data_1KMX # _entry.id 1KMX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KMX pdb_00001kmx 10.2210/pdb1kmx/pdb RCSB RCSB015124 ? ? WWPDB D_1000015124 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1vgh '1VGH is the same protein but refined without using residual dipolar coupling restraints' unspecified PDB 2vgh '2VGH is the minimized mean corresponding the the same protein refined without residual dipolar coupling restraints' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KMX _pdbx_database_status.recvd_initial_deposition_date 2001-12-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stauffer, M.E.' 1 'Skelton, N.J.' 2 'Fairbrother, W.J.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Refinement of the Solution Structure of the Heparin-binding Domain of Vascular Endothelial Growth Factor using Residual Dipolar Couplings ; J.BIOMOL.NMR 23 57 61 2002 JBNME9 NE 0925-2738 0800 ? 12061718 10.1023/A:1015346504499 1 'Solution Structure of the Heparin-binding Domain of Vascular endothelial Growth Factor' Structure 6 637 648 1998 STRUE6 UK 0969-2126 2005 ? ? '10.1016/S0969-2126(98)00065-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stauffer, M.E.' 1 ? primary 'Skelton, N.J.' 2 ? primary 'Fairbrother, W.J.' 3 ? 1 'Fairbrother, W.J.' 4 ? 1 'Champe, M.A.' 5 ? 1 'Christinger, H.W.' 6 ? 1 'Keyt, B.A.' 7 ? 1 'Starovasnik, M.A.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'vascular endothelial growth factor' _entity.formula_weight 6496.479 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'heparin-binding domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ARQENPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR _entity_poly.pdbx_seq_one_letter_code_can ARQENPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ARG n 1 3 GLN n 1 4 GLU n 1 5 ASN n 1 6 PRO n 1 7 CYS n 1 8 GLY n 1 9 PRO n 1 10 CYS n 1 11 SER n 1 12 GLU n 1 13 ARG n 1 14 ARG n 1 15 LYS n 1 16 HIS n 1 17 LEU n 1 18 PHE n 1 19 VAL n 1 20 GLN n 1 21 ASP n 1 22 PRO n 1 23 GLN n 1 24 THR n 1 25 CYS n 1 26 LYS n 1 27 CYS n 1 28 SER n 1 29 CYS n 1 30 LYS n 1 31 ASN n 1 32 THR n 1 33 ASP n 1 34 SER n 1 35 ARG n 1 36 CYS n 1 37 LYS n 1 38 ALA n 1 39 ARG n 1 40 GLN n 1 41 LEU n 1 42 GLU n 1 43 LEU n 1 44 ASN n 1 45 GLU n 1 46 ARG n 1 47 THR n 1 48 CYS n 1 49 ARG n 1 50 CYS n 1 51 ASP n 1 52 LYS n 1 53 PRO n 1 54 ARG n 1 55 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VEGFA_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ARQENPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR _struct_ref.pdbx_align_begin 137 _struct_ref.pdbx_db_accession P15692 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KMX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 55 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15692 _struct_ref_seq.db_align_beg 137 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 191 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 55 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 '2D NOESY' 3 2 2 3D_15N-separated_NOESY 4 2 2 HNHA 5 3 3 DQF-COSY 6 3 3 '2D NOESY' 7 2 2 '2D 15N IPAP-HSQC' 8 4 4 '2D 15N IPAP HSQC' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 300 ambient 5.5 '25 mM sodium acetate; 50 mM sodium chloride' ? K 2 300 ambient 5.5 '25 mM sodium acetate; 50 mM sodium chloride' ? K 3 300 ambient 5.5 '25 mM sodium acetate; 50 mM sodium chloride' ? K 4 300 ambient 5.5 '25 mM sodium acetate; 50 mM sodium chloride' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2.0 mM VEGF heparin-binding domain; 25 mM sodium acetate; 50 mM sodium chloride, 0.02% sodium azide' '90% H2O/10% D2O' 2 '2.0 mM VEGF heparin-binding domain U-15N; 25 mM sodium acetate; 50 mM sodium chloride, 0.02% sodium azide' '90% H2O/10% D2O' 3 '2.0 mM VEGF heparin-binding domain U-15N; 25 mM sodium acetate; 50 mM sodium chloride, 0.02% sodium azide' '99.9% D2O' 4 '0.6 mM VEGF heparin-binding domain U-15N; 25 mM sodium acetate; 50 mM sodium chloride; 0.02% sodium azide' ;4:1:0.2 ditridecanoyl-phosphatidylcholine/dihexanoyl-phosphatidylcholine/cetyltrimethylammonium bromide, 5% w/v total lipid in 90% H2O, 10% D2O ; # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker AMX 500 2 ? Bruker DRX 500 # _pdbx_nmr_refine.entry_id 1KMX _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ;The structures are based on 459 NOE-derived distance restraints, 28 H-bond restraints, 66 dihedral angle restraints, and 38 residual dipolar coupling restraints ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1KMX _pdbx_nmr_details.text 'The structure was refined using 1H-15N dipolar coupling restraints' # _pdbx_nmr_ensemble.entry_id 1KMX _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1KMX _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal UXNMR ? collection ? 1 XwinNMR ? collection ? 2 Felix ? processing ? 3 Felix ? 'data analysis' ? 4 CNX ? 'structure solution' ? 5 CNX ? refinement 'Molecular Simulations, Inc.' 6 # _exptl.entry_id 1KMX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1KMX _struct.title 'Heparin-binding Domain from Vascular Endothelial Growth Factor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KMX _struct_keywords.pdbx_keywords 'HORMONE/GROWTH FACTOR' _struct_keywords.text 'heparin-binding, angiogenesis, growth factor, HORMONE-GROWTH FACTOR COMPLEX' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 32 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 38 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 32 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 38 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 25 SG ? ? A CYS 7 A CYS 25 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 27 SG ? ? A CYS 10 A CYS 27 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 48 SG ? ? A CYS 29 A CYS 48 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf4 disulf ? ? A CYS 36 SG ? ? ? 1_555 A CYS 50 SG ? ? A CYS 36 A CYS 50 1_555 ? ? ? ? ? ? ? 2.030 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 18 ? GLN A 20 ? PHE A 18 GLN A 20 A 2 CYS A 27 ? CYS A 29 ? CYS A 27 CYS A 29 B 1 GLU A 42 ? ASN A 44 ? GLU A 42 ASN A 44 B 2 ARG A 49 ? ASP A 51 ? ARG A 49 ASP A 51 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 19 ? N VAL A 19 O SER A 28 ? O SER A 28 B 1 2 N ASN A 44 ? N ASN A 44 O ARG A 49 ? O ARG A 49 # _database_PDB_matrix.entry_id 1KMX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KMX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ARG 55 55 55 ARG ARG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-07-24 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 3 ? ? -160.20 -71.95 2 1 GLU A 4 ? ? 68.09 79.42 3 1 CYS A 10 ? ? -91.73 -71.97 4 1 SER A 11 ? ? -90.55 -159.16 5 1 GLU A 12 ? ? -125.04 -70.82 6 1 ARG A 14 ? ? -94.96 58.72 7 1 ARG A 54 ? ? -163.65 -69.29 8 2 ARG A 2 ? ? 61.61 176.17 9 2 PRO A 9 ? ? -45.43 172.32 10 2 CYS A 10 ? ? -90.31 -82.83 11 2 ARG A 13 ? ? -127.76 -59.40 12 2 ARG A 14 ? ? -90.60 59.22 13 2 ARG A 54 ? ? -159.83 -48.35 14 3 PRO A 9 ? ? -56.61 174.85 15 3 CYS A 10 ? ? -90.10 -79.70 16 3 ARG A 13 ? ? -141.76 -71.49 17 3 ARG A 14 ? ? -158.46 45.22 18 3 HIS A 16 ? ? -161.16 -46.36 19 3 PRO A 22 ? ? -89.68 39.40 20 3 GLN A 23 ? ? -148.82 -49.24 21 3 PRO A 53 ? ? -85.48 -75.09 22 3 ARG A 54 ? ? -154.53 -140.42 23 4 ARG A 2 ? ? 60.72 -166.23 24 4 GLN A 3 ? ? 58.72 73.61 25 4 GLU A 4 ? ? -141.21 33.98 26 4 ARG A 14 ? ? -67.84 83.51 27 4 LYS A 15 ? ? -41.52 176.55 28 4 HIS A 16 ? ? -153.68 -48.14 29 4 ARG A 54 ? ? -159.14 -92.12 30 5 ARG A 2 ? ? -89.56 -159.57 31 5 GLU A 4 ? ? 64.98 112.39 32 5 ASN A 5 ? ? -150.21 85.63 33 5 PRO A 9 ? ? -47.97 178.84 34 5 CYS A 10 ? ? -90.08 -93.65 35 5 GLU A 12 ? ? -141.82 32.17 36 5 ARG A 13 ? ? -150.49 -43.69 37 5 ARG A 14 ? ? -152.61 60.58 38 5 LEU A 17 ? ? -97.08 44.70 39 5 ARG A 54 ? ? -139.16 -54.54 40 6 CYS A 10 ? ? -90.37 -64.83 41 6 ARG A 13 ? ? -138.71 -46.90 42 6 ARG A 14 ? ? -93.47 59.07 43 6 ARG A 54 ? ? -142.42 -69.51 44 7 ARG A 2 ? ? -159.28 -45.58 45 7 PRO A 6 ? ? -58.15 -156.45 46 7 PRO A 9 ? ? -72.45 -169.45 47 7 CYS A 10 ? ? -88.67 -76.16 48 7 SER A 11 ? ? -88.48 -76.80 49 7 GLU A 12 ? ? -156.97 -67.21 50 7 ARG A 13 ? ? -142.36 -48.44 51 7 HIS A 16 ? ? -165.04 -44.95 52 7 PRO A 22 ? ? -91.21 32.52 53 7 GLN A 23 ? ? -137.37 -48.93 54 7 ARG A 54 ? ? -148.28 -63.96 55 8 ARG A 2 ? ? -154.83 35.14 56 8 GLU A 4 ? ? -99.08 43.02 57 8 CYS A 10 ? ? -90.11 -75.02 58 8 SER A 11 ? ? -89.96 -74.54 59 8 GLU A 12 ? ? -162.77 -67.06 60 8 ARG A 13 ? ? -144.37 -49.09 61 8 LYS A 15 ? ? -38.48 137.13 62 8 HIS A 16 ? ? -163.38 -44.44 63 8 PRO A 22 ? ? -91.11 34.91 64 8 GLN A 23 ? ? -142.52 -50.09 65 9 ARG A 2 ? ? -92.82 -63.41 66 9 GLN A 3 ? ? -66.74 -75.10 67 9 PRO A 6 ? ? -61.26 -148.79 68 9 PRO A 9 ? ? -51.43 -175.82 69 9 CYS A 10 ? ? -89.98 -77.26 70 9 GLU A 12 ? ? -158.54 -94.98 71 9 ARG A 13 ? ? -150.56 68.34 72 9 ARG A 14 ? ? 178.43 -37.13 73 9 LYS A 15 ? ? -60.77 62.63 74 9 ARG A 54 ? ? -65.86 78.52 75 10 GLU A 12 ? ? 77.54 -53.61 76 10 LYS A 15 ? ? -64.01 92.92 77 10 PRO A 22 ? ? -84.02 38.79 78 10 GLN A 23 ? ? -148.77 -48.70 79 11 GLN A 3 ? ? 62.08 -157.27 80 11 GLU A 4 ? ? -173.50 16.32 81 11 CYS A 10 ? ? -90.27 -61.64 82 11 SER A 11 ? ? -89.76 -93.14 83 11 GLU A 12 ? ? 178.15 -40.39 84 11 ARG A 13 ? ? -144.83 12.89 85 11 PRO A 22 ? ? -89.58 36.91 86 11 GLN A 23 ? ? -150.13 -49.21 87 12 SER A 11 ? ? -59.45 -177.31 88 12 ARG A 13 ? ? -129.33 -165.75 89 12 ARG A 14 ? ? -62.37 85.08 90 12 LYS A 15 ? ? -56.06 72.50 91 12 PRO A 22 ? ? -88.95 40.85 92 12 GLN A 23 ? ? -149.57 -47.71 93 12 PRO A 53 ? ? -72.06 -168.46 94 13 ARG A 2 ? ? -67.06 91.76 95 13 GLU A 12 ? ? -141.59 36.69 96 13 ARG A 13 ? ? -132.94 -75.01 97 14 GLU A 4 ? ? -173.90 129.52 98 14 PRO A 6 ? ? -58.29 -155.97 99 14 SER A 11 ? ? -90.09 -75.36 100 14 GLU A 12 ? ? -175.31 -85.09 101 14 ARG A 13 ? ? -150.63 -59.17 102 14 LYS A 15 ? ? -65.73 69.24 103 14 PRO A 22 ? ? -89.50 32.81 104 14 GLN A 23 ? ? -142.11 -49.93 105 15 ARG A 2 ? ? -162.31 99.94 106 15 GLU A 12 ? ? 59.65 -168.18 107 15 LYS A 15 ? ? -44.95 165.29 108 15 HIS A 16 ? ? -168.26 -50.97 109 15 PRO A 22 ? ? -89.91 38.69 110 15 GLN A 23 ? ? -150.40 -48.77 111 15 ARG A 54 ? ? -148.30 -49.64 112 16 ARG A 2 ? ? -156.85 32.39 113 16 PRO A 9 ? ? -50.41 173.35 114 16 CYS A 10 ? ? -90.04 -87.67 115 16 GLU A 12 ? ? -142.86 48.75 116 16 ARG A 13 ? ? -146.94 -75.18 117 16 ARG A 14 ? ? -141.28 37.73 118 16 HIS A 16 ? ? -166.83 -44.64 119 16 PRO A 22 ? ? -90.35 31.10 120 16 GLN A 23 ? ? -135.29 -47.82 121 16 ARG A 54 ? ? -161.08 91.50 122 17 ARG A 2 ? ? 60.88 157.08 123 17 GLN A 3 ? ? -101.83 -61.34 124 17 GLU A 4 ? ? -93.98 59.18 125 17 ASN A 5 ? ? -150.19 87.22 126 17 PRO A 6 ? ? -56.74 179.28 127 17 PRO A 9 ? ? -45.15 153.33 128 17 GLU A 12 ? ? -163.58 -164.46 129 17 LYS A 15 ? ? -68.51 65.18 130 17 ARG A 54 ? ? -98.86 -85.95 131 18 GLN A 3 ? ? -65.51 -158.19 132 18 GLU A 4 ? ? 67.14 -152.27 133 18 SER A 11 ? ? -91.41 37.53 134 18 GLU A 12 ? ? 67.86 -68.20 135 18 ARG A 13 ? ? -146.26 -44.70 136 18 LYS A 15 ? ? -37.14 133.45 137 18 HIS A 16 ? ? -178.47 -43.82 138 18 PRO A 22 ? ? -89.54 33.56 139 18 GLN A 23 ? ? -146.86 -49.41 140 18 PRO A 53 ? ? -79.97 -168.55 141 19 GLN A 3 ? ? -170.50 -168.03 142 19 GLU A 4 ? ? 62.81 123.70 143 19 CYS A 10 ? ? -90.56 -64.69 144 19 ARG A 13 ? ? -150.15 -71.08 145 19 ARG A 14 ? ? -158.82 34.48 146 19 HIS A 16 ? ? -166.32 -45.41 147 19 ARG A 54 ? ? -152.37 24.82 148 20 PRO A 9 ? ? -68.02 -175.18 149 20 CYS A 10 ? ? -90.59 -84.76 150 20 ARG A 13 ? ? -150.00 -70.52 151 20 PRO A 53 ? ? -87.25 -72.37 152 20 ARG A 54 ? ? -155.62 -134.87 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 55 ? O ? A ARG 55 O 2 2 Y 1 A ARG 55 ? O ? A ARG 55 O 3 3 Y 1 A ARG 55 ? O ? A ARG 55 O 4 4 Y 1 A ARG 55 ? O ? A ARG 55 O 5 5 Y 1 A ARG 55 ? O ? A ARG 55 O 6 6 Y 1 A ARG 55 ? O ? A ARG 55 O 7 7 Y 1 A ARG 55 ? O ? A ARG 55 O 8 8 Y 1 A ARG 55 ? O ? A ARG 55 O 9 9 Y 1 A ARG 55 ? O ? A ARG 55 O 10 10 Y 1 A ARG 55 ? O ? A ARG 55 O 11 11 Y 1 A ARG 55 ? O ? A ARG 55 O 12 12 Y 1 A ARG 55 ? O ? A ARG 55 O 13 13 Y 1 A ARG 55 ? O ? A ARG 55 O 14 14 Y 1 A ARG 55 ? O ? A ARG 55 O 15 15 Y 1 A ARG 55 ? O ? A ARG 55 O 16 16 Y 1 A ARG 55 ? O ? A ARG 55 O 17 17 Y 1 A ARG 55 ? O ? A ARG 55 O 18 18 Y 1 A ARG 55 ? O ? A ARG 55 O 19 19 Y 1 A ARG 55 ? O ? A ARG 55 O 20 20 Y 1 A ARG 55 ? O ? A ARG 55 O #