT 6 ? ? "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? 101.69 104.50 -2.81 0.40 N 9 1 "O5'" A DC 8 ? ? P A DC 8 ? ? OP2 A DC 8 ? ? 97.15 105.70 -8.55 0.90 N 10 1 "C1'" B DG 111 ? ? "O4'" B DG 111 ? ? "C4'" B DG 111 ? ? 103.66 110.10 -6.44 1.00 N 11 1 "O4'" B DG 111 ? ? "C1'" B DG 111 ? ? "C2'" B DG 111 ? ? 111.02 106.80 4.22 0.50 N 12 1 "O4'" B DG 111 ? ? "C1'" B DG 111 ? ? N9 B DG 111 ? ? 99.74 108.00 -8.26 0.70 N 13 1 "O4'" B DG 113 ? ? "C4'" B DG 113 ? ? "C3'" B DG 113 ? ? 102.03 104.50 -2.47 0.40 N 14 1 "O4'" B DA 117 ? ? "C4'" B DA 117 ? ? "C3'" B DA 117 ? ? 101.96 104.50 -2.54 0.40 N 15 1 "O4'" B DG 119 ? ? "C1'" B DG 119 ? ? "C2'" B DG 119 ? ? 110.33 106.80 3.53 0.50 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GCK 2 A GCK 2 ? DC ? 2 B GCK 2 B GCK 112 ? DC ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 GCK P P N N 144 GCK O1P O N N 145 GCK O2P O N N 146 GCK "O5'" O N N 147 GCK N1 N N N 148 GCK C6 C N N 149 GCK C2 C N N 150 GCK O2 O N N 151 GCK N3 N N N 152 GCK C4 C N N 153 GCK N4 N N N 154 GCK C5 C N N 155 GCK O8 O N N 156 GCK C9 C Y N 157 GCK C10 C Y N 158 GCK C11 C Y N 159 GCK C12 C Y N 160 GCK C13 C Y N 161 GCK C14 C Y N 162 GCK O15 O N N 163 GCK C16 C N N 164 GCK C17 C N N 165 GCK N18 N N N 166 GCK C19 C N N 167 GCK N20 N N N 168 GCK N21 N N N 169 GCK "C2'" C N N 170 GCK "C5'" C N N 171 GCK "C4'" C N R 172 GCK "O4'" O N N 173 GCK "C1'" C N R 174 GCK "C3'" C N S 175 GCK "O3'" O N N 176 GCK O3P O N N 177 GCK HOP2 H N N 178 GCK H6 H N N 179 GCK H4 H N N 180 GCK H10 H N N 181 GCK H11 H N N 182 GCK H12 H N N 183 GCK H161 H N N 184 GCK H162 H N N 185 GCK H171 H N N 186 GCK H172 H N N 187 GCK H18 H N N 188 GCK H201 H N N 189 GCK H202 H N N 190 GCK H211 H N N 191 GCK H212 H N N 192 GCK "H2'1" H N N 193 GCK "H2'2" H N N 194 GCK "H5'1" H N N 195 GCK "H5'2" H N N 196 GCK "H4'" H N N 197 GCK "H1'" H N N 198 GCK "H3'" H N N 199 GCK H3T H N N 200 GCK HOP3 H N N 201 HOH O O N N 202 HOH H1 H N N 203 HOH H2 H N N 204 MOE "O2'" O N N 205 MOE "CA'" C N N 206 MOE "CB'" C N N 207 MOE "OC'" O N N 208 MOE "CD'" C N N 209 MOE "HA'1" H N N 210 MOE "HA'2" H N N 211 MOE "HB'1" H N N 212 MOE "HB'2" H N N 213 MOE "HD'1" H N N 214 MOE "HD'2" H N N 215 MOE "HD'3" H N N 216 SPK N1 N N N 217 SPK C2 C N N 218 SPK C3 C N N 219 SPK C4 C N N 220 SPK N5 N N N 221 SPK C6 C N N 222 SPK C7 C N N 223 SPK C8 C N N 224 SPK C9 C N N 225 SPK N10 N N N 226 SPK C11 C N N 227 SPK C12 C N N 228 SPK C13 C N N 229 SPK N14 N N N 230 SPK H1A H N N 231 SPK H1B H N N 232 SPK H1C H N N 233 SPK H2A H N N 234 SPK H2B H N N 235 SPK H3A H N N 236 SPK H3B H N N 237 SPK H4A H N N 238 SPK H4B H N N 239 SPK H5A H N N 240 SPK H5B H N N 241 SPK H6A H N N 242 SPK H6B H N N 243 SPK H7A H N N 244 SPK H7B H N N 245 SPK H8A H N N 246 SPK H8B H N N 247 SPK H9A H N N 248 SPK H9B H N N 249 SPK H101 H N N 250 SPK H102 H N N 251 SPK H111 H N N 252 SPK H112 H N N 253 SPK H121 H N N 254 SPK H122 H N N 255 SPK H131 H N N 256 SPK H132 H N N 257 SPK H141 H N N 258 SPK H142 H N N 259 SPK H143 H N N 260 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 GCK P O1P doub N N 150 GCK P O2P sing N N 151 GCK P "O5'" sing N N 152 GCK P O3P sing N N 153 GCK O2P HOP2 sing N N 154 GCK "O5'" "C5'" sing N N 155 GCK N1 C6 sing N N 156 GCK N1 C2 sing N N 157 GCK N1 "C1'" sing N N 158 GCK C6 C5 doub N N 159 GCK C6 H6 sing N N 160 GCK C2 O2 doub N N 161 GCK C2 N3 sing N N 162 GCK N3 C4 doub N N 163 GCK C4 N4 sing N N 164 GCK C4 C5 sing N N 165 GCK N4 C14 sing N N 166 GCK N4 H4 sing N N 167 GCK C5 O8 sing N N 168 GCK O8 C9 sing N N 169 GCK C9 C10 doub Y N 170 GCK C9 C14 sing Y N 171 GCK C10 C11 sing Y N 172 GCK C10 H10 sing N N 173 GCK C11 C12 doub Y N 174 GCK C11 H11 sing N N 175 GCK C12 C13 sing Y N 176 GCK C12 H12 sing N N 177 GCK C13 C14 doub Y N 178 GCK C13 O15 sing N N 179 GCK O15 C16 sing N N 180 GCK C16 C17 sing N N 181 GCK C16 H161 sing N N 182 GCK C16 H162 sing N N 183 GCK C17 N18 sing N N 184 GCK C17 H171 sing N N 185 GCK C17 H172 sing N N 186 GCK N18 C19 sing N N 187 GCK N18 H18 sing N N 188 GCK C19 N20 sing N N 189 GCK C19 N21 doub N N 190 GCK N20 H201 sing N N 191 GCK N20 H202 sing N N 192 GCK N21 H211 sing N N 193 GCK N21 H212 sing N N 194 GCK "C2'" "C1'" sing N N 195 GCK "C2'" "C3'" sing N N 196 GCK "C2'" "H2'1" sing N N 197 GCK "C2'" "H2'2" sing N N 198 GCK "C5'" "C4'" sing N N 199 GCK "C5'" "H5'1" sing N N 200 GCK "C5'" "H5'2" sing N N 201 GCK "C4'" "O4'" sing N N 202 GCK "C4'" "C3'" sing N N 203 GCK "C4'" "H4'" sing N N 204 GCK "O4'" "C1'" sing N N 205 GCK "C1'" "H1'" sing N N 206 GCK "C3'" "O3'" sing N N 207 GCK "C3'" "H3'" sing N N 208 GCK "O3'" H3T sing N N 209 GCK O3P HOP3 sing N N 210 HOH O H1 sing N N 211 HOH O H2 sing N N 212 MOE "O2'" "CA'" sing N N 213 MOE "CA'" "CB'" sing N N 214 MOE "CA'" "HA'1" sing N N 215 MOE "CA'" "HA'2" sing N N 216 MOE "CB'" "OC'" sing N N 217 MOE "CB'" "HB'1" sing N N 218 MOE "CB'" "HB'2" sing N N 219 MOE "OC'" "CD'" sing N N 220 MOE "CD'" "HD'1" sing N N 221 MOE "CD'" "HD'2" sing N N 222 MOE "CD'" "HD'3" sing N N 223 SPK N1 C2 sing N N 224 SPK N1 H1A sing N N 225 SPK N1 H1B sing N N 226 SPK N1 H1C sing N N 227 SPK C2 C3 sing N N 228 SPK C2 H2A sing N N 229 SPK C2 H2B sing N N 230 SPK C3 C4 sing N N 231 SPK C3 H3A sing N N 232 SPK C3 H3B sing N N 233 SPK C4 N5 sing N N 234 SPK C4 H4A sing N N 235 SPK C4 H4B sing N N 236 SPK N5 C6 sing N N 237 SPK N5 H5A sing N N 238 SPK N5 H5B sing N N 239 SPK C6 C7 sing N N 240 SPK C6 H6A sing N N 241 SPK C6 H6B sing N N 242 SPK C7 C8 sing N N 243 SPK C7 H7A sing N N 244 SPK C7 H7B sing N N 245 SPK C8 C9 sing N N 246 SPK C8 H8A sing N N 247 SPK C8 H8B sing N N 248 SPK C9 N10 sing N N 249 SPK C9 H9A sing N N 250 SPK C9 H9B sing N N 251 SPK N10 C11 sing N N 252 SPK N10 H101 sing N N 253 SPK N10 H102 sing N N 254 SPK C11 C12 sing N N 255 SPK C11 H111 sing N N 256 SPK C11 H112 sing N N 257 SPK C12 C13 sing N N 258 SPK C12 H121 sing N N 259 SPK C12 H122 sing N N 260 SPK C13 N14 sing N N 261 SPK C13 H131 sing N N 262 SPK C13 H132 sing N N 263 SPK N14 H141 sing N N 264 SPK N14 H142 sing N N 265 SPK N14 H143 sing N N 266 # _ndb_struct_conf_na.entry_id 1KGK _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.214 -0.085 0.233 7.587 -0.282 -1.619 1 A_DG1:DC120_B A 1 ? B 120 ? 19 1 1 A GCK 2 1_555 B DG 9 1_555 0.211 -0.107 -0.172 12.290 -9.050 -0.857 2 A_GCK2:DG119_B A 2 ? B 119 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.335 -0.161 0.173 -5.069 -14.018 -0.833 3 A_DG3:DC118_B A 3 ? B 118 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.162 -0.124 -0.081 -3.017 -17.904 -2.004 4 A_DT4:DA117_B A 4 ? B 117 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 0.170 -0.111 0.119 -3.710 -16.170 -5.582 5 A_DA5:DT116_B A 5 ? B 116 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.113 -0.078 0.290 2.002 -14.656 4.585 6 A_DT6:DA115_B A 6 ? B 115 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 0.039 -0.094 -0.009 2.946 -9.404 0.967 7 A_DA7:DT114_B A 7 ? B 114 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.249 -0.173 0.036 2.903 -9.820 -0.261 8 A_DC8:DG113_B A 8 ? B 113 ? 19 1 1 A DG 9 1_555 B GCK 2 1_555 -0.349 -0.158 -0.126 -10.803 -14.533 1.112 9 A_DG9:GCK112_B A 9 ? B 112 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.266 -0.087 0.188 -5.687 3.036 -0.159 10 A_DC10:DG111_B A 10 ? B 111 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A GCK 2 1_555 B DG 9 1_555 -0.208 -1.536 3.226 0.548 -0.594 40.615 -2.148 0.359 3.244 -0.856 -0.790 40.623 1 AA_DG1GCK2:DG119DC120_BB A 1 ? B 120 ? A 2 ? B 119 ? 1 A GCK 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.206 -2.175 3.651 -3.857 6.645 25.176 -6.632 -0.623 2.986 14.811 8.597 26.305 2 AA_GCK2DG3:DC118DG119_BB A 2 ? B 119 ? A 3 ? B 118 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -1.091 -1.495 3.142 -1.115 4.785 37.409 -2.892 1.553 2.965 7.421 1.729 37.719 3 AA_DG3DT4:DA117DC118_BB A 3 ? B 118 ? A 4 ? B 117 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B DT 6 1_555 0.606 -1.500 3.208 1.660 19.719 27.112 -5.364 -0.821 1.775 36.526 -3.075 33.456 4 AA_DT4DA5:DT116DA117_BB A 4 ? B 117 ? A 5 ? B 116 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 0.942 -1.374 3.147 0.706 5.069 32.671 -3.214 -1.544 2.926 8.943 -1.246 33.059 5 AA_DA5DT6:DA115DT116_BB A 5 ? B 116 ? A 6 ? B 115 ? 1 A DT 6 1_555 B DA 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.264 -1.412 3.082 0.962 14.516 30.808 -4.389 0.583 2.205 25.610 -1.697 33.995 6 AA_DT6DA7:DT114DA115_BB A 6 ? B 115 ? A 7 ? B 114 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 0.493 -2.380 3.361 -0.040 3.167 27.414 -5.752 -1.044 3.071 6.654 0.084 27.593 7 AA_DA7DC8:DG113DT114_BB A 7 ? B 114 ? A 8 ? B 113 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B GCK 2 1_555 -0.539 -1.914 3.480 3.091 11.275 29.528 -5.481 1.529 2.529 21.108 -5.787 31.710 8 AA_DC8DG9:GCK112DG113_BB A 8 ? B 113 ? A 9 ? B 112 ? 1 A DG 9 1_555 B GCK 2 1_555 A DC 10 1_555 B DG 1 1_555 0.596 -1.440 3.249 1.069 1.377 35.937 -2.525 -0.815 3.209 2.231 -1.731 35.978 9 AA_DG9DC10:DG111GCK112_BB A 9 ? B 112 ? A 10 ? B 111 ? # _atom_sites.entry_id 1KGK _atom_sites.fract_transf_matrix[1][1] 0.040783 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023245 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021422 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O P # loop_