data_1KKA # _entry.id 1KKA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KKA pdb_00001kka 10.2210/pdb1kka/pdb RCSB RCSB015042 ? ? WWPDB D_1000015042 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-07-17 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KKA _pdbx_database_status.recvd_initial_deposition_date 2001-12-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1J4Y _pdbx_database_related.details '1J4Y IS THE MINIMIZED AVERAGE STRUCTURE' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cabello-Villegas, J.' 1 'Winkler, M.E.' 2 'Nikonowicz, E.P.' 3 # _citation.id primary _citation.title 'Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 319 _citation.page_first 1015 _citation.page_last 1034 _citation.year 2002 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12079344 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)00382-0' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cabello-Villegas, J.' 1 ? primary 'Winkler, M.E.' 2 ? primary 'Nikonowicz, E.P.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'anticodon stem-loop of tRNA(PHE)' _entity.formula_weight 5466.324 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGGAUUGAAAAUCCCC _entity_poly.pdbx_seq_one_letter_code_can GGGGAUUGAAAAUCCCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 G n 1 5 A n 1 6 U n 1 7 U n 1 8 G n 1 9 A n 1 10 A n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 C n 1 17 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'T7 RNA polymerase in vitro transcription' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 A 12 12 12 A A A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n # _exptl.entry_id 1KKA _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1KKA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1KKA _struct.title 'Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe)' _struct.pdbx_model_details 'tRNA(Phe)' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KKA _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA stem-loop, trinucleotide loop, hairpin, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1KKA _struct_ref.pdbx_db_accession 1KKA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KKA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1KKA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 1 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 1 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 1 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 2 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 2 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 2 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 3 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 3 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 3 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 4 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 4 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 4 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 13 N3 ? ? A A 5 A U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 13 O4 ? ? A A 5 A U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 12 N1 ? ? A U 6 A A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 12 N6 ? ? A U 6 A A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 9 N6 ? ? A U 7 A A 9 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog18 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 11 N1 ? ? A U 7 A A 11 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 A U 7 ? ? H62 A A 10 ? ? 1.27 2 1 O2 A U 7 ? ? N6 A A 10 ? ? 1.70 3 2 O2 A U 7 ? ? H62 A A 10 ? ? 1.30 4 2 O2 A U 7 ? ? N6 A A 10 ? ? 1.76 5 3 O2 A U 7 ? ? H62 A A 10 ? ? 1.18 6 3 O2 A U 7 ? ? N6 A A 10 ? ? 1.72 7 4 O2 A U 7 ? ? H62 A A 10 ? ? 1.29 8 4 O2 A U 7 ? ? N6 A A 10 ? ? 1.73 9 5 O2 A U 7 ? ? H62 A A 10 ? ? 1.31 10 5 "HO2'" A A 11 ? ? "O4'" A A 12 ? ? 1.44 11 5 O2 A U 7 ? ? N6 A A 10 ? ? 1.47 12 5 O2 A U 7 ? ? H61 A A 10 ? ? 1.59 13 6 O2 A U 7 ? ? H62 A A 10 ? ? 1.27 14 6 "HO2'" A A 11 ? ? "O4'" A A 12 ? ? 1.46 15 6 O2 A U 7 ? ? N6 A A 10 ? ? 1.51 16 7 O2 A U 7 ? ? H62 A A 10 ? ? 1.12 17 7 "O2'" A A 11 ? ? "O4'" A A 12 ? ? 1.71 18 7 O2 A U 7 ? ? N6 A A 10 ? ? 1.73 19 8 O2 A U 7 ? ? H62 A A 10 ? ? 1.38 20 8 "HO2'" A A 11 ? ? "O4'" A A 12 ? ? 1.48 21 8 O2 A U 7 ? ? N6 A A 10 ? ? 1.77 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.64 113.10 4.54 0.50 N 2 1 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.54 106.40 -2.86 0.40 N 3 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.55 113.10 4.45 0.50 N 4 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.62 106.40 -2.78 0.40 N 5 1 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.60 113.10 4.50 0.50 N 6 1 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.54 106.40 -2.86 0.40 N 7 1 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.62 113.10 4.52 0.50 N 8 1 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.53 106.40 -2.87 0.40 N 9 1 N7 A A 5 ? ? C8 A A 5 ? ? N9 A A 5 ? ? 117.51 113.80 3.71 0.50 N 10 1 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.68 113.10 4.58 0.50 N 11 1 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.45 106.40 -2.95 0.40 N 12 1 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.17 113.80 3.37 0.50 N 13 1 C8 A A 9 ? ? N9 A A 9 ? ? C4 A A 9 ? ? 103.39 105.80 -2.41 0.40 N 14 1 N7 A A 10 ? ? C8 A A 10 ? ? N9 A A 10 ? ? 117.66 113.80 3.86 0.50 N 15 1 C8 A A 10 ? ? N9 A A 10 ? ? C4 A A 10 ? ? 103.29 105.80 -2.51 0.40 N 16 1 N7 A A 11 ? ? C8 A A 11 ? ? N9 A A 11 ? ? 117.56 113.80 3.76 0.50 N 17 1 N7 A A 12 ? ? C8 A A 12 ? ? N9 A A 12 ? ? 117.58 113.80 3.78 0.50 N 18 1 C8 A A 12 ? ? N9 A A 12 ? ? C4 A A 12 ? ? 103.33 105.80 -2.47 0.40 N 19 2 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.63 113.10 4.53 0.50 N 20 2 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.52 106.40 -2.88 0.40 N 21 2 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.54 113.10 4.44 0.50 N 22 2 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.49 106.40 -2.91 0.40 N 23 2 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.61 113.10 4.51 0.50 N 24 2 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.47 106.40 -2.93 0.40 N 25 2 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.49 113.10 4.39 0.50 N 26 2 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.62 106.40 -2.78 0.40 N 27 2 N7 A A 5 ? ? C8 A A 5 ? ? N9 A A 5 ? ? 117.48 113.80 3.68 0.50 N 28 2 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.67 113.10 4.57 0.50 N 29 2 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.42 106.40 -2.98 0.40 N 30 2 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.12 113.80 3.32 0.50 N 31 2 N7 A A 10 ? ? C8 A A 10 ? ? N9 A A 10 ? ? 117.65 113.80 3.85 0.50 N 32 2 C8 A A 10 ? ? N9 A A 10 ? ? C4 A A 10 ? ? 103.26 105.80 -2.54 0.40 N 33 2 N7 A A 11 ? ? C8 A A 11 ? ? N9 A A 11 ? ? 117.54 113.80 3.74 0.50 N 34 2 N7 A A 12 ? ? C8 A A 12 ? ? N9 A A 12 ? ? 117.57 113.80 3.77 0.50 N 35 2 C8 A A 12 ? ? N9 A A 12 ? ? C4 A A 12 ? ? 103.33 105.80 -2.47 0.40 N 36 3 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.72 113.10 4.62 0.50 N 37 3 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.46 106.40 -2.94 0.40 N 38 3 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.57 113.10 4.47 0.50 N 39 3 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.63 106.40 -2.77 0.40 N 40 3 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.58 113.10 4.48 0.50 N 41 3 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.56 106.40 -2.84 0.40 N 42 3 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.52 113.10 4.42 0.50 N 43 3 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.63 106.40 -2.77 0.40 N 44 3 N7 A A 5 ? ? C8 A A 5 ? ? N9 A A 5 ? ? 117.42 113.80 3.62 0.50 N 45 3 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.69 113.10 4.59 0.50 N 46 3 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.46 106.40 -2.94 0.40 N 47 3 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.17 113.80 3.37 0.50 N 48 3 N7 A A 10 ? ? C8 A A 10 ? ? N9 A A 10 ? ? 117.59 113.80 3.79 0.50 N 49 3 C8 A A 10 ? ? N9 A A 10 ? ? C4 A A 10 ? ? 103.34 105.80 -2.46 0.40 N 50 3 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 106.49 101.50 4.99 0.80 N 51 3 N7 A A 11 ? ? C8 A A 11 ? ? N9 A A 11 ? ? 117.68 113.80 3.88 0.50 N 52 3 N7 A A 12 ? ? C8 A A 12 ? ? N9 A A 12 ? ? 117.41 113.80 3.61 0.50 N 53 4 "C3'" A G 1 ? ? "C2'" A G 1 ? ? "C1'" A G 1 ? ? 106.54 101.50 5.04 0.80 N 54 4 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.74 113.10 4.64 0.50 N 55 4 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.45 106.40 -2.95 0.40 N 56 4 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.55 113.10 4.45 0.50 N 57 4 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.63 106.40 -2.77 0.40 N 58 4 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.55 113.10 4.45 0.50 N 59 4 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.63 106.40 -2.77 0.40 N 60 4 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.58 113.10 4.48 0.50 N 61 4 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.60 106.40 -2.80 0.40 N 62 4 N7 A A 5 ? ? C8 A A 5 ? ? N9 A A 5 ? ? 117.54 113.80 3.74 0.50 N 63 4 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.78 113.10 4.68 0.50 N 64 4 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.36 106.40 -3.04 0.40 N 65 4 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.23 113.80 3.43 0.50 N 66 4 C8 A A 9 ? ? N9 A A 9 ? ? C4 A A 9 ? ? 103.37 105.80 -2.43 0.40 N 67 4 N7 A A 10 ? ? C8 A A 10 ? ? N9 A A 10 ? ? 117.62 113.80 3.82 0.50 N 68 4 C8 A A 10 ? ? N9 A A 10 ? ? C4 A A 10 ? ? 103.38 105.80 -2.42 0.40 N 69 4 N7 A A 11 ? ? C8 A A 11 ? ? N9 A A 11 ? ? 117.74 113.80 3.94 0.50 N 70 4 C8 A A 11 ? ? N9 A A 11 ? ? C4 A A 11 ? ? 103.37 105.80 -2.43 0.40 N 71 4 N7 A A 12 ? ? C8 A A 12 ? ? N9 A A 12 ? ? 117.62 113.80 3.82 0.50 N 72 4 C8 A A 12 ? ? N9 A A 12 ? ? C4 A A 12 ? ? 103.27 105.80 -2.53 0.40 N 73 5 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.63 113.10 4.53 0.50 N 74 5 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.53 106.40 -2.87 0.40 N 75 5 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.67 113.10 4.57 0.50 N 76 5 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.58 106.40 -2.82 0.40 N 77 5 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.54 113.10 4.44 0.50 N 78 5 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.57 106.40 -2.83 0.40 N 79 5 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.51 113.10 4.41 0.50 N 80 5 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.69 106.40 -2.71 0.40 N 81 5 N7 A A 5 ? ? C8 A A 5 ? ? N9 A A 5 ? ? 117.45 113.80 3.65 0.50 N 82 5 "C3'" A U 7 ? ? "C2'" A U 7 ? ? "C1'" A U 7 ? ? 107.14 101.50 5.64 0.80 N 83 5 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.61 113.10 4.51 0.50 N 84 5 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.44 106.40 -2.96 0.40 N 85 5 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.16 113.80 3.36 0.50 N 86 5 N7 A A 10 ? ? C8 A A 10 ? ? N9 A A 10 ? ? 117.73 113.80 3.93 0.50 N 87 5 C8 A A 10 ? ? N9 A A 10 ? ? C4 A A 10 ? ? 103.26 105.80 -2.54 0.40 N 88 5 "C1'" A A 11 ? ? "O4'" A A 11 ? ? "C4'" A A 11 ? ? 114.92 109.90 5.02 0.80 N 89 5 N7 A A 11 ? ? C8 A A 11 ? ? N9 A A 11 ? ? 117.69 113.80 3.89 0.50 N 90 5 N7 A A 12 ? ? C8 A A 12 ? ? N9 A A 12 ? ? 117.58 113.80 3.78 0.50 N 91 5 C8 A A 12 ? ? N9 A A 12 ? ? C4 A A 12 ? ? 103.33 105.80 -2.47 0.40 N 92 6 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.68 113.10 4.58 0.50 N 93 6 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.47 106.40 -2.93 0.40 N 94 6 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.54 113.10 4.44 0.50 N 95 6 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.61 106.40 -2.79 0.40 N 96 6 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.57 113.10 4.47 0.50 N 97 6 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.71 106.40 -2.69 0.40 N 98 6 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.48 113.10 4.38 0.50 N 99 6 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.71 106.40 -2.69 0.40 N 100 6 N7 A A 5 ? ? C8 A A 5 ? ? N9 A A 5 ? ? 117.43 113.80 3.63 0.50 N 101 6 "C3'" A U 7 ? ? "C2'" A U 7 ? ? "C1'" A U 7 ? ? 106.92 101.50 5.42 0.80 N 102 6 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.71 113.10 4.61 0.50 N 103 6 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.41 106.40 -2.99 0.40 N 104 6 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.24 113.80 3.44 0.50 N 105 6 C8 A A 9 ? ? N9 A A 9 ? ? C4 A A 9 ? ? 103.33 105.80 -2.47 0.40 N 106 6 N7 A A 10 ? ? C8 A A 10 ? ? N9 A A 10 ? ? 117.65 113.80 3.85 0.50 N 107 6 C8 A A 10 ? ? N9 A A 10 ? ? C4 A A 10 ? ? 103.32 105.80 -2.48 0.40 N 108 6 "C1'" A A 11 ? ? "O4'" A A 11 ? ? "C4'" A A 11 ? ? 114.94 109.90 5.04 0.80 N 109 6 "C3'" A A 11 ? ? "C2'" A A 11 ? ? "C1'" A A 11 ? ? 106.84 101.50 5.34 0.80 N 110 6 N7 A A 11 ? ? C8 A A 11 ? ? N9 A A 11 ? ? 117.61 113.80 3.81 0.50 N 111 6 N7 A A 12 ? ? C8 A A 12 ? ? N9 A A 12 ? ? 117.60 113.80 3.80 0.50 N 112 6 C8 A A 12 ? ? N9 A A 12 ? ? C4 A A 12 ? ? 103.29 105.80 -2.51 0.40 N 113 7 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.63 113.10 4.53 0.50 N 114 7 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.54 106.40 -2.86 0.40 N 115 7 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.61 113.10 4.51 0.50 N 116 7 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.54 106.40 -2.86 0.40 N 117 7 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.49 113.10 4.39 0.50 N 118 7 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.67 106.40 -2.73 0.40 N 119 7 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.45 113.10 4.35 0.50 N 120 7 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.66 106.40 -2.74 0.40 N 121 7 N7 A A 5 ? ? C8 A A 5 ? ? N9 A A 5 ? ? 117.49 113.80 3.69 0.50 N 122 7 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.67 113.10 4.57 0.50 N 123 7 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.42 106.40 -2.98 0.40 N 124 7 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.20 113.80 3.40 0.50 N 125 7 N7 A A 10 ? ? C8 A A 10 ? ? N9 A A 10 ? ? 117.77 113.80 3.97 0.50 N 126 7 C8 A A 10 ? ? N9 A A 10 ? ? C4 A A 10 ? ? 103.18 105.80 -2.62 0.40 N 127 7 N7 A A 11 ? ? C8 A A 11 ? ? N9 A A 11 ? ? 117.55 113.80 3.75 0.50 N 128 7 N7 A A 12 ? ? C8 A A 12 ? ? N9 A A 12 ? ? 117.59 113.80 3.79 0.50 N 129 7 C8 A A 12 ? ? N9 A A 12 ? ? C4 A A 12 ? ? 103.31 105.80 -2.49 0.40 N 130 8 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.70 113.10 4.60 0.50 N 131 8 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.49 106.40 -2.91 0.40 N 132 8 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.44 113.10 4.34 0.50 N 133 8 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.61 106.40 -2.79 0.40 N 134 8 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.53 113.10 4.43 0.50 N 135 8 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 103.61 106.40 -2.79 0.40 N 136 8 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 117.47 113.10 4.37 0.50 N 137 8 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 103.73 106.40 -2.67 0.40 N 138 8 N7 A A 5 ? ? C8 A A 5 ? ? N9 A A 5 ? ? 117.45 113.80 3.65 0.50 N 139 8 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 117.74 113.10 4.64 0.50 N 140 8 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.35 106.40 -3.05 0.40 N 141 8 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.15 113.80 3.35 0.50 N 142 8 C8 A A 9 ? ? N9 A A 9 ? ? C4 A A 9 ? ? 103.39 105.80 -2.41 0.40 N 143 8 N7 A A 10 ? ? C8 A A 10 ? ? N9 A A 10 ? ? 117.65 113.80 3.85 0.50 N 144 8 C8 A A 10 ? ? N9 A A 10 ? ? C4 A A 10 ? ? 103.36 105.80 -2.44 0.40 N 145 8 N7 A A 11 ? ? C8 A A 11 ? ? N9 A A 11 ? ? 117.71 113.80 3.91 0.50 N 146 8 N7 A A 12 ? ? C8 A A 12 ? ? N9 A A 12 ? ? 117.54 113.80 3.74 0.50 N 147 8 C8 A A 12 ? ? N9 A A 12 ? ? C4 A A 12 ? ? 103.31 105.80 -2.49 0.40 N 148 8 "C1'" A C 14 ? ? "O4'" A C 14 ? ? "C4'" A C 14 ? ? 115.60 109.90 5.70 0.80 N # _pdbx_nmr_ensemble.entry_id 1KKA _pdbx_nmr_ensemble.conformers_calculated_total_number 60 _pdbx_nmr_ensemble.conformers_submitted_total_number 8 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations,structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1KKA _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2mM ACSL-Phe, 15N, 13C' _pdbx_nmr_sample_details.solvent_system ;10 mM Potassium Phosphate, 10mM NaCl, 0.02mM EDTA. 90% H2O-10% D2O or 100% D2O. ; # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 1 6.8 '10 mM KPi, 10mM NaCl' atm K 2 288 1 6.8 '10 mM KPi, 10mM NaCl' atm K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 1 1 3D_13C-separated_NOESY 3 1 1 DQF-COSY 4 1 1 HNN-COSY # _pdbx_nmr_details.entry_id 1KKA _pdbx_nmr_details.text 'The structure was determined using 1H, 13C, 15N and 31P heteronuclear NMR spectroscopy.' # _pdbx_nmr_refine.entry_id 1KKA _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;294 NOE distance constraints, 36 base pair constraints, 70 torsion angle constraints. Global fold without torsion angle constraints. Refinement with torsion angle constraints. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 3.861 refinement 'Brunger, A.' 1 Felix 98 'data analysis' MSI-Biosym 2 X-PLOR 3.1 'structure solution' Brunger 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1KKA 'double helix' 1KKA 'a-form double helix' 1KKA 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 17 1_555 -0.471 0.048 -0.627 1.037 -9.689 1.546 1 A_G1:C17_A A 1 ? A 17 ? 19 1 1 A G 2 1_555 A C 16 1_555 0.024 0.184 0.346 4.501 15.714 0.989 2 A_G2:C16_A A 2 ? A 16 ? 19 1 1 A G 3 1_555 A C 15 1_555 0.034 0.250 -0.280 -19.686 -9.631 -1.794 3 A_G3:C15_A A 3 ? A 15 ? 19 1 1 A G 4 1_555 A C 14 1_555 0.305 -0.078 -1.200 -5.739 -3.998 -2.035 4 A_G4:C14_A A 4 ? A 14 ? 19 1 1 A A 5 1_555 A U 13 1_555 0.329 -0.146 -1.383 -18.396 -17.265 5.215 5 A_A5:U13_A A 5 ? A 13 ? 20 1 1 A U 6 1_555 A A 12 1_555 0.352 0.125 0.765 -25.799 -6.397 -0.144 6 A_U6:A12_A A 6 ? A 12 ? 20 1 1 A U 7 1_555 A A 9 1_555 0.741 2.792 -0.351 -33.059 6.477 -60.770 7 A_U7:A9_A A 7 ? A 9 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 17 1_555 A G 2 1_555 A C 16 1_555 -0.196 -1.753 3.521 -7.415 13.556 16.674 -8.914 -1.941 1.619 37.810 20.680 22.695 1 AA_G1G2:C16C17_AA A 1 ? A 17 ? A 2 ? A 16 ? 1 A G 2 1_555 A C 16 1_555 A G 3 1_555 A C 15 1_555 -0.150 -1.887 5.081 4.695 14.902 31.932 -6.233 1.234 3.798 25.284 -7.967 35.460 2 AA_G2G3:C15C16_AA A 2 ? A 16 ? A 3 ? A 15 ? 1 A G 3 1_555 A C 15 1_555 A G 4 1_555 A C 14 1_555 0.842 -1.726 3.851 5.743 0.591 23.031 -4.432 0.233 3.897 1.450 -14.102 23.734 3 AA_G3G4:C14C15_AA A 3 ? A 15 ? A 4 ? A 14 ? 1 A G 4 1_555 A C 14 1_555 A A 5 1_555 A U 13 1_555 1.780 -1.426 4.373 2.223 10.581 27.131 -5.786 -2.914 3.699 21.503 -4.519 29.168 4 AA_G4A5:U13C14_AA A 4 ? A 14 ? A 5 ? A 13 ? 1 A A 5 1_555 A U 13 1_555 A U 6 1_555 A A 12 1_555 0.344 -1.960 4.036 -10.419 -7.817 28.097 -1.710 -3.265 4.048 -15.116 20.148 30.914 5 AA_A5U6:A12U13_AA A 5 ? A 13 ? A 6 ? A 12 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.field_strength 500 # _atom_sites.entry_id 1KKA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_