data_1KK9 # _entry.id 1KK9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1KK9 RCSB RCSB015041 WWPDB D_1000015041 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id YCIO_ECOLI _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KK9 _pdbx_database_status.recvd_initial_deposition_date 2001-12-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jia, J.' 1 'Lunin, V.V.' 2 'Sauve, V.' 3 'Huang, L.-W.' 4 'Matte, A.' 5 'Cygler, M.' 6 'Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of the YciO protein from Escherichia coli' 'PROTEINS: STRUCT.,FUNCT.,GENET.' 49 139 141 2002 PSFGEY US 0887-3585 0867 ? 12211024 10.1002/prot.10178 1 'The structure of the Yrdc gene product from E.coli' 'Protein Sci.' 9 2557 2566 2000 PRCIEI US 0961-8368 0795 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jia, J.' 1 primary 'Lunin, V.V.' 2 primary 'Sauve, V.' 3 primary 'Huang, L.-W.' 4 primary 'Matte, A.' 5 primary 'Cygler, M.' 6 1 'Teplova, M.' 7 1 'Tereshko, R.' 8 1 'Sanishvili, A.' 9 1 'Joachimiak, A.' 10 1 'Bushueva, T.' 11 1 'Anderson, W.F.' 12 1 'Egli, M.' 13 # _cell.entry_id 1KK9 _cell.length_a 48.400 _cell.length_b 68.770 _cell.length_c 94.770 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KK9 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'probable translation factor yciO' 25190.631 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSH(MSE)GTAAEHHREGI(MSE)SQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNA(MSE)ERI CRIRQLPDGHNFTL(MSE)CRDLSELSTYSFVDNVAFRL(MSE)KNNTPGNYTFILKGTKEVPRRLLQEKRKTIG(MSE) RVPSNPIAQALLEALGEP(MSE)LSTSL(MSE)LPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPV VVREGVGDVKPFL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMGTAAEHHREGIMSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNF TLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSL MLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier YCIO_ECOLI # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MSE n 1 5 GLY n 1 6 THR n 1 7 ALA n 1 8 ALA n 1 9 GLU n 1 10 HIS n 1 11 HIS n 1 12 ARG n 1 13 GLU n 1 14 GLY n 1 15 ILE n 1 16 MSE n 1 17 SER n 1 18 GLN n 1 19 PHE n 1 20 PHE n 1 21 TYR n 1 22 ILE n 1 23 HIS n 1 24 PRO n 1 25 ASP n 1 26 ASN n 1 27 PRO n 1 28 GLN n 1 29 GLN n 1 30 ARG n 1 31 LEU n 1 32 ILE n 1 33 ASN n 1 34 GLN n 1 35 ALA n 1 36 VAL n 1 37 GLU n 1 38 ILE n 1 39 VAL n 1 40 ARG n 1 41 LYS n 1 42 GLY n 1 43 GLY n 1 44 VAL n 1 45 ILE n 1 46 VAL n 1 47 TYR n 1 48 PRO n 1 49 THR n 1 50 ASP n 1 51 SER n 1 52 GLY n 1 53 TYR n 1 54 ALA n 1 55 LEU n 1 56 GLY n 1 57 CYS n 1 58 LYS n 1 59 ILE n 1 60 GLU n 1 61 ASP n 1 62 LYS n 1 63 ASN n 1 64 ALA n 1 65 MSE n 1 66 GLU n 1 67 ARG n 1 68 ILE n 1 69 CYS n 1 70 ARG n 1 71 ILE n 1 72 ARG n 1 73 GLN n 1 74 LEU n 1 75 PRO n 1 76 ASP n 1 77 GLY n 1 78 HIS n 1 79 ASN n 1 80 PHE n 1 81 THR n 1 82 LEU n 1 83 MSE n 1 84 CYS n 1 85 ARG n 1 86 ASP n 1 87 LEU n 1 88 SER n 1 89 GLU n 1 90 LEU n 1 91 SER n 1 92 THR n 1 93 TYR n 1 94 SER n 1 95 PHE n 1 96 VAL n 1 97 ASP n 1 98 ASN n 1 99 VAL n 1 100 ALA n 1 101 PHE n 1 102 ARG n 1 103 LEU n 1 104 MSE n 1 105 LYS n 1 106 ASN n 1 107 ASN n 1 108 THR n 1 109 PRO n 1 110 GLY n 1 111 ASN n 1 112 TYR n 1 113 THR n 1 114 PHE n 1 115 ILE n 1 116 LEU n 1 117 LYS n 1 118 GLY n 1 119 THR n 1 120 LYS n 1 121 GLU n 1 122 VAL n 1 123 PRO n 1 124 ARG n 1 125 ARG n 1 126 LEU n 1 127 LEU n 1 128 GLN n 1 129 GLU n 1 130 LYS n 1 131 ARG n 1 132 LYS n 1 133 THR n 1 134 ILE n 1 135 GLY n 1 136 MSE n 1 137 ARG n 1 138 VAL n 1 139 PRO n 1 140 SER n 1 141 ASN n 1 142 PRO n 1 143 ILE n 1 144 ALA n 1 145 GLN n 1 146 ALA n 1 147 LEU n 1 148 LEU n 1 149 GLU n 1 150 ALA n 1 151 LEU n 1 152 GLY n 1 153 GLU n 1 154 PRO n 1 155 MSE n 1 156 LEU n 1 157 SER n 1 158 THR n 1 159 SER n 1 160 LEU n 1 161 MSE n 1 162 LEU n 1 163 PRO n 1 164 GLY n 1 165 SER n 1 166 GLU n 1 167 PHE n 1 168 THR n 1 169 GLU n 1 170 SER n 1 171 ASP n 1 172 PRO n 1 173 GLU n 1 174 GLU n 1 175 ILE n 1 176 LYS n 1 177 ASP n 1 178 ARG n 1 179 LEU n 1 180 GLU n 1 181 LYS n 1 182 GLN n 1 183 VAL n 1 184 ASP n 1 185 LEU n 1 186 ILE n 1 187 ILE n 1 188 HIS n 1 189 GLY n 1 190 GLY n 1 191 TYR n 1 192 LEU n 1 193 GLY n 1 194 GLN n 1 195 LYS n 1 196 PRO n 1 197 THR n 1 198 THR n 1 199 VAL n 1 200 ILE n 1 201 ASP n 1 202 LEU n 1 203 THR n 1 204 ASP n 1 205 ASP n 1 206 THR n 1 207 PRO n 1 208 VAL n 1 209 VAL n 1 210 VAL n 1 211 ARG n 1 212 GLU n 1 213 GLY n 1 214 VAL n 1 215 GLY n 1 216 ASP n 1 217 VAL n 1 218 LYS n 1 219 PRO n 1 220 PHE n 1 221 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ycio _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YCIO_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGTAAEHHREGIMSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM CRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLP GSEFTESDPEEIKDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P45847 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KK9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 221 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P45847 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 218 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -11 _struct_ref_seq.pdbx_auth_seq_align_end 206 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1KK9 GLY A 1 ? UNP P45847 ? ? 'CLONING ARTIFACT' -14 1 1 1KK9 SER A 2 ? UNP P45847 ? ? 'CLONING ARTIFACT' -13 2 1 1KK9 HIS A 3 ? UNP P45847 ? ? 'CLONING ARTIFACT' -12 3 1 1KK9 MSE A 4 ? UNP P45847 MET 1 'MODIFIED RESIDUE' -11 4 1 1KK9 MSE A 16 ? UNP P45847 MET 13 'MODIFIED RESIDUE' 1 5 1 1KK9 MSE A 65 ? UNP P45847 MET 62 'MODIFIED RESIDUE' 50 6 1 1KK9 MSE A 83 ? UNP P45847 MET 80 'MODIFIED RESIDUE' 68 7 1 1KK9 MSE A 104 ? UNP P45847 MET 101 'MODIFIED RESIDUE' 89 8 1 1KK9 MSE A 136 ? UNP P45847 MET 133 'MODIFIED RESIDUE' 121 9 1 1KK9 MSE A 155 ? UNP P45847 MET 152 'MODIFIED RESIDUE' 140 10 1 1KK9 MSE A 161 ? UNP P45847 MET 158 'MODIFIED RESIDUE' 146 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1KK9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.6 _exptl_crystal.density_Matthews 3.47 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'PEG 3350, MES, magnesium acetate, ethylene glycol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-07-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97921 1.0 2 0.97942 1.0 3 0.95369 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97921,0.97942,0.95369 # _reflns.entry_id 1KK9 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.1 _reflns.number_obs 18736 _reflns.number_all 19133 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.068 _reflns.pdbx_netI_over_sigmaI 10.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.422 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1869 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1KK9 _refine.ls_number_reflns_obs 18731 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 50.0 _refine.ls_d_res_high 2.1 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.233 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 911 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh and Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1628 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 1759 _refine_hist.d_res_high 2.1 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function o_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? o_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg 1.46 ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? o_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? o_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? o_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1KK9 _struct.title 'CRYSTAL STRUCTURE OF E. COLI YCIO' _struct.pdbx_descriptor 'Protein yciO' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KK9 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text ;alpha/beta open twisted sheet, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, Structural Genomics, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 28 ? LYS A 41 ? GLN A 13 LYS A 26 1 ? 14 HELX_P HELX_P2 2 ASP A 61 ? GLN A 73 ? ASP A 46 GLN A 58 1 ? 13 HELX_P HELX_P3 3 ASP A 86 ? SER A 94 ? ASP A 71 SER A 79 1 ? 9 HELX_P HELX_P4 4 ASP A 97 ? ASN A 106 ? ASP A 82 ASN A 91 1 ? 10 HELX_P HELX_P5 5 PRO A 123 ? LEU A 127 ? PRO A 108 LEU A 112 5 ? 5 HELX_P HELX_P6 6 ASN A 141 ? GLY A 152 ? ASN A 126 GLY A 137 1 ? 12 HELX_P HELX_P7 7 ASP A 171 ? GLU A 180 ? ASP A 156 GLU A 165 1 ? 10 HELX_P HELX_P8 8 VAL A 217 ? LEU A 221 ? VAL A 202 LEU A 206 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 16 C ? ? ? 1_555 A SER 17 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A ALA 64 C ? ? ? 1_555 A MSE 65 N ? ? A ALA 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A MSE 65 C ? ? ? 1_555 A GLU 66 N ? ? A MSE 50 A GLU 51 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A LEU 82 C ? ? ? 1_555 A MSE 83 N ? ? A LEU 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? A MSE 83 C ? ? ? 1_555 A CYS 84 N ? ? A MSE 68 A CYS 69 1_555 ? ? ? ? ? ? ? 1.334 ? covale6 covale ? ? A LEU 103 C ? ? ? 1_555 A MSE 104 N ? ? A LEU 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A MSE 104 C ? ? ? 1_555 A LYS 105 N ? ? A MSE 89 A LYS 90 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A GLY 135 C ? ? ? 1_555 A MSE 136 N ? ? A GLY 120 A MSE 121 1_555 ? ? ? ? ? ? ? 1.325 ? covale9 covale ? ? A MSE 136 C ? ? ? 1_555 A ARG 137 N ? ? A MSE 121 A ARG 122 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A PRO 154 C ? ? ? 1_555 A MSE 155 N ? ? A PRO 139 A MSE 140 1_555 ? ? ? ? ? ? ? 1.319 ? covale11 covale ? ? A MSE 155 C ? ? ? 1_555 A LEU 156 N ? ? A MSE 140 A LEU 141 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A LEU 160 C ? ? ? 1_555 A MSE 161 N ? ? A LEU 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.325 ? covale13 covale ? ? A MSE 161 C ? ? ? 1_555 A LEU 162 N ? ? A MSE 146 A LEU 147 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 108 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 93 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 109 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 94 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.03 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel A 8 9 ? parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 18 ? TYR A 21 ? GLN A 3 TYR A 6 A 2 LEU A 185 ? HIS A 188 ? LEU A 170 HIS A 173 A 3 ILE A 45 ? THR A 49 ? ILE A 30 THR A 34 A 4 GLY A 52 ? CYS A 57 ? GLY A 37 CYS A 42 A 5 MSE A 155 ? SER A 159 ? MSE A 140 SER A 144 A 6 THR A 81 ? MSE A 83 ? THR A 66 MSE A 68 A 7 THR A 133 ? ARG A 137 ? THR A 118 ARG A 122 A 8 TYR A 112 ? LYS A 117 ? TYR A 97 LYS A 102 A 9 THR A 198 ? ASP A 201 ? THR A 183 ASP A 186 A 10 VAL A 208 ? ARG A 211 ? VAL A 193 ARG A 196 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 20 ? N PHE A 5 O HIS A 188 ? O HIS A 173 A 2 3 O ILE A 187 ? O ILE A 172 N VAL A 46 ? N VAL A 31 A 3 4 N ILE A 45 ? N ILE A 30 O GLY A 56 ? O GLY A 41 A 4 5 N LEU A 55 ? N LEU A 40 O THR A 158 ? O THR A 143 A 5 6 O SER A 157 ? O SER A 142 N THR A 81 ? N THR A 66 A 6 7 N LEU A 82 ? N LEU A 67 O GLY A 135 ? O GLY A 120 A 7 8 O MSE A 136 ? O MSE A 121 N PHE A 114 ? N PHE A 99 A 8 9 N THR A 113 ? N THR A 98 O ILE A 200 ? O ILE A 185 A 9 10 N ASP A 201 ? N ASP A 186 O VAL A 208 ? O VAL A 193 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 225' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 72 ? ARG A 57 . ? 1_555 ? 2 AC1 7 HIS A 78 ? HIS A 63 . ? 1_555 ? 3 AC1 7 THR A 158 ? THR A 143 . ? 1_555 ? 4 AC1 7 SER A 159 ? SER A 144 . ? 1_555 ? 5 AC1 7 ARG A 211 ? ARG A 196 . ? 1_555 ? 6 AC1 7 HOH C . ? HOH A 313 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 316 . ? 1_555 ? # _database_PDB_matrix.entry_id 1KK9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KK9 _atom_sites.fract_transf_matrix[1][1] 0.020661 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014541 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010552 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -14 ? ? ? A . n A 1 2 SER 2 -13 ? ? ? A . n A 1 3 HIS 3 -12 ? ? ? A . n A 1 4 MSE 4 -11 ? ? ? A . n A 1 5 GLY 5 -10 ? ? ? A . n A 1 6 THR 6 -9 ? ? ? A . n A 1 7 ALA 7 -8 ? ? ? A . n A 1 8 ALA 8 -7 ? ? ? A . n A 1 9 GLU 9 -6 ? ? ? A . n A 1 10 HIS 10 -5 ? ? ? A . n A 1 11 HIS 11 -4 ? ? ? A . n A 1 12 ARG 12 -3 ? ? ? A . n A 1 13 GLU 13 -2 ? ? ? A . n A 1 14 GLY 14 -1 ? ? ? A . n A 1 15 ILE 15 0 ? ? ? A . n A 1 16 MSE 16 1 1 MSE MSE A . n A 1 17 SER 17 2 2 SER SER A . n A 1 18 GLN 18 3 3 GLN GLN A . n A 1 19 PHE 19 4 4 PHE PHE A . n A 1 20 PHE 20 5 5 PHE PHE A . n A 1 21 TYR 21 6 6 TYR TYR A . n A 1 22 ILE 22 7 7 ILE ILE A . n A 1 23 HIS 23 8 8 HIS HIS A . n A 1 24 PRO 24 9 9 PRO PRO A . n A 1 25 ASP 25 10 10 ASP ASP A . n A 1 26 ASN 26 11 11 ASN ASN A . n A 1 27 PRO 27 12 12 PRO PRO A . n A 1 28 GLN 28 13 13 GLN GLN A . n A 1 29 GLN 29 14 14 GLN GLN A . n A 1 30 ARG 30 15 15 ARG ARG A . n A 1 31 LEU 31 16 16 LEU LEU A . n A 1 32 ILE 32 17 17 ILE ILE A . n A 1 33 ASN 33 18 18 ASN ASN A . n A 1 34 GLN 34 19 19 GLN GLN A . n A 1 35 ALA 35 20 20 ALA ALA A . n A 1 36 VAL 36 21 21 VAL VAL A . n A 1 37 GLU 37 22 22 GLU GLU A . n A 1 38 ILE 38 23 23 ILE ILE A . n A 1 39 VAL 39 24 24 VAL VAL A . n A 1 40 ARG 40 25 25 ARG ARG A . n A 1 41 LYS 41 26 26 LYS LYS A . n A 1 42 GLY 42 27 27 GLY GLY A . n A 1 43 GLY 43 28 28 GLY GLY A . n A 1 44 VAL 44 29 29 VAL VAL A . n A 1 45 ILE 45 30 30 ILE ILE A . n A 1 46 VAL 46 31 31 VAL VAL A . n A 1 47 TYR 47 32 32 TYR TYR A . n A 1 48 PRO 48 33 33 PRO PRO A . n A 1 49 THR 49 34 34 THR THR A . n A 1 50 ASP 50 35 35 ASP ASP A . n A 1 51 SER 51 36 36 SER SER A . n A 1 52 GLY 52 37 37 GLY GLY A . n A 1 53 TYR 53 38 38 TYR TYR A . n A 1 54 ALA 54 39 39 ALA ALA A . n A 1 55 LEU 55 40 40 LEU LEU A . n A 1 56 GLY 56 41 41 GLY GLY A . n A 1 57 CYS 57 42 42 CYS CYS A . n A 1 58 LYS 58 43 43 LYS LYS A . n A 1 59 ILE 59 44 44 ILE ILE A . n A 1 60 GLU 60 45 45 GLU GLU A . n A 1 61 ASP 61 46 46 ASP ASP A . n A 1 62 LYS 62 47 47 LYS LYS A . n A 1 63 ASN 63 48 48 ASN ASN A . n A 1 64 ALA 64 49 49 ALA ALA A . n A 1 65 MSE 65 50 50 MSE MSE A . n A 1 66 GLU 66 51 51 GLU GLU A . n A 1 67 ARG 67 52 52 ARG ARG A . n A 1 68 ILE 68 53 53 ILE ILE A . n A 1 69 CYS 69 54 54 CYS CYS A . n A 1 70 ARG 70 55 55 ARG ARG A . n A 1 71 ILE 71 56 56 ILE ILE A . n A 1 72 ARG 72 57 57 ARG ARG A . n A 1 73 GLN 73 58 58 GLN GLN A . n A 1 74 LEU 74 59 59 LEU LEU A . n A 1 75 PRO 75 60 60 PRO PRO A . n A 1 76 ASP 76 61 61 ASP ASP A . n A 1 77 GLY 77 62 62 GLY GLY A . n A 1 78 HIS 78 63 63 HIS HIS A . n A 1 79 ASN 79 64 64 ASN ASN A . n A 1 80 PHE 80 65 65 PHE PHE A . n A 1 81 THR 81 66 66 THR THR A . n A 1 82 LEU 82 67 67 LEU LEU A . n A 1 83 MSE 83 68 68 MSE MSE A . n A 1 84 CYS 84 69 69 CYS CYS A . n A 1 85 ARG 85 70 70 ARG ARG A . n A 1 86 ASP 86 71 71 ASP ASP A . n A 1 87 LEU 87 72 72 LEU LEU A . n A 1 88 SER 88 73 73 SER SER A . n A 1 89 GLU 89 74 74 GLU GLU A . n A 1 90 LEU 90 75 75 LEU LEU A . n A 1 91 SER 91 76 76 SER SER A . n A 1 92 THR 92 77 77 THR THR A . n A 1 93 TYR 93 78 78 TYR TYR A . n A 1 94 SER 94 79 79 SER SER A . n A 1 95 PHE 95 80 80 PHE PHE A . n A 1 96 VAL 96 81 81 VAL VAL A . n A 1 97 ASP 97 82 82 ASP ASP A . n A 1 98 ASN 98 83 83 ASN ASN A . n A 1 99 VAL 99 84 84 VAL VAL A . n A 1 100 ALA 100 85 85 ALA ALA A . n A 1 101 PHE 101 86 86 PHE PHE A . n A 1 102 ARG 102 87 87 ARG ARG A . n A 1 103 LEU 103 88 88 LEU LEU A . n A 1 104 MSE 104 89 89 MSE MSE A . n A 1 105 LYS 105 90 90 LYS LYS A . n A 1 106 ASN 106 91 91 ASN ASN A . n A 1 107 ASN 107 92 92 ASN ASN A . n A 1 108 THR 108 93 93 THR THR A . n A 1 109 PRO 109 94 94 PRO PRO A . n A 1 110 GLY 110 95 95 GLY GLY A . n A 1 111 ASN 111 96 96 ASN ASN A . n A 1 112 TYR 112 97 97 TYR TYR A . n A 1 113 THR 113 98 98 THR THR A . n A 1 114 PHE 114 99 99 PHE PHE A . n A 1 115 ILE 115 100 100 ILE ILE A . n A 1 116 LEU 116 101 101 LEU LEU A . n A 1 117 LYS 117 102 102 LYS LYS A . n A 1 118 GLY 118 103 103 GLY GLY A . n A 1 119 THR 119 104 104 THR THR A . n A 1 120 LYS 120 105 105 LYS LYS A . n A 1 121 GLU 121 106 106 GLU GLU A . n A 1 122 VAL 122 107 107 VAL VAL A . n A 1 123 PRO 123 108 108 PRO PRO A . n A 1 124 ARG 124 109 109 ARG ARG A . n A 1 125 ARG 125 110 110 ARG ARG A . n A 1 126 LEU 126 111 111 LEU LEU A . n A 1 127 LEU 127 112 112 LEU LEU A . n A 1 128 GLN 128 113 113 GLN GLN A . n A 1 129 GLU 129 114 114 GLU GLU A . n A 1 130 LYS 130 115 115 LYS LYS A . n A 1 131 ARG 131 116 116 ARG ARG A . n A 1 132 LYS 132 117 117 LYS LYS A . n A 1 133 THR 133 118 118 THR THR A . n A 1 134 ILE 134 119 119 ILE ILE A . n A 1 135 GLY 135 120 120 GLY GLY A . n A 1 136 MSE 136 121 121 MSE MSE A . n A 1 137 ARG 137 122 122 ARG ARG A . n A 1 138 VAL 138 123 123 VAL VAL A . n A 1 139 PRO 139 124 124 PRO PRO A . n A 1 140 SER 140 125 125 SER SER A . n A 1 141 ASN 141 126 126 ASN ASN A . n A 1 142 PRO 142 127 127 PRO PRO A . n A 1 143 ILE 143 128 128 ILE ILE A . n A 1 144 ALA 144 129 129 ALA ALA A . n A 1 145 GLN 145 130 130 GLN GLN A . n A 1 146 ALA 146 131 131 ALA ALA A . n A 1 147 LEU 147 132 132 LEU LEU A . n A 1 148 LEU 148 133 133 LEU LEU A . n A 1 149 GLU 149 134 134 GLU GLU A . n A 1 150 ALA 150 135 135 ALA ALA A . n A 1 151 LEU 151 136 136 LEU LEU A . n A 1 152 GLY 152 137 137 GLY GLY A . n A 1 153 GLU 153 138 138 GLU GLU A . n A 1 154 PRO 154 139 139 PRO PRO A . n A 1 155 MSE 155 140 140 MSE MSE A . n A 1 156 LEU 156 141 141 LEU LEU A . n A 1 157 SER 157 142 142 SER SER A . n A 1 158 THR 158 143 143 THR THR A . n A 1 159 SER 159 144 144 SER SER A . n A 1 160 LEU 160 145 145 LEU LEU A . n A 1 161 MSE 161 146 146 MSE MSE A . n A 1 162 LEU 162 147 147 LEU LEU A . n A 1 163 PRO 163 148 148 PRO PRO A . n A 1 164 GLY 164 149 149 GLY GLY A . n A 1 165 SER 165 150 150 SER SER A . n A 1 166 GLU 166 151 151 GLU GLU A . n A 1 167 PHE 167 152 152 PHE PHE A . n A 1 168 THR 168 153 153 THR THR A . n A 1 169 GLU 169 154 154 GLU GLU A . n A 1 170 SER 170 155 155 SER SER A . n A 1 171 ASP 171 156 156 ASP ASP A . n A 1 172 PRO 172 157 157 PRO PRO A . n A 1 173 GLU 173 158 158 GLU GLU A . n A 1 174 GLU 174 159 159 GLU GLU A . n A 1 175 ILE 175 160 160 ILE ILE A . n A 1 176 LYS 176 161 161 LYS LYS A . n A 1 177 ASP 177 162 162 ASP ASP A . n A 1 178 ARG 178 163 163 ARG ARG A . n A 1 179 LEU 179 164 164 LEU LEU A . n A 1 180 GLU 180 165 165 GLU GLU A . n A 1 181 LYS 181 166 166 LYS LYS A . n A 1 182 GLN 182 167 167 GLN GLN A . n A 1 183 VAL 183 168 168 VAL VAL A . n A 1 184 ASP 184 169 169 ASP ASP A . n A 1 185 LEU 185 170 170 LEU LEU A . n A 1 186 ILE 186 171 171 ILE ILE A . n A 1 187 ILE 187 172 172 ILE ILE A . n A 1 188 HIS 188 173 173 HIS HIS A . n A 1 189 GLY 189 174 174 GLY GLY A . n A 1 190 GLY 190 175 175 GLY GLY A . n A 1 191 TYR 191 176 176 TYR TYR A . n A 1 192 LEU 192 177 177 LEU LEU A . n A 1 193 GLY 193 178 178 GLY GLY A . n A 1 194 GLN 194 179 179 GLN GLN A . n A 1 195 LYS 195 180 180 LYS LYS A . n A 1 196 PRO 196 181 181 PRO PRO A . n A 1 197 THR 197 182 182 THR THR A . n A 1 198 THR 198 183 183 THR THR A . n A 1 199 VAL 199 184 184 VAL VAL A . n A 1 200 ILE 200 185 185 ILE ILE A . n A 1 201 ASP 201 186 186 ASP ASP A . n A 1 202 LEU 202 187 187 LEU LEU A . n A 1 203 THR 203 188 188 THR THR A . n A 1 204 ASP 204 189 189 ASP ASP A . n A 1 205 ASP 205 190 190 ASP ASP A . n A 1 206 THR 206 191 191 THR THR A . n A 1 207 PRO 207 192 192 PRO PRO A . n A 1 208 VAL 208 193 193 VAL VAL A . n A 1 209 VAL 209 194 194 VAL VAL A . n A 1 210 VAL 210 195 195 VAL VAL A . n A 1 211 ARG 211 196 196 ARG ARG A . n A 1 212 GLU 212 197 197 GLU GLU A . n A 1 213 GLY 213 198 198 GLY GLY A . n A 1 214 VAL 214 199 199 VAL VAL A . n A 1 215 GLY 215 200 200 GLY GLY A . n A 1 216 ASP 216 201 201 ASP ASP A . n A 1 217 VAL 217 202 202 VAL VAL A . n A 1 218 LYS 218 203 203 LYS LYS A . n A 1 219 PRO 219 204 204 PRO PRO A . n A 1 220 PHE 220 205 205 PHE PHE A . n A 1 221 LEU 221 206 206 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Montreal-Kingston Bacterial Structural Genomics Initiative' _pdbx_SG_project.initial_of_center BSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 225 225 SO4 SO4 A . C 3 HOH 1 301 301 HOH TIP A . C 3 HOH 2 302 302 HOH TIP A . C 3 HOH 3 303 303 HOH TIP A . C 3 HOH 4 304 304 HOH TIP A . C 3 HOH 5 305 305 HOH TIP A . C 3 HOH 6 306 306 HOH TIP A . C 3 HOH 7 307 307 HOH TIP A . C 3 HOH 8 308 308 HOH TIP A . C 3 HOH 9 309 309 HOH TIP A . C 3 HOH 10 310 310 HOH TIP A . C 3 HOH 11 311 311 HOH TIP A . C 3 HOH 12 312 312 HOH TIP A . C 3 HOH 13 313 313 HOH TIP A . C 3 HOH 14 314 314 HOH TIP A . C 3 HOH 15 315 315 HOH TIP A . C 3 HOH 16 316 316 HOH TIP A . C 3 HOH 17 318 318 HOH TIP A . C 3 HOH 18 319 319 HOH TIP A . C 3 HOH 19 320 320 HOH TIP A . C 3 HOH 20 321 321 HOH TIP A . C 3 HOH 21 322 322 HOH TIP A . C 3 HOH 22 323 323 HOH TIP A . C 3 HOH 23 324 324 HOH TIP A . C 3 HOH 24 325 325 HOH TIP A . C 3 HOH 25 326 326 HOH TIP A . C 3 HOH 26 327 327 HOH TIP A . C 3 HOH 27 328 328 HOH TIP A . C 3 HOH 28 329 329 HOH TIP A . C 3 HOH 29 330 330 HOH TIP A . C 3 HOH 30 331 331 HOH TIP A . C 3 HOH 31 332 332 HOH TIP A . C 3 HOH 32 333 333 HOH TIP A . C 3 HOH 33 334 334 HOH TIP A . C 3 HOH 34 335 335 HOH TIP A . C 3 HOH 35 336 336 HOH TIP A . C 3 HOH 36 337 337 HOH TIP A . C 3 HOH 37 338 338 HOH TIP A . C 3 HOH 38 339 339 HOH TIP A . C 3 HOH 39 340 340 HOH TIP A . C 3 HOH 40 341 341 HOH TIP A . C 3 HOH 41 342 342 HOH TIP A . C 3 HOH 42 343 343 HOH TIP A . C 3 HOH 43 344 344 HOH TIP A . C 3 HOH 44 345 345 HOH TIP A . C 3 HOH 45 346 346 HOH TIP A . C 3 HOH 46 347 347 HOH TIP A . C 3 HOH 47 348 348 HOH TIP A . C 3 HOH 48 349 349 HOH TIP A . C 3 HOH 49 350 350 HOH TIP A . C 3 HOH 50 351 351 HOH TIP A . C 3 HOH 51 352 352 HOH TIP A . C 3 HOH 52 353 353 HOH TIP A . C 3 HOH 53 354 354 HOH TIP A . C 3 HOH 54 355 355 HOH TIP A . C 3 HOH 55 356 356 HOH TIP A . C 3 HOH 56 357 357 HOH TIP A . C 3 HOH 57 358 358 HOH TIP A . C 3 HOH 58 359 359 HOH TIP A . C 3 HOH 59 360 360 HOH TIP A . C 3 HOH 60 361 361 HOH TIP A . C 3 HOH 61 362 362 HOH TIP A . C 3 HOH 62 363 363 HOH TIP A . C 3 HOH 63 364 364 HOH TIP A . C 3 HOH 64 365 365 HOH TIP A . C 3 HOH 65 366 366 HOH TIP A . C 3 HOH 66 367 367 HOH TIP A . C 3 HOH 67 368 368 HOH TIP A . C 3 HOH 68 369 369 HOH TIP A . C 3 HOH 69 370 370 HOH TIP A . C 3 HOH 70 371 371 HOH TIP A . C 3 HOH 71 372 372 HOH TIP A . C 3 HOH 72 373 373 HOH TIP A . C 3 HOH 73 374 374 HOH TIP A . C 3 HOH 74 375 375 HOH TIP A . C 3 HOH 75 376 376 HOH TIP A . C 3 HOH 76 377 377 HOH TIP A . C 3 HOH 77 378 378 HOH TIP A . C 3 HOH 78 379 379 HOH TIP A . C 3 HOH 79 380 380 HOH TIP A . C 3 HOH 80 381 381 HOH TIP A . C 3 HOH 81 382 382 HOH TIP A . C 3 HOH 82 383 383 HOH TIP A . C 3 HOH 83 384 384 HOH TIP A . C 3 HOH 84 385 385 HOH TIP A . C 3 HOH 85 386 386 HOH TIP A . C 3 HOH 86 387 387 HOH TIP A . C 3 HOH 87 388 388 HOH TIP A . C 3 HOH 88 389 389 HOH TIP A . C 3 HOH 89 390 390 HOH TIP A . C 3 HOH 90 391 391 HOH TIP A . C 3 HOH 91 392 392 HOH TIP A . C 3 HOH 92 393 393 HOH TIP A . C 3 HOH 93 394 394 HOH TIP A . C 3 HOH 94 395 395 HOH TIP A . C 3 HOH 95 396 396 HOH TIP A . C 3 HOH 96 397 397 HOH TIP A . C 3 HOH 97 398 398 HOH TIP A . C 3 HOH 98 399 399 HOH TIP A . C 3 HOH 99 400 400 HOH TIP A . C 3 HOH 100 401 401 HOH TIP A . C 3 HOH 101 402 402 HOH TIP A . C 3 HOH 102 403 403 HOH TIP A . C 3 HOH 103 404 404 HOH TIP A . C 3 HOH 104 405 405 HOH TIP A . C 3 HOH 105 406 406 HOH TIP A . C 3 HOH 106 407 407 HOH TIP A . C 3 HOH 107 408 408 HOH TIP A . C 3 HOH 108 409 409 HOH TIP A . C 3 HOH 109 410 410 HOH TIP A . C 3 HOH 110 411 411 HOH TIP A . C 3 HOH 111 412 412 HOH TIP A . C 3 HOH 112 413 413 HOH TIP A . C 3 HOH 113 414 414 HOH TIP A . C 3 HOH 114 415 415 HOH TIP A . C 3 HOH 115 416 416 HOH TIP A . C 3 HOH 116 417 417 HOH TIP A . C 3 HOH 117 418 418 HOH TIP A . C 3 HOH 118 419 419 HOH TIP A . C 3 HOH 119 420 420 HOH TIP A . C 3 HOH 120 421 421 HOH TIP A . C 3 HOH 121 422 422 HOH TIP A . C 3 HOH 122 423 423 HOH TIP A . C 3 HOH 123 424 424 HOH TIP A . C 3 HOH 124 425 425 HOH TIP A . C 3 HOH 125 426 426 HOH TIP A . C 3 HOH 126 427 427 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 16 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 65 A MSE 50 ? MET SELENOMETHIONINE 3 A MSE 83 A MSE 68 ? MET SELENOMETHIONINE 4 A MSE 104 A MSE 89 ? MET SELENOMETHIONINE 5 A MSE 136 A MSE 121 ? MET SELENOMETHIONINE 6 A MSE 155 A MSE 140 ? MET SELENOMETHIONINE 7 A MSE 161 A MSE 146 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-12-11 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Adxv 'data processing' . ? 1 SCALEPACK 'data scaling' . ? 2 SOLVE phasing . ? 3 CNS refinement 1.0 ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 96 ? ? 59.44 -9.89 2 1 LYS A 115 ? ? -54.53 -80.45 3 1 PRO A 148 ? ? -31.49 137.95 4 1 SER A 155 ? ? -140.13 -1.96 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -14 ? A GLY 1 2 1 Y 1 A SER -13 ? A SER 2 3 1 Y 1 A HIS -12 ? A HIS 3 4 1 Y 1 A MSE -11 ? A MSE 4 5 1 Y 1 A GLY -10 ? A GLY 5 6 1 Y 1 A THR -9 ? A THR 6 7 1 Y 1 A ALA -8 ? A ALA 7 8 1 Y 1 A ALA -7 ? A ALA 8 9 1 Y 1 A GLU -6 ? A GLU 9 10 1 Y 1 A HIS -5 ? A HIS 10 11 1 Y 1 A HIS -4 ? A HIS 11 12 1 Y 1 A ARG -3 ? A ARG 12 13 1 Y 1 A GLU -2 ? A GLU 13 14 1 Y 1 A GLY -1 ? A GLY 14 15 1 Y 1 A ILE 0 ? A ILE 15 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #