HEADER SIGNALING PROTEIN, TRANSFERASE 30-NOV-01 1KHT TITLE ADENYLATE KINASE FROM METHANOCOCCUS VOLTAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ATP-AMP TRANSPHOSPHORYLASE; COMPND 5 EC: 2.7.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS VOLTAE; SOURCE 3 ORGANISM_TAXID: 2188; SOURCE 4 GENE: ADK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS KINASE, PHOSPHOTRANSFERASE, SIGNALING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.R.CRISWELL,J.KONISKY,G.N.PHILLIPS JR. REVDAT 5 16-AUG-23 1KHT 1 REMARK REVDAT 4 28-SEP-16 1KHT 1 REMARK VERSN REVDAT 3 24-FEB-09 1KHT 1 VERSN REVDAT 2 22-MAR-05 1KHT 1 JRNL REMARK REVDAT 1 03-JUN-03 1KHT 0 JRNL AUTH A.R.CRISWELL,E.BAE,B.STEC,J.KONISKY,G.N.PHILLIPS JR. JRNL TITL STRUCTURES OF THERMOPHILIC AND MESOPHILIC ADENYLATE KINASES JRNL TITL 2 FROM THE GENUS METHANOCOCCUS JRNL REF J.MOL.BIOL. V. 330 1087 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12860130 JRNL DOI 10.1016/S0022-2836(03)00655-7 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 961139.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 39001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3917 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5915 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 665 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4419 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.210 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.420 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.240 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 34.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ADENOSINE.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : AMP.TOPOLOGY REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000014977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.037 REMARK 200 MONOCHROMATOR : BEND CYLINDRICAL GE(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CONICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39038 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NKS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP AT 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.25000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 100.25000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 100.25000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 100.25000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 100.25000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.25000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 100.25000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.25000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 100.25000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 100.25000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 100.25000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 100.25000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 100.25000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 100.25000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 100.25000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 100.25000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 100.25000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 100.25000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 100.25000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 100.25000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 100.25000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 100.25000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 100.25000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 100.25000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 100.25000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 100.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 200.50000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG C 176 NH2 ARG C 176 3556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 36.09 -71.30 REMARK 500 GLU A 30 -3.88 -151.89 REMARK 500 PRO A 106 170.19 -57.94 REMARK 500 ARG A 140 54.49 -146.31 REMARK 500 ASN A 175 79.66 -118.10 REMARK 500 THR B 91 -150.00 -155.94 REMARK 500 SER B 107 -59.43 -28.54 REMARK 500 ASN B 114 69.41 38.21 REMARK 500 THR B 123 -178.62 -172.65 REMARK 500 LEU B 142 62.78 25.95 REMARK 500 ASN B 175 79.15 -117.48 REMARK 500 LYS C 29 3.55 -67.13 REMARK 500 MET C 43 67.23 -115.73 REMARK 500 PHE C 44 -28.64 -170.26 REMARK 500 ASP C 57 48.69 -88.48 REMARK 500 GLN C 58 14.73 -165.23 REMARK 500 LYS C 61 -8.02 -141.79 REMARK 500 ASP C 63 125.11 167.12 REMARK 500 ALA C 82 4.94 -69.00 REMARK 500 GLU C 84 -71.02 -138.74 REMARK 500 THR C 91 -157.21 -148.09 REMARK 500 SER C 107 -51.74 -29.44 REMARK 500 ARG C 140 24.10 -167.56 REMARK 500 LEU C 142 1.09 176.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 2193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 3193 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KI9 RELATED DB: PDB REMARK 900 ADENYLATE KINASE FROM METHANOCOCCUS THERMOLITHOTROPHICUS DBREF 1KHT A 1 192 UNP P43411 KADA_METVO 1 192 DBREF 1KHT B 1 192 UNP P43411 KADA_METVO 1 192 DBREF 1KHT C 1 192 UNP P43411 KADA_METVO 1 192 SEQRES 1 A 192 MET LYS ASN LYS VAL VAL VAL VAL THR GLY VAL PRO GLY SEQRES 2 A 192 VAL GLY SER THR THR SER SER GLN LEU ALA MET ASP ASN SEQRES 3 A 192 LEU ARG LYS GLU GLY VAL ASN TYR LYS MET VAL SER PHE SEQRES 4 A 192 GLY SER VAL MET PHE GLU VAL ALA LYS GLU GLU ASN LEU SEQRES 5 A 192 VAL SER ASP ARG ASP GLN MET ARG LYS MET ASP PRO GLU SEQRES 6 A 192 THR GLN LYS ARG ILE GLN LYS MET ALA GLY ARG LYS ILE SEQRES 7 A 192 ALA GLU MET ALA LYS GLU SER PRO VAL ALA VAL ASP THR SEQRES 8 A 192 HIS SER THR VAL SER THR PRO LYS GLY TYR LEU PRO GLY SEQRES 9 A 192 LEU PRO SER TRP VAL LEU ASN GLU LEU ASN PRO ASP LEU SEQRES 10 A 192 ILE ILE VAL VAL GLU THR THR GLY ASP GLU ILE LEU MET SEQRES 11 A 192 ARG ARG MET SER ASP GLU THR ARG VAL ARG ASP LEU ASP SEQRES 12 A 192 THR ALA SER THR ILE GLU GLN HIS GLN PHE MET ASN ARG SEQRES 13 A 192 CYS ALA ALA MET SER TYR GLY VAL LEU THR GLY ALA THR SEQRES 14 A 192 VAL LYS ILE VAL GLN ASN ARG ASN GLY LEU LEU ASP GLN SEQRES 15 A 192 ALA VAL GLU GLU LEU THR ASN VAL LEU ARG SEQRES 1 B 192 MET LYS ASN LYS VAL VAL VAL VAL THR GLY VAL PRO GLY SEQRES 2 B 192 VAL GLY SER THR THR SER SER GLN LEU ALA MET ASP ASN SEQRES 3 B 192 LEU ARG LYS GLU GLY VAL ASN TYR LYS MET VAL SER PHE SEQRES 4 B 192 GLY SER VAL MET PHE GLU VAL ALA LYS GLU GLU ASN LEU SEQRES 5 B 192 VAL SER ASP ARG ASP GLN MET ARG LYS MET ASP PRO GLU SEQRES 6 B 192 THR GLN LYS ARG ILE GLN LYS MET ALA GLY ARG LYS ILE SEQRES 7 B 192 ALA GLU MET ALA LYS GLU SER PRO VAL ALA VAL ASP THR SEQRES 8 B 192 HIS SER THR VAL SER THR PRO LYS GLY TYR LEU PRO GLY SEQRES 9 B 192 LEU PRO SER TRP VAL LEU ASN GLU LEU ASN PRO ASP LEU SEQRES 10 B 192 ILE ILE VAL VAL GLU THR THR GLY ASP GLU ILE LEU MET SEQRES 11 B 192 ARG ARG MET SER ASP GLU THR ARG VAL ARG ASP LEU ASP SEQRES 12 B 192 THR ALA SER THR ILE GLU GLN HIS GLN PHE MET ASN ARG SEQRES 13 B 192 CYS ALA ALA MET SER TYR GLY VAL LEU THR GLY ALA THR SEQRES 14 B 192 VAL LYS ILE VAL GLN ASN ARG ASN GLY LEU LEU ASP GLN SEQRES 15 B 192 ALA VAL GLU GLU LEU THR ASN VAL LEU ARG SEQRES 1 C 192 MET LYS ASN LYS VAL VAL VAL VAL THR GLY VAL PRO GLY SEQRES 2 C 192 VAL GLY SER THR THR SER SER GLN LEU ALA MET ASP ASN SEQRES 3 C 192 LEU ARG LYS GLU GLY VAL ASN TYR LYS MET VAL SER PHE SEQRES 4 C 192 GLY SER VAL MET PHE GLU VAL ALA LYS GLU GLU ASN LEU SEQRES 5 C 192 VAL SER ASP ARG ASP GLN MET ARG LYS MET ASP PRO GLU SEQRES 6 C 192 THR GLN LYS ARG ILE GLN LYS MET ALA GLY ARG LYS ILE SEQRES 7 C 192 ALA GLU MET ALA LYS GLU SER PRO VAL ALA VAL ASP THR SEQRES 8 C 192 HIS SER THR VAL SER THR PRO LYS GLY TYR LEU PRO GLY SEQRES 9 C 192 LEU PRO SER TRP VAL LEU ASN GLU LEU ASN PRO ASP LEU SEQRES 10 C 192 ILE ILE VAL VAL GLU THR THR GLY ASP GLU ILE LEU MET SEQRES 11 C 192 ARG ARG MET SER ASP GLU THR ARG VAL ARG ASP LEU ASP SEQRES 12 C 192 THR ALA SER THR ILE GLU GLN HIS GLN PHE MET ASN ARG SEQRES 13 C 192 CYS ALA ALA MET SER TYR GLY VAL LEU THR GLY ALA THR SEQRES 14 C 192 VAL LYS ILE VAL GLN ASN ARG ASN GLY LEU LEU ASP GLN SEQRES 15 C 192 ALA VAL GLU GLU LEU THR ASN VAL LEU ARG HET AMP B2193 23 HET AMP C3193 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 4 AMP 2(C10 H14 N5 O7 P) FORMUL 6 HOH *179(H2 O) HELIX 1 1 GLY A 15 LYS A 29 1 15 HELIX 2 2 PHE A 39 GLU A 50 1 12 HELIX 3 3 ASP A 55 ARG A 60 5 6 HELIX 4 4 ASP A 63 LYS A 83 1 21 HELIX 5 5 PRO A 106 ASN A 114 1 9 HELIX 6 6 THR A 124 SER A 134 1 11 HELIX 7 7 THR A 144 GLY A 167 1 24 HELIX 8 8 LEU A 179 ARG A 192 1 14 HELIX 9 9 GLY B 15 LYS B 29 1 15 HELIX 10 10 PHE B 39 GLU B 50 1 12 HELIX 11 11 ASP B 55 MET B 62 5 8 HELIX 12 12 ASP B 63 ALA B 82 1 20 HELIX 13 13 PRO B 106 ASN B 114 1 9 HELIX 14 14 THR B 124 ASP B 135 1 12 HELIX 15 15 THR B 144 GLY B 167 1 24 HELIX 16 16 LEU B 179 ARG B 192 1 14 HELIX 17 17 GLY C 15 LYS C 29 1 15 HELIX 18 18 PHE C 39 MET C 43 1 5 HELIX 19 19 GLN C 58 MET C 62 5 5 HELIX 20 20 ASP C 63 LYS C 68 1 6 HELIX 21 21 LYS C 68 ALA C 82 1 15 HELIX 22 22 PRO C 106 ASN C 114 1 9 HELIX 23 23 THR C 124 MET C 133 1 10 HELIX 24 24 THR C 144 GLY C 167 1 24 HELIX 25 25 LEU C 179 ARG C 192 1 14 SHEET 1 A 5 LYS A 35 SER A 38 0 SHEET 2 A 5 VAL A 87 ASP A 90 1 O ASP A 90 N VAL A 37 SHEET 3 A 5 VAL A 5 THR A 9 1 N VAL A 6 O VAL A 89 SHEET 4 A 5 LEU A 117 GLU A 122 1 O ILE A 119 N VAL A 7 SHEET 5 A 5 THR A 169 GLN A 174 1 O LYS A 171 N VAL A 120 SHEET 1 B 2 THR A 94 THR A 97 0 SHEET 2 B 2 GLY A 100 PRO A 103 -1 O GLY A 100 N THR A 97 SHEET 1 C 5 LYS B 35 SER B 38 0 SHEET 2 C 5 VAL B 87 THR B 91 1 O ASP B 90 N VAL B 37 SHEET 3 C 5 VAL B 5 THR B 9 1 N VAL B 6 O VAL B 89 SHEET 4 C 5 LEU B 117 GLU B 122 1 O ILE B 119 N VAL B 7 SHEET 5 C 5 THR B 169 GLN B 174 1 O LYS B 171 N VAL B 120 SHEET 1 D 2 THR B 94 THR B 97 0 SHEET 2 D 2 GLY B 100 PRO B 103 -1 O LEU B 102 N VAL B 95 SHEET 1 E 5 LYS C 35 SER C 38 0 SHEET 2 E 5 VAL C 87 ASP C 90 1 O ASP C 90 N VAL C 37 SHEET 3 E 5 VAL C 5 GLY C 10 1 N VAL C 6 O VAL C 89 SHEET 4 E 5 LEU C 117 GLU C 122 1 O ILE C 119 N VAL C 7 SHEET 5 E 5 THR C 169 GLN C 174 1 O LYS C 171 N VAL C 120 SHEET 1 F 2 THR C 94 THR C 97 0 SHEET 2 F 2 GLY C 100 PRO C 103 -1 O LEU C 102 N VAL C 95 SITE 1 AC1 15 PHE B 39 GLY B 40 MET B 43 ARG B 56 SITE 2 AC1 15 ARG B 60 GLN B 71 THR B 91 HIS B 92 SITE 3 AC1 15 VAL B 95 GLY B 104 ARG B 138 HOH B2197 SITE 4 AC1 15 HOH B2201 HOH B2274 HOH B2281 SITE 1 AC2 12 PHE C 39 MET C 43 ARG C 56 ARG C 60 SITE 2 AC2 12 GLN C 71 THR C 91 HIS C 92 VAL C 95 SITE 3 AC2 12 GLY C 104 ARG C 138 HOH C3213 HOH C3214 CRYST1 200.500 200.500 200.500 90.00 90.00 90.00 I 2 3 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004988 0.00000