HEADER HYDROLASE 13-DEC-01 1KLX TITLE HELICOBACTER PYLORI CYSTEINE RICH PROTEIN B (HCPB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE RICH PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: HP0336; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTFT74 KEYWDS STRUCTURAL GENOMICS, HELIX-TURN-HELIX, RIGHT HANDED SUPER HELIX, KEYWDS 2 MODULAR STRUCTURE', HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.LUETHY,M.G.GRUETTER,P.R.E.MITTL REVDAT 5 06-NOV-24 1KLX 1 REMARK REVDAT 4 24-JUL-19 1KLX 1 REMARK REVDAT 3 24-FEB-09 1KLX 1 VERSN REVDAT 2 01-APR-03 1KLX 1 JRNL REVDAT 1 11-SEP-02 1KLX 0 JRNL AUTH L.LUTHY,M.G.GRUTTER,P.R.MITTL JRNL TITL THE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI CYSTEINE-RICH JRNL TITL 2 PROTEIN B REVEALS A NOVEL FOLD FOR A PENICILLIN-BINDING JRNL TITL 3 PROTEIN. JRNL REF J.BIOL.CHEM. V. 277 10187 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11777911 JRNL DOI 10.1074/JBC.M108993200 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 12049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1239 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 730 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1029 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : 0.78000 REMARK 3 B33 (A**2) : -1.17000 REMARK 3 B12 (A**2) : 0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.738 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1047 ; 0.040 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1396 ; 2.438 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 132 ; 3.741 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 206 ;12.891 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 145 ; 0.225 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 770 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 533 ; 0.234 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 109 ; 0.225 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.237 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.220 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 650 ; 2.043 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1020 ; 3.344 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 397 ; 5.829 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 376 ; 9.609 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000015091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : 3 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : BM14; ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791, 0.9794, 0.8856; 0.9330 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL; NULL REMARK 200 DETECTOR MANUFACTURER : NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12049 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CITRATE, PH 3, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.29400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.64700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.97050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.32350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 171.61750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 137.29400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 68.64700 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.32350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 102.97050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 171.61750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ASN A 136 REMARK 465 ASN A 137 REMARK 465 TYR A 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 318 O HOH A 319 2.03 REMARK 500 OE1 GLU A 113 O HOH A 232 2.06 REMARK 500 O HOH A 144 O HOH A 148 2.17 REMARK 500 O HOH A 160 O HOH A 221 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 200 O HOH A 277 10665 2.12 REMARK 500 O HOH A 200 O HOH A 327 10665 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 47 CD1 TYR A 47 CE1 0.113 REMARK 500 TYR A 67 CE2 TYR A 67 CD2 0.121 REMARK 500 VAL A 73 CB VAL A 73 CG1 -0.140 REMARK 500 VAL A 73 CB VAL A 73 CG2 0.166 REMARK 500 TYR A 83 CE2 TYR A 83 CD2 0.111 REMARK 500 ALA A 87 CA ALA A 87 CB 0.141 REMARK 500 TYR A 101 CG TYR A 101 CD2 0.092 REMARK 500 GLN A 115 CD GLN A 115 NE2 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 6 CA - CB - CG2 ANGL. DEV. = 10.3 DEGREES REMARK 500 TYR A 17 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 76 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 1KLX A 1 138 UNP O25103 HCPB_HELPY 1 138 SEQRES 1 A 138 MET VAL GLY GLY GLY THR VAL LYS LYS ASP LEU LYS LYS SEQRES 2 A 138 ALA ILE GLN TYR TYR VAL LYS ALA CYS GLU LEU ASN GLU SEQRES 3 A 138 MET PHE GLY CYS LEU SER LEU VAL SER ASN SER GLN ILE SEQRES 4 A 138 ASN LYS GLN LYS LEU PHE GLN TYR LEU SER LYS ALA CYS SEQRES 5 A 138 GLU LEU ASN SER GLY ASN GLY CYS ARG PHE LEU GLY ASP SEQRES 6 A 138 PHE TYR GLU ASN GLY LYS TYR VAL LYS LYS ASP LEU ARG SEQRES 7 A 138 LYS ALA ALA GLN TYR TYR SER LYS ALA CYS GLY LEU ASN SEQRES 8 A 138 ASP GLN ASP GLY CYS LEU ILE LEU GLY TYR LYS GLN TYR SEQRES 9 A 138 ALA GLY LYS GLY VAL VAL LYS ASN GLU LYS GLN ALA VAL SEQRES 10 A 138 LYS THR PHE GLU LYS ALA CYS ARG LEU GLY SER GLU ASP SEQRES 11 A 138 ALA CYS GLY ILE LEU ASN ASN TYR FORMUL 2 HOH *189(H2 O) HELIX 1 1 THR A 6 LEU A 24 1 19 HELIX 2 2 PHE A 28 SER A 35 1 8 HELIX 3 3 ASN A 40 LEU A 54 1 15 HELIX 4 4 SER A 56 GLY A 70 1 15 HELIX 5 5 ASP A 76 LEU A 90 1 15 HELIX 6 6 ASP A 92 GLY A 106 1 15 HELIX 7 7 ASN A 112 LEU A 126 1 15 HELIX 8 8 SER A 128 LEU A 135 1 8 SSBOND 1 CYS A 22 CYS A 30 1555 1555 1.97 SSBOND 2 CYS A 52 CYS A 60 1555 1555 2.04 SSBOND 3 CYS A 88 CYS A 96 1555 1555 1.98 SSBOND 4 CYS A 124 CYS A 132 1555 1555 1.94 CRYST1 51.360 51.360 205.941 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019470 0.011241 0.000000 0.00000 SCALE2 0.000000 0.022482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004856 0.00000 TER 1030 LEU A 135 HETATM 1031 O HOH A 139 12.521 18.819 25.991 1.00 21.80 O HETATM 1032 O HOH A 140 0.609 25.634 41.992 1.00 20.19 O HETATM 1033 O HOH A 141 11.539 22.246 25.912 1.00 22.87 O HETATM 1034 O HOH A 142 -3.489 27.702 46.550 1.00 23.41 O HETATM 1035 O HOH A 143 8.891 38.226 38.656 1.00 23.65 O HETATM 1036 O HOH A 144 13.839 24.886 31.907 1.00 26.17 O HETATM 1037 O HOH A 145 12.461 24.734 26.654 1.00 27.07 O HETATM 1038 O HOH A 146 3.210 12.056 33.921 1.00 29.37 O HETATM 1039 O HOH A 147 5.095 34.330 44.346 1.00 27.76 O HETATM 1040 O HOH A 148 11.873 23.993 31.649 1.00 32.77 O HETATM 1041 O HOH A 149 15.475 20.184 32.191 1.00 28.11 O HETATM 1042 O HOH A 150 5.033 11.205 35.917 1.00 30.42 O HETATM 1043 O HOH A 151 15.182 15.372 32.507 1.00 30.27 O HETATM 1044 O HOH A 152 6.239 15.900 43.069 1.00 29.22 O HETATM 1045 O HOH A 153 12.015 14.671 40.545 1.00 27.08 O HETATM 1046 O HOH A 154 5.047 12.802 12.966 1.00 37.49 O HETATM 1047 O HOH A 155 13.769 13.329 17.741 1.00 37.05 O HETATM 1048 O HOH A 156 -7.549 18.305 37.507 1.00 34.03 O HETATM 1049 O HOH A 157 8.846 9.123 36.636 1.00 33.70 O HETATM 1050 O HOH A 158 14.575 23.465 26.612 1.00 32.21 O HETATM 1051 O HOH A 159 0.472 21.871 20.833 1.00 34.47 O HETATM 1052 O HOH A 160 15.082 24.066 29.504 1.00 36.11 O HETATM 1053 O HOH A 161 -3.218 16.199 17.117 1.00 32.72 O HETATM 1054 O HOH A 162 10.891 21.930 47.482 1.00 35.92 O HETATM 1055 O HOH A 163 16.569 23.121 32.418 1.00 35.56 O HETATM 1056 O HOH A 164 0.637 20.780 47.633 1.00 39.63 O HETATM 1057 O HOH A 165 19.088 14.326 26.288 1.00 48.74 O HETATM 1058 O HOH A 166 16.079 20.347 27.665 1.00 33.87 O HETATM 1059 O HOH A 167 8.853 20.169 46.694 1.00 36.87 O HETATM 1060 O HOH A 168 2.536 25.627 14.652 1.00 37.59 O HETATM 1061 O HOH A 169 25.476 26.973 48.431 1.00 57.40 O HETATM 1062 O HOH A 170 -2.960 24.773 29.282 1.00 38.35 O HETATM 1063 O HOH A 171 -4.936 23.860 30.866 1.00 33.92 O HETATM 1064 O HOH A 172 2.102 22.715 28.412 1.00 36.04 O HETATM 1065 O HOH A 173 -6.815 24.111 42.866 1.00 35.78 O HETATM 1066 O HOH A 174 -3.447 20.289 -3.247 1.00 36.96 O HETATM 1067 O HOH A 175 -1.287 12.476 33.149 1.00 41.73 O HETATM 1068 O HOH A 176 2.715 21.669 50.184 1.00 30.70 O HETATM 1069 O HOH A 177 19.718 18.461 24.173 1.00 41.48 O HETATM 1070 O HOH A 178 0.527 9.240 28.172 1.00 40.01 O HETATM 1071 O HOH A 179 14.356 29.844 34.163 1.00 37.76 O HETATM 1072 O HOH A 180 22.593 29.868 44.182 1.00 36.86 O HETATM 1073 O HOH A 181 2.823 25.163 28.804 1.00 40.06 O HETATM 1074 O HOH A 182 8.790 16.676 43.938 1.00 38.40 O HETATM 1075 O HOH A 183 14.642 19.497 20.040 1.00 41.50 O HETATM 1076 O HOH A 184 6.820 31.430 55.231 1.00 42.10 O HETATM 1077 O HOH A 185 24.894 34.059 40.621 1.00 52.56 O HETATM 1078 O HOH A 186 6.896 10.434 39.814 1.00 41.87 O HETATM 1079 O HOH A 187 15.965 29.636 53.214 1.00 41.46 O HETATM 1080 O HOH A 188 6.728 13.171 42.091 1.00 43.65 O HETATM 1081 O HOH A 189 0.056 24.975 19.777 1.00 45.59 O HETATM 1082 O HOH A 190 14.517 19.546 44.021 1.00 44.94 O HETATM 1083 O HOH A 191 15.641 15.656 12.606 1.00 43.91 O HETATM 1084 O HOH A 192 20.129 24.122 33.412 1.00 42.58 O HETATM 1085 O HOH A 193 2.897 13.281 9.088 1.00 46.78 O HETATM 1086 O HOH A 194 -8.520 16.201 36.326 1.00 37.16 O HETATM 1087 O HOH A 195 0.328 17.671 -2.262 1.00 37.66 O HETATM 1088 O HOH A 196 2.385 11.403 37.838 1.00 45.93 O HETATM 1089 O HOH A 197 -10.854 24.603 35.190 1.00 36.59 O HETATM 1090 O HOH A 198 -5.441 25.597 46.058 1.00 37.95 O HETATM 1091 O HOH A 199 -14.240 24.235 27.139 1.00 50.69 O HETATM 1092 O HOH A 200 10.984 25.843 19.238 1.00 60.27 O HETATM 1093 O HOH A 201 2.177 19.894 45.731 1.00 70.94 O HETATM 1094 O HOH A 202 16.556 18.030 19.526 1.00 48.72 O HETATM 1095 O HOH A 203 11.148 15.225 43.082 1.00 42.92 O HETATM 1096 O HOH A 204 14.920 26.923 30.098 1.00 44.66 O HETATM 1097 O HOH A 205 18.657 19.243 44.794 1.00 39.09 O HETATM 1098 O HOH A 206 2.622 31.902 40.732 1.00 45.52 O HETATM 1099 O HOH A 207 -2.990 23.065 19.255 1.00 52.32 O HETATM 1100 O HOH A 208 6.144 22.358 49.424 1.00 44.37 O HETATM 1101 O HOH A 209 18.243 19.035 31.953 1.00 57.09 O HETATM 1102 O HOH A 210 9.186 30.968 56.139 1.00 44.82 O HETATM 1103 O HOH A 211 13.591 22.630 45.734 1.00 45.68 O HETATM 1104 O HOH A 212 -0.111 24.979 24.221 1.00 50.30 O HETATM 1105 O HOH A 213 -7.491 17.972 26.938 1.00 51.59 O HETATM 1106 O HOH A 214 4.323 29.812 35.260 1.00 67.79 O HETATM 1107 O HOH A 215 14.340 17.491 48.413 1.00 65.26 O HETATM 1108 O HOH A 216 -5.762 16.779 39.574 1.00 62.24 O HETATM 1109 O HOH A 217 -0.488 14.144 17.339 1.00 45.07 O HETATM 1110 O HOH A 218 -4.414 16.930 43.728 1.00 49.79 O HETATM 1111 O HOH A 219 -2.111 20.497 4.142 1.00 44.01 O HETATM 1112 O HOH A 220 14.854 32.354 34.326 1.00 44.46 O HETATM 1113 O HOH A 221 16.474 25.411 30.498 1.00 49.14 O HETATM 1114 O HOH A 222 16.601 16.974 43.990 1.00 54.79 O HETATM 1115 O HOH A 223 17.278 25.041 26.721 1.00 86.97 O HETATM 1116 O HOH A 224 21.181 20.697 41.929 1.00 52.43 O HETATM 1117 O HOH A 225 9.693 38.333 52.739 1.00 57.46 O HETATM 1118 O HOH A 226 22.195 18.346 43.962 1.00 46.91 O HETATM 1119 O HOH A 227 -7.636 23.757 21.562 1.00 58.45 O HETATM 1120 O HOH A 228 18.196 13.727 30.079 1.00 50.66 O HETATM 1121 O HOH A 229 -0.062 21.942 -0.230 1.00 40.74 O HETATM 1122 O HOH A 230 4.116 13.668 40.066 1.00 60.00 O HETATM 1123 O HOH A 231 7.677 13.661 45.981 1.00 45.77 O HETATM 1124 O HOH A 232 5.652 35.235 51.812 1.00 45.41 O HETATM 1125 O HOH A 233 22.221 13.273 40.413 1.00 45.95 O HETATM 1126 O HOH A 234 5.714 12.531 45.105 1.00 56.25 O HETATM 1127 O HOH A 235 1.094 23.954 -3.783 1.00 45.76 O HETATM 1128 O HOH A 236 5.874 22.108 52.829 1.00 54.58 O HETATM 1129 O HOH A 237 24.498 35.855 38.906 1.00 45.86 O HETATM 1130 O HOH A 238 16.444 14.136 18.650 1.00 46.45 O HETATM 1131 O HOH A 239 18.558 19.148 21.078 1.00 51.90 O HETATM 1132 O HOH A 240 -7.351 17.512 16.395 1.00 41.98 O HETATM 1133 O HOH A 241 4.295 8.651 22.541 1.00 49.65 O HETATM 1134 O HOH A 242 22.191 33.456 47.329 1.00 50.46 O HETATM 1135 O HOH A 243 18.614 16.922 30.042 1.00 47.90 O HETATM 1136 O HOH A 244 -3.999 26.792 21.360 1.00 53.63 O HETATM 1137 O HOH A 245 -2.319 16.274 13.495 1.00 49.66 O HETATM 1138 O HOH A 246 10.164 11.398 9.791 1.00 56.13 O HETATM 1139 O HOH A 247 1.915 11.847 14.632 1.00 47.00 O HETATM 1140 O HOH A 248 20.494 20.527 31.500 1.00 51.25 O HETATM 1141 O HOH A 249 9.007 23.186 56.611 1.00 60.98 O HETATM 1142 O HOH A 250 15.426 37.705 53.148 1.00 60.51 O HETATM 1143 O HOH A 251 14.603 15.464 44.507 1.00 67.31 O HETATM 1144 O HOH A 252 6.397 21.427 47.048 1.00 46.36 O HETATM 1145 O HOH A 253 -2.531 6.546 25.916 1.00 55.22 O HETATM 1146 O HOH A 254 -6.429 13.881 38.444 1.00 52.25 O HETATM 1147 O HOH A 255 18.104 33.102 32.612 1.00 41.52 O HETATM 1148 O HOH A 256 5.349 17.374 45.338 1.00 50.72 O HETATM 1149 O HOH A 257 12.333 36.163 52.228 1.00 52.99 O HETATM 1150 O HOH A 258 -11.822 23.503 31.665 1.00 43.96 O HETATM 1151 O HOH A 259 15.035 32.177 54.174 1.00 56.90 O HETATM 1152 O HOH A 260 0.716 28.910 28.108 1.00 51.97 O HETATM 1153 O HOH A 261 12.706 25.275 29.687 1.00 50.43 O HETATM 1154 O HOH A 262 12.065 36.554 55.331 1.00 51.68 O HETATM 1155 O HOH A 263 21.952 41.405 46.799 1.00 68.24 O HETATM 1156 O HOH A 264 -4.550 13.799 15.281 1.00 61.25 O HETATM 1157 O HOH A 265 10.202 8.265 10.776 1.00 58.38 O HETATM 1158 O HOH A 266 12.382 34.048 54.321 1.00 69.90 O HETATM 1159 O HOH A 267 3.807 36.689 58.077 1.00 54.16 O HETATM 1160 O HOH A 268 2.157 9.410 24.290 1.00 56.90 O HETATM 1161 O HOH A 269 21.613 18.496 33.815 1.00 55.49 O HETATM 1162 O HOH A 270 -5.713 22.243 44.198 1.00 51.61 O HETATM 1163 O HOH A 271 -0.286 22.157 -2.714 1.00 49.07 O HETATM 1164 O HOH A 272 9.647 33.588 56.994 1.00 50.21 O HETATM 1165 O HOH A 273 7.638 6.536 23.823 1.00 60.83 O HETATM 1166 O HOH A 274 1.812 14.208 40.758 1.00 54.22 O HETATM 1167 O HOH A 275 -4.925 20.643 16.062 1.00 48.37 O HETATM 1168 O HOH A 276 19.629 29.385 31.103 1.00 57.96 O HETATM 1169 O HOH A 277 7.144 23.376 14.983 1.00 41.23 O HETATM 1170 O HOH A 278 22.755 17.065 41.425 1.00 59.79 O HETATM 1171 O HOH A 279 9.925 13.155 12.406 1.00 56.60 O HETATM 1172 O HOH A 280 17.071 38.777 49.216 1.00 68.37 O HETATM 1173 O HOH A 281 -16.150 26.351 41.400 1.00 55.91 O HETATM 1174 O HOH A 282 -3.563 11.531 36.590 1.00 51.59 O HETATM 1175 O HOH A 283 -4.886 31.339 42.983 1.00 54.92 O HETATM 1176 O HOH A 284 11.608 39.657 54.002 1.00 54.72 O HETATM 1177 O HOH A 285 19.727 33.533 28.872 1.00 68.24 O HETATM 1178 O HOH A 286 19.119 18.283 28.107 1.00 52.80 O HETATM 1179 O HOH A 287 15.850 22.376 46.963 1.00 54.44 O HETATM 1180 O HOH A 288 4.578 14.205 46.805 1.00 52.75 O HETATM 1181 O HOH A 289 -7.607 29.552 42.036 1.00 66.86 O HETATM 1182 O HOH A 290 10.104 27.807 57.273 1.00 58.14 O HETATM 1183 O HOH A 291 19.678 19.834 46.945 1.00 55.05 O HETATM 1184 O HOH A 292 14.703 37.181 32.138 1.00 53.30 O HETATM 1185 O HOH A 293 -0.572 12.373 15.405 1.00 59.27 O HETATM 1186 O HOH A 294 0.450 34.702 49.475 1.00 41.92 O HETATM 1187 O HOH A 295 7.897 9.339 18.589 1.00 47.61 O HETATM 1188 O HOH A 296 28.838 30.204 39.470 1.00 53.44 O HETATM 1189 O HOH A 297 23.989 37.053 41.080 1.00 58.14 O HETATM 1190 O HOH A 298 0.489 11.165 34.264 1.00 48.04 O HETATM 1191 O HOH A 299 9.407 15.969 46.530 1.00 49.86 O HETATM 1192 O HOH A 300 0.991 27.609 18.612 1.00 49.27 O HETATM 1193 O HOH A 301 23.070 23.294 22.332 1.00 49.60 O HETATM 1194 O HOH A 302 -6.753 16.098 28.439 1.00 54.38 O HETATM 1195 O HOH A 303 4.766 28.687 31.789 1.00 53.86 O HETATM 1196 O HOH A 304 22.839 36.351 45.239 1.00 54.62 O HETATM 1197 O HOH A 305 14.440 37.614 55.537 1.00 59.30 O HETATM 1198 O HOH A 306 15.862 36.058 50.354 1.00 54.63 O HETATM 1199 O HOH A 307 22.632 22.485 41.588 1.00 53.51 O HETATM 1200 O HOH A 308 14.509 25.592 27.721 1.00 50.08 O HETATM 1201 O HOH A 309 -0.823 24.564 28.181 1.00 58.51 O HETATM 1202 O HOH A 310 -1.304 23.794 26.055 1.00 53.42 O HETATM 1203 O HOH A 311 23.437 28.448 46.354 1.00 58.43 O HETATM 1204 O HOH A 312 19.656 15.900 32.829 1.00 60.77 O HETATM 1205 O HOH A 313 -2.436 35.512 48.026 1.00 53.34 O HETATM 1206 O HOH A 314 -1.160 17.261 45.543 1.00 71.41 O HETATM 1207 O HOH A 315 2.839 14.915 7.297 1.00 52.24 O HETATM 1208 O HOH A 316 -6.255 25.473 20.746 1.00 61.55 O HETATM 1209 O HOH A 317 12.007 10.462 39.209 1.00 55.60 O HETATM 1210 O HOH A 318 1.019 10.040 17.869 1.00 60.04 O HETATM 1211 O HOH A 319 -0.205 8.453 18.172 1.00 54.16 O HETATM 1212 O HOH A 320 -0.945 11.913 38.900 1.00 66.56 O HETATM 1213 O HOH A 321 -0.971 25.887 3.402 1.00 64.81 O HETATM 1214 O HOH A 322 19.425 15.848 35.217 1.00 52.23 O HETATM 1215 O HOH A 323 -6.193 28.160 15.756 1.00 65.20 O HETATM 1216 O HOH A 324 -4.511 24.279 14.263 1.00 43.23 O HETATM 1217 O HOH A 325 -6.110 14.688 35.083 1.00 45.54 O HETATM 1218 O HOH A 326 13.049 27.334 26.581 1.00 50.01 O HETATM 1219 O HOH A 327 7.376 20.885 16.238 1.00 44.03 O CONECT 151 214 CONECT 214 151 CONECT 389 442 CONECT 442 389 CONECT 679 734 CONECT 734 679 CONECT 952 1009 CONECT 1009 952 MASTER 357 0 0 8 0 0 0 6 1218 1 8 11 END