HEADER TRANSFERASE 14-SEP-95 1KIN OBSLTE 20-MAY-98 1KIN 1KIM TITLE CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX TITLE 2 VIRUS TYPE I COMPLEXED WITH DEOXYTHYMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TK; COMPND 5 EC: 2.7.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERPES SIMPLEX VIRUS TYPE I; SOURCE 3 STRAIN: STRAIN 17; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: SY211; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PT7\:HSVTK; SOURCE 7 EXPRESSION_SYSTEM_GENE: TK KEYWDS TRANSFERASE, THYMIDINE KINASE, VIRIDAE, DS-DNA ENVELOPED KEYWDS 2 VIRUSES, HERPESVIRIDAE, ALPHAHERPESVIRIDAE EXPDTA X-RAY DIFFRACTION AUTHOR J.N.CHAMPNESS,M.S.BENNET,D.G.BROWN,R.VISSE,G.SANDHU, AUTHOR 2 A.DAVIES,P.J.RIZKALLAH,C.MELITZ,W.C.SUMMERS,M.R.SANDERSON REVDAT 1 12-MAR-97 1KIN 0 JRNL AUTH D.G.BROWN,R.VISSE,G.SANDHU,A.DAVIES,P.J.RIZKALLAH, JRNL AUTH 2 C.MELITZ,W.C.SUMMERS,M.R.SANDERSON JRNL TITL CRYSTAL STRUCTURES OF THE THYMIDINE KINASE FROM JRNL TITL 2 HERPES SIMPLEX VIRUS TYPE-1 IN COMPLEX WITH JRNL TITL 3 DEOXYTHYMIDINE AND GANCICLOVIR JRNL REF NAT.STRUCT.BIOL. V. 2 876 1995 JRNL REFN ASTM NSBIEW US ISSN 1072-8368 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SANDERSON,P.S.FREEMONT,H.M.MURTHY,J.F.KRANE, REMARK 1 AUTH 2 W.C.SUMMERS,T.A.STEITZ REMARK 1 TITL PURIFICATION AND CRYSTALLIZATION OF THYMIDINE REMARK 1 TITL 2 KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 REMARK 1 REF J.MOL.BIOL. V. 202 917 1988 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.J.MCGEOCH,M.A.DALRYMPLE,A.J.DAVISON,A.DOLAN, REMARK 1 AUTH 2 M.C.FRAME,D.MCNAB,L.J.PERRY,J.E.SCOTT,P.TAYLOR REMARK 1 TITL THE COMPLETE DNA SEQUENCE OF THE LONG UNIQUE REMARK 1 TITL 2 REGION IN THE GENOME OF HERPES SIMPLEX VIRUS TYPE 1 REMARK 1 REF J.GEN.VIROL. V. 69 1531 1988 REMARK 1 REFN ASTM JGVIAY US ISSN 0022-1317 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.J.WAGNER,J.A.SHARP,W.C.SUMMERS REMARK 1 TITL NUCLEOTIDE SEQUENCE OF THE THYMIDINE KINASE GENE REMARK 1 TITL 2 OF HERPES SIMPLEX VIRUS TYPE 1 REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 78 1441 1981 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 2.13 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : HSV1_PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : HSV1_PARAM19.SOL REMARK 3 PARAMETER FILE 3 : HSV1_PARNAH1E.DNA REMARK 3 PARAMETER FILE 4 : HSV1_SO4.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : HSV1_SO4.TOP REMARK 3 TOPOLOGY FILE 2 : HSV1_DT.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DATA IS 85.9 % COMPLETE TO 2.25 REMARK 3 ANGSTROMS. REMARK 4 REMARK 4 1KIN COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 6 REMARK 6 CONTINUOUS DENSITY WAS NOT DISCERNIBLE IN CERTAIN REGIONS REMARK 6 OF THE MAP. THESE ARE REPRESENTED BY CHAIN BREAKS WITH THE REMARK 6 FOLLOWING RESIDUES NOT MODELLED: REMARK 6 CHAIN A: 72-76,150-151,262-279. REMARK 6 CHAIN B: 73-76,150-151,263-277. REMARK 7 REMARK 7 SEQUENCING OF THE CRYSTALLIZED MATERIAL SHOWED THAT THE REMARK 7 FIRST 10 AMINO ACIDS WERE MISSING. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : APR-1996 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : R-AXIS-IIC REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS SOFTWARE REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 85.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 68.9 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 -X,Y,1/2-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 1/2+X,1/2+Y,Z REMARK 290 6555 1/2-X,1/2-Y,1/2+Z REMARK 290 7555 1/2-X,1/2+Y,1/2-Z REMARK 290 8555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.57500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.57500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.45500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.56500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.45500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.56500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.57500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.45500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.56500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.57500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.45500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.56500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 295 REMARK 295 NON-CRYSTALLOGRAPHIC SYMMETRY REMARK 295 THE TRANSFORMATIONS PRESENTED ON THE MTRIX RECORDS BELOW REMARK 295 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG ATOMS REMARK 295 IN THIS ENTRY. APPLYING THE APPROPRIATE MTRIX REMARK 295 TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL YIELD REMARK 295 APPROXIMATE COORDINATES FOR THE RESIDUES LISTED SECOND. REMARK 295 CHAIN IDENTIFIERS GIVEN AS "?" REFER TO CHAINS FOR WHICH REMARK 295 ATOMS ARE NOT FOUND IN THIS ENTRY. REMARK 295 REMARK 295 APPLIED TO TRANSFORMED TO REMARK 295 TRANSFORM CHAIN RESIDUES CHAIN RESIDUES RMSD REMARK 295 SSS REMARK 295 M 1 B 46 .. 374 A 46 .. 374 0.671 REMARK 295 REMARK 295 WHERE SSS -> COLUMNS 8-10 OF MTRIX RECORDS REMARK 295 REMARK 295 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 PHE A 13 REMARK 465 ASP A 14 REMARK 465 GLN A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 SER A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 HIS A 22 REMARK 465 ASN A 23 REMARK 465 ASN A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 LEU A 29 REMARK 465 ARG A 30 REMARK 465 PRO A 31 REMARK 465 ARG A 32 REMARK 465 ARG A 33 REMARK 465 GLN A 34 REMARK 465 GLN A 35 REMARK 465 LYS A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 GLU A 39 REMARK 465 VAL A 40 REMARK 465 ARG A 41 REMARK 465 LEU A 42 REMARK 465 GLU A 43 REMARK 465 GLN A 44 REMARK 465 LYS A 45 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ARG A 75 REMARK 465 ASP A 76 REMARK 465 HIS A 151 REMARK 465 SER A 263 REMARK 465 GLY A 264 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 ALA A 375 REMARK 465 ASN A 376 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 PHE B 13 REMARK 465 ASP B 14 REMARK 465 GLN B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 ARG B 18 REMARK 465 SER B 19 REMARK 465 ARG B 20 REMARK 465 GLY B 21 REMARK 465 HIS B 22 REMARK 465 ASN B 23 REMARK 465 ASN B 24 REMARK 465 ARG B 25 REMARK 465 ARG B 26 REMARK 465 THR B 27 REMARK 465 ALA B 28 REMARK 465 LEU B 29 REMARK 465 ARG B 30 REMARK 465 PRO B 31 REMARK 465 ARG B 32 REMARK 465 ARG B 33 REMARK 465 GLN B 34 REMARK 465 GLN B 35 REMARK 465 LYS B 36 REMARK 465 ALA B 37 REMARK 465 THR B 38 REMARK 465 GLU B 39 REMARK 465 VAL B 40 REMARK 465 ARG B 41 REMARK 465 LEU B 42 REMARK 465 GLU B 43 REMARK 465 GLN B 44 REMARK 465 LYS B 45 REMARK 465 SER B 74 REMARK 465 ARG B 75 REMARK 465 ASP B 76 REMARK 465 HIS B 151 REMARK 465 GLY B 264 REMARK 465 ALA B 265 REMARK 465 ALA B 266 REMARK 465 VAL B 267 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 PRO B 274 REMARK 465 GLN B 275 REMARK 465 SER B 276 REMARK 465 ASN B 277 REMARK 465 ALA B 375 REMARK 465 ASN B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 46 CG SD CE REMARK 470 LEU A 72 CA C O CB CG CD1 CD2 REMARK 470 SER A 150 CA C O CB OG REMARK 470 LEU A 262 CA C O CB CG CD1 CD2 REMARK 470 PRO A 280 CG CD REMARK 470 MET B 46 CG SD CE REMARK 470 GLY B 73 CA C O REMARK 470 SER B 150 CA C O CB OG REMARK 470 SER B 263 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 153 CB PRO B 153 CG 0.145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 90 N - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 PRO A 153 C - N - CA ANGL. DEV. = 13.8 DEGREES REMARK 500 ALA B 140 N - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 PRO B 154 C - N - CA ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG B 220 N - CA - C ANGL. DEV. =-12.7 DEGREES REMARK 500 GLY B 252 N - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 GLY B 302 N - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 LEU B 304 CA - CB - CG ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 163 164.68 91.36 REMARK 500 ALA A 334 -55.24 71.77 REMARK 500 ARG B 163 160.46 90.82 REMARK 500 ARG B 220 131.91 101.76 REMARK 850 REMARK 850 CORRECTION BEFORE RELEASE REMARK 850 ORIGINAL DEPOSITION REVISED PRIOR TO RELEASE REMARK 850 DATE REVISED: 30-AUG-1996 TRACKING NUMBER: T7146 REMARK 999 REMARK 999 SEQUENCE REMARK 999 1KIN A SWS P03176 1 - 45 NOT IN ATOMS LIST REMARK 999 1KIN A SWS P03176 375 - 376 NOT IN ATOMS LIST REMARK 999 1KIN B SWS P03176 1 - 45 NOT IN ATOMS LIST REMARK 999 1KIN B SWS P03176 375 - 376 NOT IN ATOMS LIST REMARK 999 REMARK 999 REFERENCE: S.L.MCKNIGHT, THE NUCLEOTIDE SEQUENCE AND REMARK 999 TRANSCRIPTION MAP OF THE HERPES SIMPLEX VIRUS THYMIDINE REMARK 999 KINASE GENE, NUCLEIC ACIDS RESEARCH, 8: 5949-5964. REMARK 999 THE DENSITY MAPS AT 251 AND 321 VINDICATE THE MCKNIGHT REMARK 999 SEQUENCE. DBREF 1KIN A 46 72 UNP P03176 KITH_HSV11 46 72 DBREF 1KIN A 77 150 UNP P03176 KITH_HSV11 77 150 DBREF 1KIN A 152 262 UNP P03176 KITH_HSV11 152 262 DBREF 1KIN A 280 374 UNP P03176 KITH_HSV11 280 374 DBREF 1KIN B 46 73 UNP P03176 KITH_HSV11 46 73 DBREF 1KIN B 77 150 UNP P03176 KITH_HSV11 77 150 DBREF 1KIN B 152 263 UNP P03176 KITH_HSV11 152 263 DBREF 1KIN B 278 374 UNP P03176 KITH_HSV11 278 374 SEQADV 1KIN A UNP P03176 GLY 73 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 SER 74 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 ARG 75 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 ASP 76 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 HIS 151 GAP IN PDB ENTRY SEQADV 1KIN CYS A 251 UNP P03176 GLY 251 CONFLICT SEQADV 1KIN A UNP P03176 SER 263 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 GLY 264 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 ALA 265 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 ALA 266 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 VAL 267 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 PRO 268 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 PRO 269 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 GLN 270 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 GLY 271 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 ALA 272 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 GLU 273 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 PRO 274 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 GLN 275 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 SER 276 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 ASN 277 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 ALA 278 GAP IN PDB ENTRY SEQADV 1KIN A UNP P03176 GLY 279 GAP IN PDB ENTRY SEQADV 1KIN SER A 321 UNP P03176 PRO 321 CONFLICT SEQADV 1KIN B UNP P03176 SER 74 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 ARG 75 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 ASP 76 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 HIS 151 GAP IN PDB ENTRY SEQADV 1KIN CYS B 251 UNP P03176 GLY 251 CONFLICT SEQADV 1KIN B UNP P03176 GLY 264 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 ALA 265 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 ALA 266 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 VAL 267 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 PRO 268 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 PRO 269 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 GLN 270 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 GLY 271 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 ALA 272 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 GLU 273 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 PRO 274 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 GLN 275 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 SER 276 GAP IN PDB ENTRY SEQADV 1KIN B UNP P03176 ASN 277 GAP IN PDB ENTRY SEQADV 1KIN SER B 321 UNP P03176 PRO 321 CONFLICT SEQRES 1 A 366 SER ALA PHE ASP GLN ALA ALA ARG SER ARG GLY HIS ASN SEQRES 2 A 366 ASN ARG ARG THR ALA LEU ARG PRO ARG ARG GLN GLN LYS SEQRES 3 A 366 ALA THR GLU VAL ARG LEU GLU GLN LYS MET PRO THR LEU SEQRES 4 A 366 LEU ARG VAL TYR ILE ASP GLY PRO HIS GLY MET GLY LYS SEQRES 5 A 366 THR THR THR THR GLN LEU LEU VAL ALA LEU GLY SER ARG SEQRES 6 A 366 ASP ASP ILE VAL TYR VAL PRO GLU PRO MET THR TYR TRP SEQRES 7 A 366 ARG VAL LEU GLY ALA SER GLU THR ILE ALA ASN ILE TYR SEQRES 8 A 366 THR THR GLN HIS ARG LEU ASP GLN GLY GLU ILE SER ALA SEQRES 9 A 366 GLY ASP ALA ALA VAL VAL MET THR SER ALA GLN ILE THR SEQRES 10 A 366 MET GLY MET PRO TYR ALA VAL THR ASP ALA VAL LEU ALA SEQRES 11 A 366 PRO HIS ILE GLY GLY GLU ALA GLY SER SER HIS ALA PRO SEQRES 12 A 366 PRO PRO ALA LEU THR LEU ILE PHE ASP ARG HIS PRO ILE SEQRES 13 A 366 ALA ALA LEU LEU CYS TYR PRO ALA ALA ARG TYR LEU MET SEQRES 14 A 366 GLY SER MET THR PRO GLN ALA VAL LEU ALA PHE VAL ALA SEQRES 15 A 366 LEU ILE PRO PRO THR LEU PRO GLY THR ASN ILE VAL LEU SEQRES 16 A 366 GLY ALA LEU PRO GLU ASP ARG HIS ILE ASP ARG LEU ALA SEQRES 17 A 366 LYS ARG GLN ARG PRO GLY GLU ARG LEU ASP LEU ALA MET SEQRES 18 A 366 LEU ALA ALA ILE ARG ARG VAL TYR GLY LEU LEU ALA ASN SEQRES 19 A 366 THR VAL ARG TYR LEU GLN CYS GLY GLY SER TRP ARG GLU SEQRES 20 A 366 ASP TRP GLY GLN LEU SER GLY ALA ALA VAL PRO PRO GLN SEQRES 21 A 366 GLY ALA GLU PRO GLN SER ASN ALA GLY PRO ARG PRO HIS SEQRES 22 A 366 ILE GLY ASP THR LEU PHE THR LEU PHE ARG ALA PRO GLU SEQRES 23 A 366 LEU LEU ALA PRO ASN GLY ASP LEU TYR ASN VAL PHE ALA SEQRES 24 A 366 TRP ALA LEU ASP VAL LEU ALA LYS ARG LEU ARG SER MET SEQRES 25 A 366 HIS VAL PHE ILE LEU ASP TYR ASP GLN SER PRO ALA GLY SEQRES 26 A 366 CYS ARG ASP ALA LEU LEU GLN LEU THR SER GLY MET VAL SEQRES 27 A 366 GLN THR HIS VAL THR THR PRO GLY SER ILE PRO THR ILE SEQRES 28 A 366 CYS ASP LEU ALA ARG THR PHE ALA ARG GLU MET GLY GLU SEQRES 29 A 366 ALA ASN SEQRES 1 B 366 SER ALA PHE ASP GLN ALA ALA ARG SER ARG GLY HIS ASN SEQRES 2 B 366 ASN ARG ARG THR ALA LEU ARG PRO ARG ARG GLN GLN LYS SEQRES 3 B 366 ALA THR GLU VAL ARG LEU GLU GLN LYS MET PRO THR LEU SEQRES 4 B 366 LEU ARG VAL TYR ILE ASP GLY PRO HIS GLY MET GLY LYS SEQRES 5 B 366 THR THR THR THR GLN LEU LEU VAL ALA LEU GLY SER ARG SEQRES 6 B 366 ASP ASP ILE VAL TYR VAL PRO GLU PRO MET THR TYR TRP SEQRES 7 B 366 ARG VAL LEU GLY ALA SER GLU THR ILE ALA ASN ILE TYR SEQRES 8 B 366 THR THR GLN HIS ARG LEU ASP GLN GLY GLU ILE SER ALA SEQRES 9 B 366 GLY ASP ALA ALA VAL VAL MET THR SER ALA GLN ILE THR SEQRES 10 B 366 MET GLY MET PRO TYR ALA VAL THR ASP ALA VAL LEU ALA SEQRES 11 B 366 PRO HIS ILE GLY GLY GLU ALA GLY SER SER HIS ALA PRO SEQRES 12 B 366 PRO PRO ALA LEU THR LEU ILE PHE ASP ARG HIS PRO ILE SEQRES 13 B 366 ALA ALA LEU LEU CYS TYR PRO ALA ALA ARG TYR LEU MET SEQRES 14 B 366 GLY SER MET THR PRO GLN ALA VAL LEU ALA PHE VAL ALA SEQRES 15 B 366 LEU ILE PRO PRO THR LEU PRO GLY THR ASN ILE VAL LEU SEQRES 16 B 366 GLY ALA LEU PRO GLU ASP ARG HIS ILE ASP ARG LEU ALA SEQRES 17 B 366 LYS ARG GLN ARG PRO GLY GLU ARG LEU ASP LEU ALA MET SEQRES 18 B 366 LEU ALA ALA ILE ARG ARG VAL TYR GLY LEU LEU ALA ASN SEQRES 19 B 366 THR VAL ARG TYR LEU GLN CYS GLY GLY SER TRP ARG GLU SEQRES 20 B 366 ASP TRP GLY GLN LEU SER GLY ALA ALA VAL PRO PRO GLN SEQRES 21 B 366 GLY ALA GLU PRO GLN SER ASN ALA GLY PRO ARG PRO HIS SEQRES 22 B 366 ILE GLY ASP THR LEU PHE THR LEU PHE ARG ALA PRO GLU SEQRES 23 B 366 LEU LEU ALA PRO ASN GLY ASP LEU TYR ASN VAL PHE ALA SEQRES 24 B 366 TRP ALA LEU ASP VAL LEU ALA LYS ARG LEU ARG SER MET SEQRES 25 B 366 HIS VAL PHE ILE LEU ASP TYR ASP GLN SER PRO ALA GLY SEQRES 26 B 366 CYS ARG ASP ALA LEU LEU GLN LEU THR SER GLY MET VAL SEQRES 27 B 366 GLN THR HIS VAL THR THR PRO GLY SER ILE PRO THR ILE SEQRES 28 B 366 CYS ASP LEU ALA ARG THR PHE ALA ARG GLU MET GLY GLU SEQRES 29 B 366 ALA ASN HET SO4 A 3 5 HET SO4 B 4 5 HET THM A 1 17 HET THM B 2 17 HETNAM SO4 SULFATE ION HETNAM THM THYMIDINE HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 THM 2(C10 H14 N2 O5) FORMUL 7 HOH *45(H2 O1) HELIX 1 1 LYS A 62 LEU A 69 1 8 HELIX 2 2 MET A 85 ARG A 89 1 5 HELIX 3 3 THR A 96 ASP A 108 1 13 HELIX 4 4 ALA A 114 ALA A 140 1 27 HELIX 5 5 PRO A 165 LEU A 169 1 5 HELIX 6 6 CYS A 171 LEU A 178 1 8 HELIX 7 7 PRO A 184 ALA A 192 1 9 HELIX 8 8 GLU A 210 LYS A 219 1 10 HELIX 9 9 LEU A 229 GLN A 250 1 22 HELIX 10 10 TRP A 255 ASP A 258 1 4 HELIX 11 11 ILE A 284 ASP A 286 5 3 HELIX 12 12 LEU A 288 PHE A 292 5 5 HELIX 13 13 ASN A 306 SER A 321 1 16 HELIX 14 14 GLY A 335 GLY A 346 1 12 HELIX 15 15 SER A 357 MET A 372 1 16 HELIX 16 16 LYS B 62 LEU B 69 1 8 HELIX 17 17 MET B 85 ARG B 89 1 5 HELIX 18 18 THR B 96 ASP B 108 1 13 HELIX 19 19 ALA B 114 ALA B 140 1 27 HELIX 20 20 PRO B 165 LEU B 169 1 5 HELIX 21 21 CYS B 171 LEU B 178 1 8 HELIX 22 22 PRO B 184 ALA B 192 1 9 HELIX 23 23 GLU B 210 LYS B 219 1 10 HELIX 24 24 LEU B 229 GLN B 250 1 22 HELIX 25 25 TRP B 255 ASP B 258 1 4 HELIX 26 26 ILE B 284 ASP B 286 5 3 HELIX 27 27 LEU B 288 PHE B 292 5 5 HELIX 28 28 ASN B 306 SER B 321 1 16 HELIX 29 29 GLY B 335 GLY B 346 1 12 HELIX 30 30 SER B 357 MET B 372 1 16 SHEET 1 A 5 HIS A 323 ASP A 328 0 SHEET 2 A 5 ASN A 202 ALA A 207 1 N ILE A 203 O HIS A 323 SHEET 3 A 5 LEU A 49 ASP A 55 1 N TYR A 53 O ASN A 202 SHEET 4 A 5 LEU A 157 ASP A 162 1 N LEU A 157 O LEU A 50 SHEET 5 A 5 VAL A 79 VAL A 81 1 N VAL A 79 O ILE A 160 SHEET 1 B 5 HIS B 323 ASP B 328 0 SHEET 2 B 5 ASN B 202 ALA B 207 1 N ILE B 203 O HIS B 323 SHEET 3 B 5 LEU B 49 ASP B 55 1 N TYR B 53 O ASN B 202 SHEET 4 B 5 LEU B 157 ASP B 162 1 N LEU B 157 O LEU B 50 SHEET 5 B 5 VAL B 79 VAL B 81 1 N VAL B 79 O ILE B 160 CISPEP 1 PRO A 153 PRO A 154 0 -0.87 CISPEP 2 PRO B 153 PRO B 154 0 1.67 CRYST1 114.910 119.130 109.150 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009162 0.00000 MTRIX1 1 -0.925320 0.324890 0.195530 26.39946 1 MTRIX2 1 0.327760 0.425960 0.843290 -0.95196 1 MTRIX3 1 0.190690 0.844400 -0.500640 -8.70279 1