HEADER LYASE 29-NOV-01 1KHF TITLE PEPCK COMPLEX WITH PEP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC (GTP); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOENOLPYRUVATE CARBOXYLASE, PEPCK, PEPCK-C; COMPND 5 EC: 4.1.1.32; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCONEOGENESIS, P-LOOP, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.DUNTEN,C.BELUNIS,R.CROWTHER,K.HOLLFELDER,U.KAMMLOTT,W.LEVIN, AUTHOR 2 H.MICHEL,G.B.RAMSEY,A.SWAIN,D.WEBER,S.J.WERTHEIMER REVDAT 4 14-FEB-24 1KHF 1 REMARK SEQADV LINK REVDAT 3 11-OCT-17 1KHF 1 REMARK REVDAT 2 24-FEB-09 1KHF 1 VERSN REVDAT 1 27-FEB-02 1KHF 0 JRNL AUTH P.DUNTEN,C.BELUNIS,R.CROWTHER,K.HOLLFELDER,U.KAMMLOTT, JRNL AUTH 2 W.LEVIN,H.MICHEL,G.B.RAMSEY,A.SWAIN,D.WEBER,S.J.WERTHEIMER JRNL TITL CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC PHOSPHOENOLPYRUVATE JRNL TITL 2 CARBOXYKINASE REVEALS A NEW GTP-BINDING SITE. JRNL REF J.MOL.BIOL. V. 316 257 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 11851336 JRNL DOI 10.1006/JMBI.2001.5364 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 34451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1724 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4721 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : -0.40000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.562 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.028 ; 0.021 REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.392 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.210 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.671 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.621 ; 4.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000014964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34451 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1500, MES, DTT, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLU A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 GLN A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 THR A 465 REMARK 465 ALA A 466 REMARK 465 ALA A 467 REMARK 465 ALA A 468 REMARK 465 GLU A 469 REMARK 465 HIS A 470 REMARK 465 LYS A 471 REMARK 465 GLY A 472 REMARK 465 LYS A 547 REMARK 465 ALA A 548 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 95 CB VAL A 95 CG1 0.127 REMARK 500 TYR A 140 CD1 TYR A 140 CE1 0.109 REMARK 500 TRP A 516 CE3 TRP A 516 CZ3 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 84 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 318 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 365 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 395 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 520 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 545 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 562 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 591 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 243 -77.63 -85.02 REMARK 500 LEU A 248 -66.07 -101.48 REMARK 500 ASP A 311 -49.07 -140.10 REMARK 500 PHE A 333 75.60 -107.59 REMARK 500 ASN A 344 69.26 -168.39 REMARK 500 PHE A 480 14.82 53.96 REMARK 500 PHE A 530 -132.18 56.62 REMARK 500 ASN A 601 -119.96 52.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 244 NZ REMARK 620 2 HIS A 264 NE2 84.9 REMARK 620 3 ASP A 311 OD1 91.8 83.7 REMARK 620 4 HOH A 732 O 99.1 176.0 96.0 REMARK 620 5 HOH A 797 O 92.8 96.1 175.4 83.8 REMARK 620 6 HOH A 804 O 176.2 91.5 86.6 84.5 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PEP A 703 O2 REMARK 620 2 PEP A 703 O1P 57.3 REMARK 620 3 HOH A 813 O 122.8 116.3 REMARK 620 4 HOH A 861 O 152.6 115.8 84.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEP A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KHB RELATED DB: PDB REMARK 900 PEPCK COMPLEX WITH NONHYDROLYZABLE GTP ANALOG, NATIVE DATA REMARK 900 RELATED ID: 1KHE RELATED DB: PDB REMARK 900 PEPCK COMPLEX WITH NONHYDROLYZABLE GTP ANALOG, MAD DATA REMARK 900 RELATED ID: 1KHG RELATED DB: PDB REMARK 900 PEPCK DBREF 1KHF A 1 622 UNP P35558 PPCKC_HUMAN 1 622 SEQADV 1KHF GLY A -2 UNP P35558 CLONING ARTIFACT SEQADV 1KHF GLU A -1 UNP P35558 CLONING ARTIFACT SEQADV 1KHF LEU A 0 UNP P35558 CLONING ARTIFACT SEQADV 1KHF VAL A 267 UNP P35558 ILE 267 VARIANT SEQADV 1KHF ASP A 586 UNP P35558 GLU 586 VARIANT SEQADV 1KHF VAL A 597 UNP P35558 GLU 597 VARIANT SEQRES 1 A 625 GLY GLU LEU MET PRO PRO GLN LEU GLN ASN GLY LEU ASN SEQRES 2 A 625 LEU SER ALA LYS VAL VAL GLN GLY SER LEU ASP SER LEU SEQRES 3 A 625 PRO GLN ALA VAL ARG GLU PHE LEU GLU ASN ASN ALA GLU SEQRES 4 A 625 LEU CYS GLN PRO ASP HIS ILE HIS ILE CYS ASP GLY SER SEQRES 5 A 625 GLU GLU GLU ASN GLY ARG LEU LEU GLY GLN MET GLU GLU SEQRES 6 A 625 GLU GLY ILE LEU ARG ARG LEU LYS LYS TYR ASP ASN CYS SEQRES 7 A 625 TRP LEU ALA LEU THR ASP PRO ARG ASP VAL ALA ARG ILE SEQRES 8 A 625 GLU SER LYS THR VAL ILE VAL THR GLN GLU GLN ARG ASP SEQRES 9 A 625 THR VAL PRO ILE PRO LYS THR GLY LEU SER GLN LEU GLY SEQRES 10 A 625 ARG TRP MET SER GLU GLU ASP PHE GLU LYS ALA PHE ASN SEQRES 11 A 625 ALA ARG PHE PRO GLY CYS MET LYS GLY ARG THR MET TYR SEQRES 12 A 625 VAL ILE PRO PHE SER MET GLY PRO LEU GLY SER PRO LEU SEQRES 13 A 625 SER LYS ILE GLY ILE GLU LEU THR ASP SER PRO TYR VAL SEQRES 14 A 625 VAL ALA SER MET ARG ILE MET THR ARG MET GLY THR PRO SEQRES 15 A 625 VAL LEU GLU ALA LEU GLY ASP GLY GLU PHE VAL LYS CYS SEQRES 16 A 625 LEU HIS SER VAL GLY CYS PRO LEU PRO LEU GLN LYS PRO SEQRES 17 A 625 LEU VAL ASN ASN TRP PRO CYS ASN PRO GLU LEU THR LEU SEQRES 18 A 625 ILE ALA HIS LEU PRO ASP ARG ARG GLU ILE ILE SER PHE SEQRES 19 A 625 GLY SER GLY TYR GLY GLY ASN SER LEU LEU GLY LYS LYS SEQRES 20 A 625 CYS PHE ALA LEU ARG MET ALA SER ARG LEU ALA LYS GLU SEQRES 21 A 625 GLU GLY TRP LEU ALA GLU HIS MET LEU VAL LEU GLY ILE SEQRES 22 A 625 THR ASN PRO GLU GLY GLU LYS LYS TYR LEU ALA ALA ALA SEQRES 23 A 625 PHE PRO SER ALA CYS GLY LYS THR ASN LEU ALA MET MET SEQRES 24 A 625 ASN PRO SER LEU PRO GLY TRP LYS VAL GLU CYS VAL GLY SEQRES 25 A 625 ASP ASP ILE ALA TRP MET LYS PHE ASP ALA GLN GLY HIS SEQRES 26 A 625 LEU ARG ALA ILE ASN PRO GLU ASN GLY PHE PHE GLY VAL SEQRES 27 A 625 ALA PRO GLY THR SER VAL LYS THR ASN PRO ASN ALA ILE SEQRES 28 A 625 LYS THR ILE GLN LYS ASN THR ILE PHE THR ASN VAL ALA SEQRES 29 A 625 GLU THR SER ASP GLY GLY VAL TYR TRP GLU GLY ILE ASP SEQRES 30 A 625 GLU PRO LEU ALA SER GLY VAL THR ILE THR SER TRP LYS SEQRES 31 A 625 ASN LYS GLU TRP SER SER GLU ASP GLY GLU PRO CYS ALA SEQRES 32 A 625 HIS PRO ASN SER ARG PHE CYS THR PRO ALA SER GLN CYS SEQRES 33 A 625 PRO ILE ILE ASP ALA ALA TRP GLU SER PRO GLU GLY VAL SEQRES 34 A 625 PRO ILE GLU GLY ILE ILE PHE GLY GLY ARG ARG PRO ALA SEQRES 35 A 625 GLY VAL PRO LEU VAL TYR GLU ALA LEU SER TRP GLN HIS SEQRES 36 A 625 GLY VAL PHE VAL GLY ALA ALA MET ARG SER GLU ALA THR SEQRES 37 A 625 ALA ALA ALA GLU HIS LYS GLY LYS ILE ILE MET HIS ASP SEQRES 38 A 625 PRO PHE ALA MET ARG PRO PHE PHE GLY TYR ASN PHE GLY SEQRES 39 A 625 LYS TYR LEU ALA HIS TRP LEU SER MET ALA GLN HIS PRO SEQRES 40 A 625 ALA ALA LYS LEU PRO LYS ILE PHE HIS VAL ASN TRP PHE SEQRES 41 A 625 ARG LYS ASP LYS GLU GLY LYS PHE LEU TRP PRO GLY PHE SEQRES 42 A 625 GLY GLU ASN SER ARG VAL LEU GLU TRP MET PHE ASN ARG SEQRES 43 A 625 ILE ASP GLY LYS ALA SER THR LYS LEU THR PRO ILE GLY SEQRES 44 A 625 TYR ILE PRO LYS GLU ASP ALA LEU ASN LEU LYS GLY LEU SEQRES 45 A 625 GLY HIS ILE ASN MET MET GLU LEU PHE SER ILE SER LYS SEQRES 46 A 625 GLU PHE TRP ASP LYS GLU VAL GLU ASP ILE GLU LYS TYR SEQRES 47 A 625 LEU VAL ASP GLN VAL ASN ALA ASP LEU PRO CYS GLU ILE SEQRES 48 A 625 GLU ARG GLU ILE LEU ALA LEU LYS GLN ARG ILE SER GLN SEQRES 49 A 625 MET HET MN A 701 1 HET NA A 702 1 HET PEP A 703 10 HET EDO A 704 4 HET EDO A 705 4 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN MN 2+ FORMUL 3 NA NA 1+ FORMUL 4 PEP C3 H5 O6 P FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *164(H2 O) HELIX 1 1 ASN A 10 ALA A 13 5 4 HELIX 2 2 SER A 19 LEU A 23 5 5 HELIX 3 3 PRO A 24 GLN A 39 1 16 HELIX 4 4 SER A 49 GLU A 63 1 15 HELIX 5 5 ILE A 88 SER A 90 5 3 HELIX 6 6 GLU A 98 VAL A 103 1 6 HELIX 7 7 SER A 118 ALA A 128 1 11 HELIX 8 8 SER A 163 THR A 174 1 12 HELIX 9 9 GLY A 177 GLY A 185 1 9 HELIX 10 10 ASN A 213 THR A 217 5 5 HELIX 11 11 PRO A 223 ARG A 225 5 3 HELIX 12 12 TYR A 235 LEU A 240 1 6 HELIX 13 13 LEU A 248 GLU A 258 1 11 HELIX 14 14 GLY A 289 MET A 295 1 7 HELIX 15 15 ASN A 344 ILE A 351 1 8 HELIX 16 16 SER A 392 GLY A 396 5 5 HELIX 17 17 SER A 411 CYS A 413 5 3 HELIX 18 18 SER A 449 ALA A 459 1 11 HELIX 19 19 PRO A 479 MET A 482 5 4 HELIX 20 20 ASN A 489 MET A 500 1 12 HELIX 21 21 ALA A 501 HIS A 503 5 3 HELIX 22 22 GLY A 529 GLY A 531 5 3 HELIX 23 23 GLU A 532 ASP A 545 1 14 HELIX 24 24 ASN A 573 PHE A 578 1 6 HELIX 25 25 SER A 581 ASN A 601 1 21 HELIX 26 26 ALA A 602 LEU A 604 5 3 HELIX 27 27 PRO A 605 GLN A 621 1 17 SHEET 1 A 9 TRP A 116 MET A 117 0 SHEET 2 A 9 THR A 92 VAL A 95 1 N ILE A 94 O MET A 117 SHEET 3 A 9 LEU A 218 LEU A 222 1 O ILE A 219 N VAL A 93 SHEET 4 A 9 GLU A 227 PHE A 231 -1 O ILE A 229 N ALA A 220 SHEET 5 A 9 VAL A 190 SER A 195 1 N LEU A 193 O SER A 230 SHEET 6 A 9 LYS A 155 THR A 161 1 N LEU A 160 O CYS A 192 SHEET 7 A 9 THR A 138 MET A 146 -1 N MET A 146 O LYS A 155 SHEET 8 A 9 HIS A 42 ILE A 45 1 N HIS A 42 O MET A 139 SHEET 9 A 9 VAL A 15 GLN A 17 1 N GLN A 17 O ILE A 45 SHEET 1 B 8 TRP A 116 MET A 117 0 SHEET 2 B 8 THR A 92 VAL A 95 1 N ILE A 94 O MET A 117 SHEET 3 B 8 LEU A 218 LEU A 222 1 O ILE A 219 N VAL A 93 SHEET 4 B 8 GLU A 227 PHE A 231 -1 O ILE A 229 N ALA A 220 SHEET 5 B 8 VAL A 190 SER A 195 1 N LEU A 193 O SER A 230 SHEET 6 B 8 LYS A 155 THR A 161 1 N LEU A 160 O CYS A 192 SHEET 7 B 8 THR A 138 MET A 146 -1 N MET A 146 O LYS A 155 SHEET 8 B 8 ARG A 175 MET A 176 -1 O ARG A 175 N SER A 145 SHEET 1 C 5 LEU A 66 ARG A 68 0 SHEET 2 C 5 TRP A 76 ALA A 78 -1 O LEU A 77 N ARG A 67 SHEET 3 C 5 ILE A 356 THR A 358 1 O PHE A 357 N TRP A 76 SHEET 4 C 5 ARG A 405 PRO A 409 -1 O ARG A 405 N THR A 358 SHEET 5 C 5 GLY A 331 VAL A 335 -1 N PHE A 332 O THR A 408 SHEET 1 D 7 LYS A 304 GLY A 309 0 SHEET 2 D 7 LEU A 266 THR A 271 -1 N THR A 271 O LYS A 304 SHEET 3 D 7 LYS A 277 ALA A 283 -1 O LYS A 278 N ILE A 270 SHEET 4 D 7 VAL A 426 PHE A 433 1 O GLY A 430 N ALA A 281 SHEET 5 D 7 LEU A 323 ILE A 326 -1 N ALA A 325 O VAL A 426 SHEET 6 D 7 ALA A 313 PHE A 317 -1 N TRP A 314 O ILE A 326 SHEET 7 D 7 LEU A 261 GLU A 263 -1 N GLU A 263 O ALA A 313 SHEET 1 E 6 LYS A 304 GLY A 309 0 SHEET 2 E 6 LEU A 266 THR A 271 -1 N THR A 271 O LYS A 304 SHEET 3 E 6 LYS A 277 ALA A 283 -1 O LYS A 278 N ILE A 270 SHEET 4 E 6 VAL A 426 PHE A 433 1 O GLY A 430 N ALA A 281 SHEET 5 E 6 LYS A 510 VAL A 514 1 O PHE A 512 N PHE A 433 SHEET 6 E 6 VAL A 444 GLU A 446 -1 N TYR A 445 O HIS A 513 SHEET 1 F 4 VAL A 368 TYR A 369 0 SHEET 2 F 4 ALA A 361 THR A 363 -1 N ALA A 361 O TYR A 369 SHEET 3 F 4 ILE A 383 THR A 384 -1 O THR A 384 N GLU A 362 SHEET 4 F 4 GLU A 390 TRP A 391 -1 O TRP A 391 N ILE A 383 SHEET 1 G 2 ARG A 461 GLU A 463 0 SHEET 2 G 2 ILE A 475 HIS A 477 -1 O MET A 476 N SER A 462 SHEET 1 H 2 THR A 550 THR A 553 0 SHEET 2 H 2 GLY A 556 PRO A 559 -1 O ILE A 558 N LYS A 551 LINK NZ LYS A 244 MN MN A 701 1555 1555 2.32 LINK NE2 HIS A 264 MN MN A 701 1555 1555 2.22 LINK OD1 ASP A 311 MN MN A 701 1555 1555 2.19 LINK MN MN A 701 O HOH A 732 1555 1555 2.20 LINK MN MN A 701 O HOH A 797 1555 1555 2.24 LINK MN MN A 701 O HOH A 804 1555 1555 2.25 LINK NA NA A 702 O2 PEP A 703 1555 1555 2.76 LINK NA NA A 702 O1P PEP A 703 1555 1555 2.94 LINK NA NA A 702 O HOH A 813 1555 1555 2.68 LINK NA NA A 702 O HOH A 861 1555 1555 2.96 CISPEP 1 LEU A 200 PRO A 201 0 11.57 SITE 1 AC1 6 LYS A 244 HIS A 264 ASP A 311 HOH A 732 SITE 2 AC1 6 HOH A 797 HOH A 804 SITE 1 AC2 3 PEP A 703 HOH A 813 HOH A 861 SITE 1 AC3 12 ALA A 86 ARG A 87 TYR A 235 GLY A 236 SITE 2 AC3 12 GLY A 237 LYS A 244 ASN A 403 ARG A 405 SITE 3 AC3 12 NA A 702 HOH A 732 HOH A 797 HOH A 819 SITE 1 AC4 5 TRP A 450 PRO A 509 LYS A 510 ILE A 511 SITE 2 AC4 5 HOH A 824 SITE 1 AC5 5 TYR A 72 GLN A 352 VAL A 368 ILE A 373 SITE 2 AC5 5 HOH A 746 CRYST1 45.251 60.679 62.032 88.69 70.00 72.54 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022099 -0.006952 -0.008694 0.00000 SCALE2 0.000000 0.017276 0.001541 0.00000 SCALE3 0.000000 0.000000 0.017223 0.00000