HEADER PHOSPHOTRANSFERASE 18-MAY-98 1KI5 OBSLTE 02-MAR-99 1KI5 2KI5 TITLE CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX TITLE 2 VIRUS TYPE I COMPLEXED WITH ACICLOVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TK; COMPND 5 EC: 2.7.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERPES SIMPLEX VIRUS TYPE I; SOURCE 3 ORGANISM_COMMON: HSV-I; SOURCE 4 STRAIN: 17; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SY211; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT7\:HSVTK; SOURCE 8 EXPRESSION_SYSTEM_GENE: TK KEYWDS PHOSPHOTRANSFERASE, THYMIDINE KINASE, VIRIDAE, DS-DNA KEYWDS 2 ENVELOPED VIRUSES, HERPESVIRIDAE, ALPHAHERPESVIRINAE, KEYWDS 3 ANTIVIRAL DRUG ACICLOVIR EXPDTA X-RAY DIFFRACTION AUTHOR J.N.CHAMPNESS,M.S.BENNETT,F.WIEN,R.VISSE,W.C.SUMMERS, AUTHOR 2 M.R.SANDERSON REVDAT 3 02-MAR-99 1KI5 1 OBSLTE REVDAT 2 13-JAN-99 1KI5 1 COMPND REMARK TITLE HEADER REVDAT 2 2 1 SOURCE JRNL KEYWDS REVDAT 1 02-DEC-98 1KI5 0 JRNL AUTH J.N.CHAMPNESS,M.S.BENNETT,F.WIEN,R.VISSE, JRNL AUTH 2 W.C.SUMMERS,P.HERDEWIJN,E.DE CLERQ,T.OSTROWSKI, JRNL AUTH 3 R.L.JARVEST,M.R.SANDERSON JRNL TITL EXPLORING THE ACTIVE SITE OF HERPES SIMPLEX VIRUS JRNL TITL 2 TYPE-1 THYMIDINE KINASE BY X-RAY CRYSTALLOGRAPHY JRNL TITL 3 OF COMPLEXES WITH ACICLOVIR AND OTHER LIGANDS JRNL REF PROTEINS: STRUCT.,FUNCT., V. 32 350 1998 JRNL REF 2 GENET. JRNL REFN ASTM PSFGEY US ISSN 0887-3585 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.P.TUNG,J.RESPASS,W.C.SUMMERS REMARK 1 TITL 3'-AMINO THYMIDINE AFFINITY MATRIX FOR THE REMARK 1 TITL 2 PURIFICATION OF HERPES SIMPLEX VIRUS THYMIDINE REMARK 1 TITL 3 KINASE REMARK 1 REF YALE J.BIOL.MED. V. 69 495 1996 REMARK 1 REFN ASTM YJBMAU US ISSN 0044-0086 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.G.BROWN,R.VISSE,G.SANDHU,A.DAVIES,P.J.RIZKALLAH, REMARK 1 AUTH 2 C.MELITZ,W.C.SUMMERS,M.R.SANDERSON REMARK 1 TITL CRYSTAL STRUCTURES OF THE THYMIDINE KINASE FROM REMARK 1 TITL 2 HERPES SIMPLEX VIRUS TYPE-1 IN COMPLEX WITH REMARK 1 TITL 3 DEOXYTHYMIDINE AND GANCICLOVIR REMARK 1 REF NAT.STRUCT.BIOL. V. 2 876 1995 REMARK 1 REFN ASTM NSBIEW US ISSN 1072-8368 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.J.MCGEOCH,M.A.DALRYMPLE,A.J.DAVISON,A.DOLAN, REMARK 1 AUTH 2 M.C.FRAME,D.MCNAB,L.J.PERRY,J.E.SCOTT,P.TAYLOR REMARK 1 TITL THE COMPLETE DNA SEQUENCE OF THE LONG UNIQUE REMARK 1 TITL 2 REGION IN THE GENOME OF HERPES SIMPLEX VIRUS TYPE 1 REMARK 1 REF J.GEN.VIROL. V. 69 1531 1988 REMARK 1 REFN ASTM JGVIAY US ISSN 0022-1317 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.R.SANDERSON,P.S.FREEMONT,H.M.MURTHY,J.F.KRANE, REMARK 1 AUTH 2 W.C.SUMMERS,T.A.STEITZ REMARK 1 TITL PURIFICATION AND CRYSTALLIZATION OF THYMIDINE REMARK 1 TITL 2 KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 REMARK 1 REF J.MOL.BIOL. V. 202 917 1988 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH M.J.WAGNER,J.A.SHARP,W.C.SUMMERS REMARK 1 TITL NUCLEOTIDE SEQUENCE OF THE THYMIDINE KINASE GENE REMARK 1 TITL 2 OF HERPES SIMPLEX VIRUS TYPE 1 REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 78 1441 1981 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1F REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.200 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 73.0 REMARK 3 NUMBER OF REFLECTIONS : 21523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2139 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 22.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 569 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 60 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 2.09 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.24 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.95 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : INDIVIDUAL B-FACTOR REFT. REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.500 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.000 ; 4.000 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : 1KIN_PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : 1KIN_PARAM19.SOL REMARK 3 PARAMETER FILE 3 : 1KIN_PARNAH1E.DNA REMARK 3 PARAMETER FILE 4 : 1KIN_SO4.PAR REMARK 3 PARAMETER FILE 5 : 1KIN_GAN.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : 1KIN_SO4.TOP REMARK 3 TOPOLOGY FILE 2 : 1KIN_TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : 1KIN_TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 4 : ACY.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NCS RESTRAINTS NOT USED IN FINAL REMARK 3 CYCLES. REMARK 4 REMARK 4 1KI5 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 6 REMARK 6 IN C-TERMINAL PORTIONS OF MODELLED SEGMENTS, PEPTIDE REMARK 6 HAS BECOME SIGNIFICANTLY NON-PLANAR. REMARK 7 REMARK 7 SEVERAL RESIDUES HAD NO DENSITY PRESENT THAT COULD BE REMARK 7 MODELLED TO. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : AUG-1996 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OTWINOWSKI MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : R-AXIS IIC REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29945 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR + NCS IMPROVEMENT REMARK 200 AND SOLVENT FLATTENING FOR ORIGINAL NATIVE, 1KIN REMARK 200 SOFTWARE USED: RAVE AND SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 -X,Y,1/2-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 1/2+X,1/2+Y,Z REMARK 290 6555 1/2-X,1/2-Y,1/2+Z REMARK 290 7555 1/2-X,1/2+Y,1/2-Z REMARK 290 8555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.65000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.20000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.65000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.35000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.65000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.35000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 295 REMARK 295 NON-CRYSTALLOGRAPHIC SYMMETRY REMARK 295 THE TRANSFORMATIONS PRESENTED ON THE MTRIX RECORDS BELOW REMARK 295 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG ATOMS REMARK 295 IN THIS ENTRY. APPLYING THE APPROPRIATE MTRIX REMARK 295 TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL YIELD REMARK 295 APPROXIMATE COORDINATES FOR THE RESIDUES LISTED SECOND. REMARK 295 CHAIN IDENTIFIERS GIVEN AS "?" REFER TO CHAINS FOR WHICH REMARK 295 ATOMS ARE NOT FOUND IN THIS ENTRY. REMARK 295 REMARK 295 APPLIED TO TRANSFORMED TO REMARK 295 TRANSFORM CHAIN RESIDUES CHAIN RESIDUES RMSD REMARK 295 SSS REMARK 295 M 1 A 46 .. 374 B 46 .. 374 0.573 REMARK 295 REMARK 295 WHERE SSS -> COLUMNS 8-10 OF MTRIX RECORDS REMARK 295 REMARK 295 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ARG A 75 REMARK 465 ASP A 76 REMARK 465 HIS A 151 REMARK 465 THR A 265 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 ALA A 375 REMARK 465 ASN A 376 REMARK 465 SER B 74 REMARK 465 ARG B 75 REMARK 465 ASP B 76 REMARK 465 HIS B 151 REMARK 465 GLY B 264 REMARK 465 THR B 265 REMARK 465 ALA B 266 REMARK 465 VAL B 267 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 PRO B 274 REMARK 465 GLN B 275 REMARK 465 SER B 276 REMARK 465 ASN B 277 REMARK 465 ALA B 375 REMARK 465 ASN B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 46 CG SD CE REMARK 470 LEU A 72 CA C O CB CG CD1 CD2 REMARK 470 SER A 150 CA C O CB OG REMARK 470 GLY A 264 CA C O REMARK 470 PRO A 280 CG CD REMARK 470 MET B 46 CG SD CE REMARK 470 GLY B 73 CA C O REMARK 470 SER B 150 CA C O CB OG REMARK 470 SER B 263 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 182 SD MET A 182 CE -0.101 REMARK 500 MET A 322 CG MET A 322 SD -0.103 REMARK 500 PRO B 154 CB PRO B 154 CG 0.099 REMARK 500 MET B 182 SD MET B 182 CE -0.096 REMARK 500 MET B 347 SD MET B 347 CE -0.112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 91 N - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 ALA A 140 N - CA - C ANGL. DEV. = 11.6 DEGREES REMARK 500 GLY A 253 N - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 LEU A 291 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 CYS A 336 N - CA - C ANGL. DEV. =-11.3 DEGREES REMARK 500 LEU B 50 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 LEU B 304 CA - CB - CG ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 163 154.93 81.08 REMARK 500 ALA A 334 -35.49 76.98 REMARK 500 ALA B 93 -115.25 -151.03 REMARK 500 ARG B 163 156.48 101.09 REMARK 500 ARG B 220 162.24 96.18 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 546 DISTANCE = 6.09 ANGSTROMS REMARK 860 REMARK 860 CORRECTION AFTER RELEASE REMARK 860 DATE: 13-JAN-99 REMARK 860 MODID: 1KI5A REMARK 860 MODIFIED BY: PDB REMARK 860 DESCRIPTION: CONVERTED FROM LAYER 1 OR NDB TO LAYER 2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 1KI5 A SWS P03176 1 - 45 NOT IN ATOMS LIST REMARK 999 1KI5 A SWS P03176 375 - 376 NOT IN ATOMS LIST REMARK 999 1KI5 B SWS P03176 1 - 45 NOT IN ATOMS LIST REMARK 999 1KI5 B SWS P03176 375 - 376 NOT IN ATOMS LIST REMARK 999 REMARK 999 SEQUENCING OF THE CRYSTALLIZED MATERIAL SHOWED THE FIRST REMARK 999 10 RESIDUES TO BE MISSING. REMARK 999 REFERENCE: S.L. MCKNIGHT, THE NUCLEOTIDE SEQUENCE AND REMARK 999 TRANSCRIPTION MAP OF THE HERPES SIMPLEX VIRUS THYMIDINE REMARK 999 KINASE GENE. NUCLEIC ACID RESEARCH, 8, 5949-5964 (1980). REMARK 999 REMARK 999 CYS A 251, MCKNIGHT SEQUENCE FITS DENSITY. REMARK 999 SER B 321, MCKNIGHT SEQUENCE FITS DENSITY. REMARK 999 CYS A 251, MCKNIGHT SEQUENCE FITS DENSITY. REMARK 999 SER B 321, MCKNIGHT SEQUENCE FITS DENSITY. REMARK 999 REMARK 999 RESIDUES LISTED AS "NOT IN ATOMS LIST" AND "GAP IN PDB REMARK 999 ENTRY" REFER TO RESIDUES LACKING ANY DENSITY THAT COULD REMARK 999 BE MODELED. DBREF 1KI5 A 46 72 UNP P03176 KITH_HSV11 46 72 DBREF 1KI5 A 77 150 UNP P03176 KITH_HSV11 77 150 DBREF 1KI5 A 152 264 UNP P03176 KITH_HSV11 152 264 DBREF 1KI5 A 280 374 UNP P03176 KITH_HSV11 280 374 DBREF 1KI5 B 46 73 UNP P03176 KITH_HSV11 46 73 DBREF 1KI5 B 77 150 UNP P03176 KITH_HSV11 77 150 DBREF 1KI5 B 152 263 UNP P03176 KITH_HSV11 152 263 DBREF 1KI5 B 278 374 UNP P03176 KITH_HSV11 278 374 SEQADV 1KI5 A UNP P03176 GLY 73 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 SER 74 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 ARG 75 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 ASP 76 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 HIS 151 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 THR 265 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 ALA 266 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 VAL 267 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 PRO 268 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 PRO 269 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 GLN 270 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 GLY 271 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 ALA 272 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 GLU 273 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 PRO 274 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 GLN 275 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 SER 276 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 ASN 277 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 ALA 278 GAP IN PDB ENTRY SEQADV 1KI5 A UNP P03176 GLY 279 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 SER 74 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 ARG 75 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 ASP 76 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 HIS 151 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 GLY 264 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 THR 265 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 ALA 266 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 VAL 267 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 PRO 268 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 PRO 269 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 GLN 270 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 GLY 271 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 ALA 272 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 GLU 273 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 PRO 274 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 GLN 275 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 SER 276 GAP IN PDB ENTRY SEQADV 1KI5 B UNP P03176 ASN 277 GAP IN PDB ENTRY SEQRES 1 A 331 MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS SEQRES 2 A 331 GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA SEQRES 3 A 331 LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO SEQRES 4 A 331 MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE SEQRES 5 A 331 ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY SEQRES 6 A 331 GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER SEQRES 7 A 331 ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP SEQRES 8 A 331 ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SEQRES 9 A 331 SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP SEQRES 10 A 331 ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA SEQRES 11 A 331 ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU SEQRES 12 A 331 ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR SEQRES 13 A 331 ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE SEQRES 14 A 331 ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU SEQRES 15 A 331 ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY SEQRES 16 A 331 LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SEQRES 17 A 331 SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA SEQRES 18 A 331 VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY SEQRES 19 A 331 PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE SEQRES 20 A 331 ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR SEQRES 21 A 331 ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG SEQRES 22 A 331 LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SEQRES 23 A 331 SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SEQRES 24 A 331 SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER SEQRES 25 A 331 ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG SEQRES 26 A 331 GLU MET GLY GLU ALA ASN SEQRES 1 B 331 MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS SEQRES 2 B 331 GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA SEQRES 3 B 331 LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO SEQRES 4 B 331 MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE SEQRES 5 B 331 ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY SEQRES 6 B 331 GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER SEQRES 7 B 331 ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP SEQRES 8 B 331 ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SEQRES 9 B 331 SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP SEQRES 10 B 331 ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA SEQRES 11 B 331 ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU SEQRES 12 B 331 ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR SEQRES 13 B 331 ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE SEQRES 14 B 331 ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU SEQRES 15 B 331 ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY SEQRES 16 B 331 LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SEQRES 17 B 331 SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA SEQRES 18 B 331 VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY SEQRES 19 B 331 PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE SEQRES 20 B 331 ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR SEQRES 21 B 331 ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG SEQRES 22 B 331 LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SEQRES 23 B 331 SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SEQRES 24 B 331 SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER SEQRES 25 B 331 ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG SEQRES 26 B 331 GLU MET GLY GLU ALA ASN HET SO4 A 3 5 HET SO4 B 4 5 HET AC2 A 1 16 HETNAM SO4 SULFATE ION HETNAM AC2 9-HYROXYETHOXYMETHYLGUANINE FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 AC2 C8 H11 N5 O3 FORMUL 6 HOH *79(H2 O1) HELIX 1 1 LYS A 62 VAL A 70 1 9 HELIX 2 2 MET A 85 ARG A 89 1 5 HELIX 3 3 THR A 96 ASP A 108 1 13 HELIX 4 4 ALA A 114 PRO A 141 1 28 HELIX 5 5 ILE A 166 LEU A 169 1 4 HELIX 6 6 CYS A 171 LEU A 178 1 8 HELIX 7 7 PRO A 184 ALA A 192 1 9 HELIX 8 8 GLU A 210 LYS A 219 1 10 HELIX 9 9 LEU A 229 CYS A 251 1 23 HELIX 10 10 TRP A 255 ASP A 258 1 4 HELIX 11 11 ILE A 284 ASP A 286 5 3 HELIX 12 12 THR A 290 PHE A 292 5 3 HELIX 13 13 PRO A 295 LEU A 297 5 3 HELIX 14 14 ASN A 306 SER A 321 1 16 HELIX 15 15 GLY A 335 SER A 345 1 11 HELIX 16 16 SER A 357 MET A 372 1 16 HELIX 17 17 LYS B 62 ALA B 71 1 10 HELIX 18 18 MET B 85 ARG B 89 1 5 HELIX 19 19 THR B 96 GLN B 109 1 14 HELIX 20 20 ALA B 114 MET B 128 1 15 HELIX 21 21 MET B 130 LEU B 139 1 10 HELIX 22 22 PRO B 165 LEU B 169 1 5 HELIX 23 23 CYS B 171 LEU B 178 1 8 HELIX 24 24 PRO B 184 LEU B 193 1 10 HELIX 25 25 GLU B 210 LYS B 219 1 10 HELIX 26 26 LEU B 229 GLN B 250 1 22 HELIX 27 27 TRP B 255 GLN B 261 1 7 HELIX 28 28 ILE B 284 ASP B 286 5 3 HELIX 29 29 PHE B 289 LEU B 291 5 3 HELIX 30 30 ASN B 306 ARG B 320 1 15 HELIX 31 31 PRO B 333 GLY B 346 1 14 HELIX 32 32 PRO B 355 MET B 372 5 18 SHEET 1 A 5 HIS A 323 ASP A 328 0 SHEET 2 A 5 ASN A 202 ALA A 207 1 N ILE A 203 O HIS A 323 SHEET 3 A 5 LEU A 49 ILE A 54 1 N TYR A 53 O ASN A 202 SHEET 4 A 5 LEU A 157 ASP A 162 1 N LEU A 157 O LEU A 50 SHEET 5 A 5 ILE A 78 TYR A 80 1 N VAL A 79 O THR A 158 SHEET 1 B 5 HIS B 323 ASP B 328 0 SHEET 2 B 5 ASN B 202 ALA B 207 1 N ILE B 203 O HIS B 323 SHEET 3 B 5 LEU B 49 ILE B 54 1 N TYR B 53 O ASN B 202 SHEET 4 B 5 LEU B 157 PHE B 161 1 N LEU B 157 O LEU B 50 SHEET 5 B 5 ILE B 78 VAL B 81 1 N VAL B 79 O THR B 158 CISPEP 1 PRO A 153 PRO A 154 0 -0.41 CISPEP 2 PRO B 153 PRO B 154 0 0.02 CRYST1 113.300 116.700 108.400 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008826 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009225 0.00000 MTRIX1 1 -0.931080 0.315060 0.183900 27.82358 1 MTRIX2 1 0.313790 0.434560 0.844210 -1.52547 1 MTRIX3 1 0.186060 0.843740 -0.503480 -7.56507 1