HEADER ANTIBIOTIC 04-DEC-01 1KJ5 TITLE SOLUTION STRUCTURE OF HUMAN BETA-DEFENSIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-DEFENSIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HBD-1, DEFENSIN, BETA 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEFENSIN, ANTIMICROBIAL PROTEIN, HUMAN BETA-DEFENSIN 1, BETA- KEYWDS 2 DEFENSIN, HBD1, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.J.SCHIBLI,H.N.HUNTER,V.ASEYEV,T.D.STARNER,J.M.WIENCEK,P.B.MCCRAY AUTHOR 2 JR.,B.F.TACK,H.J.VOGEL REVDAT 3 23-FEB-22 1KJ5 1 REMARK REVDAT 2 24-FEB-09 1KJ5 1 VERSN REVDAT 1 20-MAR-02 1KJ5 0 JRNL AUTH D.J.SCHIBLI,H.N.HUNTER,V.ASEYEV,T.D.STARNER,J.M.WIENCEK, JRNL AUTH 2 P.B.MCCRAY JR.,B.F.TACK,H.J.VOGEL JRNL TITL THE SOLUTION STRUCTURES OF THE HUMAN BETA-DEFENSINS LEAD TO JRNL TITL 2 A BETTER UNDERSTANDING OF THE POTENT BACTERICIDAL ACTIVITY JRNL TITL 3 OF HBD3 AGAINST STAPHYLOCOCCUS AUREUS. JRNL REF J.BIOL.CHEM. V. 277 8279 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11741980 JRNL DOI 10.1074/JBC.M108830200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.0, ARIA 1.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), A.T.BRUNGER, P.D.ADAMS, REMARK 3 G.M.CLORE, W.L.DELANO, P.GROS, R.W.GROSSE- REMARK 3 KUNSTLEVE, J.-S.JIANG, J.KUSZEWSKI, M.NILGES, REMARK 3 N.S.PANNU, R.J.READ, L.M.RICE, T.SIMONSON, REMARK 3 G.L.WARREN (CNS), J.LINGE, S.O'DONOGHUE, M.NILGES REMARK 3 (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KJ5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000015007. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.79 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM HBD1; 0.5 MM HBD1 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 2D COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.8, NMRVIEW 4.1.3 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 4 86.08 -66.57 REMARK 500 1 CYS A 5 -74.32 -106.86 REMARK 500 1 PRO A 18 -78.94 -77.06 REMARK 500 1 ILE A 19 -172.10 -56.63 REMARK 500 1 PHE A 20 41.41 -77.94 REMARK 500 1 CYS A 27 -95.39 -83.87 REMARK 500 1 TYR A 28 -156.61 -61.51 REMARK 500 2 CYS A 5 -70.00 -98.30 REMARK 500 2 PRO A 18 -75.39 -91.01 REMARK 500 2 ILE A 19 -176.47 -56.02 REMARK 500 2 PHE A 20 32.15 -74.88 REMARK 500 2 THR A 21 -152.82 -78.86 REMARK 500 2 LYS A 22 94.07 -165.17 REMARK 500 2 CYS A 27 -85.48 -89.64 REMARK 500 2 TYR A 28 -158.23 -61.37 REMARK 500 3 ASN A 4 84.36 -66.11 REMARK 500 3 CYS A 5 -69.21 -102.26 REMARK 500 3 PRO A 18 -70.04 -81.49 REMARK 500 3 ILE A 19 -173.24 -56.59 REMARK 500 3 PHE A 20 25.91 -74.51 REMARK 500 3 THR A 21 -163.04 -76.74 REMARK 500 3 LYS A 22 108.23 -163.60 REMARK 500 3 CYS A 27 -91.30 -83.44 REMARK 500 3 TYR A 28 -156.18 -61.49 REMARK 500 4 ASN A 4 85.63 -68.91 REMARK 500 4 CYS A 5 -79.05 -109.53 REMARK 500 4 PRO A 18 -79.98 -90.80 REMARK 500 4 ILE A 19 -168.30 -56.60 REMARK 500 4 PHE A 20 33.97 -75.69 REMARK 500 4 CYS A 27 -78.06 -95.27 REMARK 500 4 TYR A 28 -164.65 -60.94 REMARK 500 5 PRO A 18 -83.30 -76.43 REMARK 500 5 ILE A 19 -171.18 -56.53 REMARK 500 5 PHE A 20 15.48 -69.96 REMARK 500 5 THR A 21 -172.71 -63.15 REMARK 500 5 CYS A 27 -78.47 -94.37 REMARK 500 5 TYR A 28 -176.92 -60.12 REMARK 500 6 CYS A 5 -72.43 -102.54 REMARK 500 6 PRO A 18 -73.34 -89.75 REMARK 500 6 ILE A 19 -173.45 -56.47 REMARK 500 6 PHE A 20 40.03 -78.10 REMARK 500 6 CYS A 27 -92.71 -93.18 REMARK 500 6 TYR A 28 -160.49 -61.24 REMARK 500 7 PRO A 18 -80.70 -79.05 REMARK 500 7 ILE A 19 -170.34 -56.56 REMARK 500 7 PHE A 20 35.56 -76.00 REMARK 500 7 GLN A 24 -66.98 -107.75 REMARK 500 7 CYS A 27 -84.52 -100.56 REMARK 500 7 TYR A 28 -160.52 -61.12 REMARK 500 8 HIS A 2 96.08 -60.24 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KJ6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HUMAN BETA-DEFENSIN 3 DBREF 1KJ5 A 1 36 UNP P60022 BD01_HUMAN 33 68 SEQRES 1 A 36 ASP HIS TYR ASN CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 A 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE GLN GLY THR SEQRES 3 A 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS SHEET 1 A 3 GLN A 11 LEU A 13 0 SHEET 2 A 3 LYS A 33 CYS A 35 -1 O LYS A 33 N LEU A 13 SHEET 3 A 3 ILE A 23 THR A 26 -1 N GLY A 25 O CYS A 34 SSBOND 1 CYS A 5 CYS A 34 1555 1555 2.03 SSBOND 2 CYS A 12 CYS A 27 1555 1555 2.03 SSBOND 3 CYS A 17 CYS A 35 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1