data_1KOD
# 
_entry.id   1KOD 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.381 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1KOD         pdb_00001kod 10.2210/pdb1kod/pdb 
WWPDB D_1000174468 ?            ?                   
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          1KOC 
_pdbx_database_related.details        '1 STRUCTURE' 
_pdbx_database_related.content_type   unspecified 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1KOD 
_pdbx_database_status.recvd_initial_deposition_date   1996-03-28 
_pdbx_database_status.deposit_site                    ? 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Yang, Y.S.'      1 
'Kochoyan, M.'    2 
'Burgstaller, P.' 3 
'Westhof, E.'     4 
'Famulok, M.'     5 
# 
loop_
_citation.id 
_citation.title 
_citation.journal_abbrev 
_citation.journal_volume 
_citation.page_first 
_citation.page_last 
_citation.year 
_citation.journal_id_ASTM 
_citation.country 
_citation.journal_id_ISSN 
_citation.journal_id_CSD 
_citation.book_publisher 
_citation.pdbx_database_id_PubMed 
_citation.pdbx_database_id_DOI 
primary 'Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy.' Science              
272 1343 1347 1996 SCIEAS US 0036-8075 0038 ? 8650546 ? 
1       
;Structural Probing and Damage Selection of Citrulline-and Arginine-Specific RNA Aptamers Identify Base Positions Required for Binding
;
'Nucleic Acids Res.' 23  4769 ?    1995 NARHAD UK 0305-1048 0389 ? ?       ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Yang, Y.'        1 ? 
primary 'Kochoyan, M.'    2 ? 
primary 'Burgstaller, P.' 3 ? 
primary 'Westhof, E.'     4 ? 
primary 'Famulok, M.'     5 ? 
1       'Burgstaller, P.' 6 ? 
1       'Kochoyan, M.'    7 ? 
1       'Famulok, M.'     8 ? 
# 
_cell.entry_id           1KOD 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1KOD 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;RNA (5'-R(P*AP*GP*AP*AP*GP*GP*AP*GP*UP*GP*U)-3')
;
3610.226 1 ? ? ? ? 
2 polymer     syn 
;RNA (5'-R(P*AP*CP*GP*GP*UP*UP*AP*GP*GP*UP*CP*GP*CP*U)-3')
;
4479.691 1 ? ? ? ? 
3 non-polymer syn CITRULLINE                                                  175.186  1 ? ? ? ? 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polyribonucleotide no no AGAAGGAGUGU    AGAAGGAGUGU    A ? 
2 polyribonucleotide no no ACGGUUAGGUCGCU ACGGUUAGGUCGCU B ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  A n 
1 2  G n 
1 3  A n 
1 4  A n 
1 5  G n 
1 6  G n 
1 7  A n 
1 8  G n 
1 9  U n 
1 10 G n 
1 11 U n 
2 1  A n 
2 2  C n 
2 3  G n 
2 4  G n 
2 5  U n 
2 6  U n 
2 7  A n 
2 8  G n 
2 9  G n 
2 10 U n 
2 11 C n 
2 12 G n 
2 13 C n 
2 14 U n 
# 
loop_
_struct_ref.id 
_struct_ref.entity_id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_db_isoform 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_align_begin 
1 1 PDB 1KOD 1KOD ? ? ? 
2 2 PDB 1KOD 1KOD ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1KOD A 1 ? 11 ? 1KOD 5  ? 15 ? 5  15 
2 2 1KOD B 1 ? 14 ? 1KOD 27 ? 40 ? 27 40 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A   'RNA linking'       y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
C   'RNA linking'       y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
CIR 'L-peptide linking' n CITRULLINE                   ? 'C6 H13 N3 O3'    175.186 
G   'RNA linking'       y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
U   'RNA linking'       y "URIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O9 P'  324.181 
# 
_pdbx_nmr_ensemble.entry_id                             1KOD 
_pdbx_nmr_ensemble.conformers_calculated_total_number   ? 
_pdbx_nmr_ensemble.conformers_submitted_total_number    1 
_pdbx_nmr_ensemble.conformer_selection_criteria         ? 
# 
_pdbx_nmr_software.classification   refinement 
_pdbx_nmr_software.name             NUCLSQ 
_pdbx_nmr_software.version          ? 
_pdbx_nmr_software.authors          WESTHOF,DUMAS,MORAS 
_pdbx_nmr_software.ordinal          1 
# 
_exptl.entry_id          1KOD 
_exptl.method            'SOLUTION NMR' 
_exptl.crystals_number   ? 
# 
_struct.entry_id                  1KOD 
_struct.title                     'RNA APTAMER COMPLEXED WITH CITRULLINE, NMR' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1KOD 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'IN VITRO SELECTED RNA, RNA APTAMER, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A A 1  N1 ? ? ? 1_555 B U 14 N3 ? ? A A 5  B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog2  hydrog ? ? A A 1  N6 ? ? ? 1_555 B U 14 O4 ? ? A A 5  B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog3  hydrog ? ? A G 2  N1 ? ? ? 1_555 B C 13 N3 ? ? A G 6  B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog4  hydrog ? ? A G 2  N2 ? ? ? 1_555 B C 13 O2 ? ? A G 6  B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog5  hydrog ? ? A G 2  O6 ? ? ? 1_555 B C 13 N4 ? ? A G 6  B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog6  hydrog ? ? A G 2  N1 ? ? ? 1_555 B U 14 O2 ? ? A G 6  B U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? 
hydrog7  hydrog ? ? A A 3  N1 ? ? ? 1_555 B G 12 N1 ? ? A A 7  B G 38 1_555 ? ? ? ? ? ? TYPE_8_PAIR   ? ? ? 
hydrog8  hydrog ? ? A A 3  N6 ? ? ? 1_555 B G 12 O6 ? ? A A 7  B G 38 1_555 ? ? ? ? ? ? TYPE_8_PAIR   ? ? ? 
hydrog9  hydrog ? ? A A 3  N6 ? ? ? 1_555 B C 13 N3 ? ? A A 7  B C 39 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? 
hydrog10 hydrog ? ? A G 5  N1 ? ? ? 1_555 A G 8  N7 ? ? A G 9  A G 12 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? 
hydrog11 hydrog ? ? A G 6  N1 ? ? ? 1_555 B C 11 O2 ? ? A G 10 B C 37 1_555 ? ? ? ? ? ? 'G-C PAIR'    ? ? ? 
hydrog12 hydrog ? ? A A 7  N6 ? ? ? 1_555 B G 4  O6 ? ? A A 11 B G 30 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? 
hydrog13 hydrog ? ? A A 7  N1 ? ? ? 1_555 B U 10 N3 ? ? A A 11 B U 36 1_555 ? ? ? ? ? ? 'A-U PAIR'    ? ? ? 
hydrog14 hydrog ? ? A G 8  N1 ? ? ? 1_555 B G 9  O6 ? ? A G 12 B G 35 1_555 ? ? ? ? ? ? TYPE_6_PAIR   ? ? ? 
hydrog15 hydrog ? ? A G 8  N2 ? ? ? 1_555 B G 9  N7 ? ? A G 12 B G 35 1_555 ? ? ? ? ? ? TYPE_6_PAIR   ? ? ? 
hydrog16 hydrog ? ? A U 9  O4 ? ? ? 1_555 B G 3  N1 ? ? A U 13 B G 29 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? 
hydrog17 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 2  N3 ? ? A G 14 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog18 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 2  O2 ? ? A G 14 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog19 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 2  N4 ? ? A G 14 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog20 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 1  N1 ? ? A U 15 B A 27 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog21 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 1  N6 ? ? A U 15 B A 27 1_555 ? ? ? ? ? ? WATSON-CRICK  ? ? ? 
hydrog22 hydrog ? ? B A 7  N3 ? ? ? 1_555 B G 9  N1 ? ? B A 33 B G 35 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? 
hydrog23 hydrog ? ? B G 8  O6 ? ? ? 1_555 B C 11 N4 ? ? B G 34 B C 37 1_555 ? ? ? ? ? ? 'G-C PAIR'    ? ? ? 
hydrog24 hydrog ? ? B G 8  N1 ? ? ? 1_555 B G 12 O6 ? ? B G 34 B G 38 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
_struct_site.id                   AC1 
_struct_site.pdbx_evidence_code   Software 
_struct_site.pdbx_auth_asym_id    B 
_struct_site.pdbx_auth_comp_id    CIR 
_struct_site.pdbx_auth_seq_id     1 
_struct_site.pdbx_auth_ins_code   ? 
_struct_site.pdbx_num_residues    6 
_struct_site.details              'BINDING SITE FOR RESIDUE CIR B 1' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1 AC1 6 G A 8 ? G A 12 . ? 1_555 ? 
2 AC1 6 U A 9 ? U A 13 . ? 1_555 ? 
3 AC1 6 G B 4 ? G B 30 . ? 1_555 ? 
4 AC1 6 U B 5 ? U B 31 . ? 1_555 ? 
5 AC1 6 A B 7 ? A B 33 . ? 1_555 ? 
6 AC1 6 G B 9 ? G B 35 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          1KOD 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    1KOD 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  A 1  5  5  A A A . n 
A 1 2  G 2  6  6  G G A . n 
A 1 3  A 3  7  7  A A A . n 
A 1 4  A 4  8  8  A A A . n 
A 1 5  G 5  9  9  G G A . n 
A 1 6  G 6  10 10 G G A . n 
A 1 7  A 7  11 11 A A A . n 
A 1 8  G 8  12 12 G G A . n 
A 1 9  U 9  13 13 U U A . n 
A 1 10 G 10 14 14 G G A . n 
A 1 11 U 11 15 15 U U A . n 
B 2 1  A 1  27 27 A A B . n 
B 2 2  C 2  28 28 C C B . n 
B 2 3  G 3  29 29 G G B . n 
B 2 4  G 4  30 30 G G B . n 
B 2 5  U 5  31 31 U U B . n 
B 2 6  U 6  32 32 U U B . n 
B 2 7  A 7  33 33 A A B . n 
B 2 8  G 8  34 34 G G B . n 
B 2 9  G 9  35 35 G G B . n 
B 2 10 U 10 36 36 U U B . n 
B 2 11 C 11 37 37 C C B . n 
B 2 12 G 12 38 38 G G B . n 
B 2 13 C 13 39 39 C C B . n 
B 2 14 U 14 40 40 U U B . n 
# 
_pdbx_nonpoly_scheme.asym_id         C 
_pdbx_nonpoly_scheme.entity_id       3 
_pdbx_nonpoly_scheme.mon_id          CIR 
_pdbx_nonpoly_scheme.ndb_seq_num     1 
_pdbx_nonpoly_scheme.pdb_seq_num     1 
_pdbx_nonpoly_scheme.auth_seq_num    1 
_pdbx_nonpoly_scheme.pdb_mon_id      CIR 
_pdbx_nonpoly_scheme.auth_mon_id     CIR 
_pdbx_nonpoly_scheme.pdb_strand_id   B 
_pdbx_nonpoly_scheme.pdb_ins_code    . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1996-11-08 
2 'Structure model' 1 1 2008-03-24 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2022-02-23 
5 'Structure model' 2 0 2023-11-15 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Database references'       
4 4 'Structure model' 'Derived calculations'      
5 4 'Structure model' Other                       
6 5 'Structure model' 'Atomic model'              
7 5 'Structure model' 'Data collection'           
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' database_2            
2 4 'Structure model' pdbx_database_status  
3 4 'Structure model' pdbx_struct_assembly  
4 4 'Structure model' pdbx_struct_oper_list 
5 4 'Structure model' struct_site           
6 5 'Structure model' atom_site             
7 5 'Structure model' chem_comp_atom        
8 5 'Structure model' chem_comp_bond        
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
3 4 'Structure model' '_pdbx_database_status.process_site'  
4 4 'Structure model' '_struct_site.pdbx_auth_asym_id'      
5 4 'Structure model' '_struct_site.pdbx_auth_comp_id'      
6 4 'Structure model' '_struct_site.pdbx_auth_seq_id'       
7 5 'Structure model' '_atom_site.auth_atom_id'             
8 5 'Structure model' '_atom_site.label_atom_id'            
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
X-PLOR 'model building' . ? 1 
X-PLOR refinement       . ? 2 
X-PLOR phasing          . ? 3 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 OP1   A A 5  ? ? P     A A 5  ? ? OP2   A A 5  ? ? 110.34 119.60 -9.26 1.50 N 
2  1 "C3'" A A 5  ? ? "C2'" A A 5  ? ? "C1'" A A 5  ? ? 106.35 101.50 4.85  0.80 N 
3  1 N7    A A 5  ? ? C8    A A 5  ? ? N9    A A 5  ? ? 117.65 113.80 3.85  0.50 N 
4  1 "C3'" A G 6  ? ? "C2'" A G 6  ? ? "C1'" A G 6  ? ? 106.47 101.50 4.97  0.80 N 
5  1 N7    A G 6  ? ? C8    A G 6  ? ? N9    A G 6  ? ? 117.73 113.10 4.63  0.50 N 
6  1 C8    A G 6  ? ? N9    A G 6  ? ? C4    A G 6  ? ? 103.67 106.40 -2.73 0.40 N 
7  1 N7    A A 7  ? ? C8    A A 7  ? ? N9    A A 7  ? ? 117.50 113.80 3.70  0.50 N 
8  1 N7    A A 8  ? ? C8    A A 8  ? ? N9    A A 8  ? ? 117.57 113.80 3.77  0.50 N 
9  1 N7    A G 9  ? ? C8    A G 9  ? ? N9    A G 9  ? ? 117.77 113.10 4.67  0.50 N 
10 1 N7    A G 10 ? ? C8    A G 10 ? ? N9    A G 10 ? ? 117.52 113.10 4.42  0.50 N 
11 1 C8    A G 10 ? ? N9    A G 10 ? ? C4    A G 10 ? ? 103.54 106.40 -2.86 0.40 N 
12 1 N7    A A 11 ? ? C8    A A 11 ? ? N9    A A 11 ? ? 117.79 113.80 3.99  0.50 N 
13 1 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9    A G 12 ? ? 113.11 108.50 4.61  0.70 N 
14 1 N7    A G 12 ? ? C8    A G 12 ? ? N9    A G 12 ? ? 117.55 113.10 4.45  0.50 N 
15 1 C8    A G 12 ? ? N9    A G 12 ? ? C4    A G 12 ? ? 103.67 106.40 -2.73 0.40 N 
16 1 N7    A G 14 ? ? C8    A G 14 ? ? N9    A G 14 ? ? 118.19 113.10 5.09  0.50 N 
17 1 C8    A G 14 ? ? N9    A G 14 ? ? C4    A G 14 ? ? 103.64 106.40 -2.76 0.40 N 
18 1 "C3'" A U 15 ? ? "C2'" A U 15 ? ? "C1'" A U 15 ? ? 106.41 101.50 4.91  0.80 N 
19 1 OP1   B A 27 ? ? P     B A 27 ? ? OP2   B A 27 ? ? 110.35 119.60 -9.25 1.50 N 
20 1 N7    B A 27 ? ? C8    B A 27 ? ? N9    B A 27 ? ? 117.47 113.80 3.67  0.50 N 
21 1 N7    B G 29 ? ? C8    B G 29 ? ? N9    B G 29 ? ? 117.63 113.10 4.53  0.50 N 
22 1 C8    B G 29 ? ? N9    B G 29 ? ? C4    B G 29 ? ? 103.61 106.40 -2.79 0.40 N 
23 1 "C3'" B G 30 ? ? "C2'" B G 30 ? ? "C1'" B G 30 ? ? 106.40 101.50 4.90  0.80 N 
24 1 N7    B G 30 ? ? C8    B G 30 ? ? N9    B G 30 ? ? 117.42 113.10 4.32  0.50 N 
25 1 C8    B G 30 ? ? N9    B G 30 ? ? C4    B G 30 ? ? 103.62 106.40 -2.78 0.40 N 
26 1 "C3'" B U 31 ? ? "C2'" B U 31 ? ? "C1'" B U 31 ? ? 106.42 101.50 4.92  0.80 N 
27 1 "C3'" B U 32 ? ? "C2'" B U 32 ? ? "C1'" B U 32 ? ? 106.37 101.50 4.87  0.80 N 
28 1 N7    B A 33 ? ? C8    B A 33 ? ? N9    B A 33 ? ? 117.60 113.80 3.80  0.50 N 
29 1 N7    B G 34 ? ? C8    B G 34 ? ? N9    B G 34 ? ? 117.93 113.10 4.83  0.50 N 
30 1 C8    B G 34 ? ? N9    B G 34 ? ? C4    B G 34 ? ? 103.45 106.40 -2.95 0.40 N 
31 1 "O4'" B G 35 ? ? "C1'" B G 35 ? ? N9    B G 35 ? ? 114.58 108.50 6.08  0.70 N 
32 1 N7    B G 35 ? ? C8    B G 35 ? ? N9    B G 35 ? ? 118.57 113.10 5.47  0.50 N 
33 1 C8    B G 35 ? ? N9    B G 35 ? ? C4    B G 35 ? ? 103.59 106.40 -2.81 0.40 N 
34 1 "O4'" B U 36 ? ? "C1'" B U 36 ? ? N1    B U 36 ? ? 113.03 108.50 4.53  0.70 N 
35 1 N7    B G 38 ? ? C8    B G 38 ? ? N9    B G 38 ? ? 117.51 113.10 4.41  0.50 N 
36 1 C8    B G 38 ? ? N9    B G 38 ? ? C4    B G 38 ? ? 103.88 106.40 -2.52 0.40 N 
37 1 "C3'" B C 39 ? ? "C2'" B C 39 ? ? "C1'" B C 39 ? ? 106.92 101.50 5.42  0.80 N 
38 1 "O4'" B C 39 ? ? "C1'" B C 39 ? ? N1    B C 39 ? ? 112.90 108.50 4.40  0.70 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A   OP3    O N N 1   
A   P      P N N 2   
A   OP1    O N N 3   
A   OP2    O N N 4   
A   "O5'"  O N N 5   
A   "C5'"  C N N 6   
A   "C4'"  C N R 7   
A   "O4'"  O N N 8   
A   "C3'"  C N S 9   
A   "O3'"  O N N 10  
A   "C2'"  C N R 11  
A   "O2'"  O N N 12  
A   "C1'"  C N R 13  
A   N9     N Y N 14  
A   C8     C Y N 15  
A   N7     N Y N 16  
A   C5     C Y N 17  
A   C6     C Y N 18  
A   N6     N N N 19  
A   N1     N Y N 20  
A   C2     C Y N 21  
A   N3     N Y N 22  
A   C4     C Y N 23  
A   HOP3   H N N 24  
A   HOP2   H N N 25  
A   "H5'"  H N N 26  
A   "H5''" H N N 27  
A   "H4'"  H N N 28  
A   "H3'"  H N N 29  
A   "HO3'" H N N 30  
A   "H2'"  H N N 31  
A   "HO2'" H N N 32  
A   "H1'"  H N N 33  
A   H8     H N N 34  
A   H61    H N N 35  
A   H62    H N N 36  
A   H2     H N N 37  
C   OP3    O N N 38  
C   P      P N N 39  
C   OP1    O N N 40  
C   OP2    O N N 41  
C   "O5'"  O N N 42  
C   "C5'"  C N N 43  
C   "C4'"  C N R 44  
C   "O4'"  O N N 45  
C   "C3'"  C N S 46  
C   "O3'"  O N N 47  
C   "C2'"  C N R 48  
C   "O2'"  O N N 49  
C   "C1'"  C N R 50  
C   N1     N N N 51  
C   C2     C N N 52  
C   O2     O N N 53  
C   N3     N N N 54  
C   C4     C N N 55  
C   N4     N N N 56  
C   C5     C N N 57  
C   C6     C N N 58  
C   HOP3   H N N 59  
C   HOP2   H N N 60  
C   "H5'"  H N N 61  
C   "H5''" H N N 62  
C   "H4'"  H N N 63  
C   "H3'"  H N N 64  
C   "HO3'" H N N 65  
C   "H2'"  H N N 66  
C   "HO2'" H N N 67  
C   "H1'"  H N N 68  
C   H41    H N N 69  
C   H42    H N N 70  
C   H5     H N N 71  
C   H6     H N N 72  
CIR C      C N N 73  
CIR O      O N N 74  
CIR OXT    O N N 75  
CIR CA     C N S 76  
CIR N      N N N 77  
CIR C3     C N N 78  
CIR C4     C N N 79  
CIR C5     C N N 80  
CIR N6     N N N 81  
CIR C7     C N N 82  
CIR O7     O N N 83  
CIR N8     N N N 84  
CIR HXT    H N N 85  
CIR HA     H N N 86  
CIR H2     H N N 87  
CIR H      H N N 88  
CIR H31    H N N 89  
CIR H32    H N N 90  
CIR H41    H N N 91  
CIR H42    H N N 92  
CIR H51    H N N 93  
CIR H52    H N N 94  
CIR HN6    H N N 95  
CIR HN81   H N N 96  
CIR HN82   H N N 97  
G   OP3    O N N 98  
G   P      P N N 99  
G   OP1    O N N 100 
G   OP2    O N N 101 
G   "O5'"  O N N 102 
G   "C5'"  C N N 103 
G   "C4'"  C N R 104 
G   "O4'"  O N N 105 
G   "C3'"  C N S 106 
G   "O3'"  O N N 107 
G   "C2'"  C N R 108 
G   "O2'"  O N N 109 
G   "C1'"  C N R 110 
G   N9     N Y N 111 
G   C8     C Y N 112 
G   N7     N Y N 113 
G   C5     C Y N 114 
G   C6     C N N 115 
G   O6     O N N 116 
G   N1     N N N 117 
G   C2     C N N 118 
G   N2     N N N 119 
G   N3     N N N 120 
G   C4     C Y N 121 
G   HOP3   H N N 122 
G   HOP2   H N N 123 
G   "H5'"  H N N 124 
G   "H5''" H N N 125 
G   "H4'"  H N N 126 
G   "H3'"  H N N 127 
G   "HO3'" H N N 128 
G   "H2'"  H N N 129 
G   "HO2'" H N N 130 
G   "H1'"  H N N 131 
G   H8     H N N 132 
G   H1     H N N 133 
G   H21    H N N 134 
G   H22    H N N 135 
U   OP3    O N N 136 
U   P      P N N 137 
U   OP1    O N N 138 
U   OP2    O N N 139 
U   "O5'"  O N N 140 
U   "C5'"  C N N 141 
U   "C4'"  C N R 142 
U   "O4'"  O N N 143 
U   "C3'"  C N S 144 
U   "O3'"  O N N 145 
U   "C2'"  C N R 146 
U   "O2'"  O N N 147 
U   "C1'"  C N R 148 
U   N1     N N N 149 
U   C2     C N N 150 
U   O2     O N N 151 
U   N3     N N N 152 
U   C4     C N N 153 
U   O4     O N N 154 
U   C5     C N N 155 
U   C6     C N N 156 
U   HOP3   H N N 157 
U   HOP2   H N N 158 
U   "H5'"  H N N 159 
U   "H5''" H N N 160 
U   "H4'"  H N N 161 
U   "H3'"  H N N 162 
U   "HO3'" H N N 163 
U   "H2'"  H N N 164 
U   "HO2'" H N N 165 
U   "H1'"  H N N 166 
U   H3     H N N 167 
U   H5     H N N 168 
U   H6     H N N 169 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A   OP3   P      sing N N 1   
A   OP3   HOP3   sing N N 2   
A   P     OP1    doub N N 3   
A   P     OP2    sing N N 4   
A   P     "O5'"  sing N N 5   
A   OP2   HOP2   sing N N 6   
A   "O5'" "C5'"  sing N N 7   
A   "C5'" "C4'"  sing N N 8   
A   "C5'" "H5'"  sing N N 9   
A   "C5'" "H5''" sing N N 10  
A   "C4'" "O4'"  sing N N 11  
A   "C4'" "C3'"  sing N N 12  
A   "C4'" "H4'"  sing N N 13  
A   "O4'" "C1'"  sing N N 14  
A   "C3'" "O3'"  sing N N 15  
A   "C3'" "C2'"  sing N N 16  
A   "C3'" "H3'"  sing N N 17  
A   "O3'" "HO3'" sing N N 18  
A   "C2'" "O2'"  sing N N 19  
A   "C2'" "C1'"  sing N N 20  
A   "C2'" "H2'"  sing N N 21  
A   "O2'" "HO2'" sing N N 22  
A   "C1'" N9     sing N N 23  
A   "C1'" "H1'"  sing N N 24  
A   N9    C8     sing Y N 25  
A   N9    C4     sing Y N 26  
A   C8    N7     doub Y N 27  
A   C8    H8     sing N N 28  
A   N7    C5     sing Y N 29  
A   C5    C6     sing Y N 30  
A   C5    C4     doub Y N 31  
A   C6    N6     sing N N 32  
A   C6    N1     doub Y N 33  
A   N6    H61    sing N N 34  
A   N6    H62    sing N N 35  
A   N1    C2     sing Y N 36  
A   C2    N3     doub Y N 37  
A   C2    H2     sing N N 38  
A   N3    C4     sing Y N 39  
C   OP3   P      sing N N 40  
C   OP3   HOP3   sing N N 41  
C   P     OP1    doub N N 42  
C   P     OP2    sing N N 43  
C   P     "O5'"  sing N N 44  
C   OP2   HOP2   sing N N 45  
C   "O5'" "C5'"  sing N N 46  
C   "C5'" "C4'"  sing N N 47  
C   "C5'" "H5'"  sing N N 48  
C   "C5'" "H5''" sing N N 49  
C   "C4'" "O4'"  sing N N 50  
C   "C4'" "C3'"  sing N N 51  
C   "C4'" "H4'"  sing N N 52  
C   "O4'" "C1'"  sing N N 53  
C   "C3'" "O3'"  sing N N 54  
C   "C3'" "C2'"  sing N N 55  
C   "C3'" "H3'"  sing N N 56  
C   "O3'" "HO3'" sing N N 57  
C   "C2'" "O2'"  sing N N 58  
C   "C2'" "C1'"  sing N N 59  
C   "C2'" "H2'"  sing N N 60  
C   "O2'" "HO2'" sing N N 61  
C   "C1'" N1     sing N N 62  
C   "C1'" "H1'"  sing N N 63  
C   N1    C2     sing N N 64  
C   N1    C6     sing N N 65  
C   C2    O2     doub N N 66  
C   C2    N3     sing N N 67  
C   N3    C4     doub N N 68  
C   C4    N4     sing N N 69  
C   C4    C5     sing N N 70  
C   N4    H41    sing N N 71  
C   N4    H42    sing N N 72  
C   C5    C6     doub N N 73  
C   C5    H5     sing N N 74  
C   C6    H6     sing N N 75  
CIR C     O      doub N N 76  
CIR C     OXT    sing N N 77  
CIR C     CA     sing N N 78  
CIR OXT   HXT    sing N N 79  
CIR CA    N      sing N N 80  
CIR CA    C3     sing N N 81  
CIR CA    HA     sing N N 82  
CIR N     H2     sing N N 83  
CIR N     H      sing N N 84  
CIR C3    C4     sing N N 85  
CIR C3    H31    sing N N 86  
CIR C3    H32    sing N N 87  
CIR C4    C5     sing N N 88  
CIR C4    H41    sing N N 89  
CIR C4    H42    sing N N 90  
CIR C5    N6     sing N N 91  
CIR C5    H51    sing N N 92  
CIR C5    H52    sing N N 93  
CIR N6    C7     sing N N 94  
CIR N6    HN6    sing N N 95  
CIR C7    O7     doub N N 96  
CIR C7    N8     sing N N 97  
CIR N8    HN81   sing N N 98  
CIR N8    HN82   sing N N 99  
G   OP3   P      sing N N 100 
G   OP3   HOP3   sing N N 101 
G   P     OP1    doub N N 102 
G   P     OP2    sing N N 103 
G   P     "O5'"  sing N N 104 
G   OP2   HOP2   sing N N 105 
G   "O5'" "C5'"  sing N N 106 
G   "C5'" "C4'"  sing N N 107 
G   "C5'" "H5'"  sing N N 108 
G   "C5'" "H5''" sing N N 109 
G   "C4'" "O4'"  sing N N 110 
G   "C4'" "C3'"  sing N N 111 
G   "C4'" "H4'"  sing N N 112 
G   "O4'" "C1'"  sing N N 113 
G   "C3'" "O3'"  sing N N 114 
G   "C3'" "C2'"  sing N N 115 
G   "C3'" "H3'"  sing N N 116 
G   "O3'" "HO3'" sing N N 117 
G   "C2'" "O2'"  sing N N 118 
G   "C2'" "C1'"  sing N N 119 
G   "C2'" "H2'"  sing N N 120 
G   "O2'" "HO2'" sing N N 121 
G   "C1'" N9     sing N N 122 
G   "C1'" "H1'"  sing N N 123 
G   N9    C8     sing Y N 124 
G   N9    C4     sing Y N 125 
G   C8    N7     doub Y N 126 
G   C8    H8     sing N N 127 
G   N7    C5     sing Y N 128 
G   C5    C6     sing N N 129 
G   C5    C4     doub Y N 130 
G   C6    O6     doub N N 131 
G   C6    N1     sing N N 132 
G   N1    C2     sing N N 133 
G   N1    H1     sing N N 134 
G   C2    N2     sing N N 135 
G   C2    N3     doub N N 136 
G   N2    H21    sing N N 137 
G   N2    H22    sing N N 138 
G   N3    C4     sing N N 139 
U   OP3   P      sing N N 140 
U   OP3   HOP3   sing N N 141 
U   P     OP1    doub N N 142 
U   P     OP2    sing N N 143 
U   P     "O5'"  sing N N 144 
U   OP2   HOP2   sing N N 145 
U   "O5'" "C5'"  sing N N 146 
U   "C5'" "C4'"  sing N N 147 
U   "C5'" "H5'"  sing N N 148 
U   "C5'" "H5''" sing N N 149 
U   "C4'" "O4'"  sing N N 150 
U   "C4'" "C3'"  sing N N 151 
U   "C4'" "H4'"  sing N N 152 
U   "O4'" "C1'"  sing N N 153 
U   "C3'" "O3'"  sing N N 154 
U   "C3'" "C2'"  sing N N 155 
U   "C3'" "H3'"  sing N N 156 
U   "O3'" "HO3'" sing N N 157 
U   "C2'" "O2'"  sing N N 158 
U   "C2'" "C1'"  sing N N 159 
U   "C2'" "H2'"  sing N N 160 
U   "O2'" "HO2'" sing N N 161 
U   "C1'" N1     sing N N 162 
U   "C1'" "H1'"  sing N N 163 
U   N1    C2     sing N N 164 
U   N1    C6     sing N N 165 
U   C2    O2     doub N N 166 
U   C2    N3     sing N N 167 
U   N3    C4     sing N N 168 
U   N3    H3     sing N N 169 
U   C4    O4     doub N N 170 
U   C4    C5     sing N N 171 
U   C5    C6     doub N N 172 
U   C5    H5     sing N N 173 
U   C6    H6     sing N N 174 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1KOD 'double helix'         
1KOD 'bulge loop'           
1KOD 'mismatched base pair' 
1KOD 'triple helix'         
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A A 1  1_555 B U 14 1_555 -0.412 -0.563 -2.167 -2.274  -8.721  7.876    1  A_A5:U40_B  A 5  ? B 40 ? 20 1 
1 A A 3  1_555 B C 13 1_555 -1.172 -0.577 1.051  -9.481  12.823  21.580   2  A_A7:C39_B  A 7  ? B 39 ? ?  1 
1 B G 8  1_555 B G 12 1_555 -0.139 3.948  -1.222 -16.307 30.454  -141.160 3  B_G34:G38_B B 34 ? B 38 ? ?  ? 
1 A G 6  1_555 B C 11 1_555 -0.808 0.211  0.301  26.579  0.032   10.281   4  A_G10:C37_B A 10 ? B 37 ? ?  1 
1 A A 7  1_555 B G 4  1_555 -0.679 -4.191 -0.058 -22.278 49.070  160.737  5  A_A11:G30_B A 11 ? B 30 ? ?  ? 
1 A G 8  1_555 A G 5  1_555 1.457  -4.929 -0.431 47.975  -19.965 108.561  6  A_G12:G9_A  A 12 ? A 9  ? ?  ? 
1 A U 9  1_555 B G 3  1_555 -3.568 0.780  -1.453 -17.695 -41.512 -75.134  7  A_U13:G29_B A 13 ? B 29 ? ?  ? 
1 A G 10 1_555 B C 2  1_555 -0.539 -0.705 -1.499 -16.697 -5.923  -0.559   8  A_G14:C28_B A 14 ? B 28 ? 19 1 
1 A U 11 1_555 B A 1  1_555 -0.643 0.215  -1.293 43.986  3.814   8.745    9  A_U15:A27_B A 15 ? B 27 ? 20 1 
1 B A 7  1_555 B G 9  1_555 -2.798 4.394  1.130  46.568  0.416   -122.402 10 B_A33:G35_B B 33 ? B 35 ? ?  5 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A A 1  1_555 B U 14 1_555 A A 3  1_555 B C 13 1_555 -0.805 -0.611 5.680  -0.365   21.881   39.035   -4.250 1.005  4.726  30.052 
0.501   44.541   1 AA_A5A7:C39U40_BB   A 5  ? B 40 ? A 7  ? B 39 ? 
1 A A 3  1_555 B C 13 1_555 B G 8  1_555 B G 12 1_555 3.616  -0.555 0.380  -113.444 -120.166 -124.474 0.428  1.670  1.299  60.694 
-57.299 -173.147 2 AB_A7G34:G38C39_BB  A 7  ? B 39 ? B 34 ? B 38 ? 
1 B G 8  1_555 B G 12 1_555 A G 6  1_555 B C 11 1_555 1.958  2.584  -3.573 -155.756 -16.907  -129.333 -1.367 1.630  -2.306 8.571  
-78.967 -170.074 3 BA_G34G10:C37G38_BB B 34 ? B 38 ? A 10 ? B 37 ? 
1 A G 6  1_555 B C 11 1_555 A A 7  1_555 B G 4  1_555 4.201  -0.180 4.208  -10.193  -39.981  -43.048  3.160  3.510  3.713  44.321 
-11.299 -58.941  4 AA_G10A11:G30C37_BB A 10 ? B 37 ? A 11 ? B 30 ? 
1 A A 7  1_555 B G 4  1_555 A G 8  1_555 A G 5  1_555 -1.084 -1.651 1.956  4.638    48.808   60.688   -1.984 0.937  0.586  41.883 
-3.980  76.519   5 AA_A11G12:G9G30_AB  A 11 ? B 30 ? A 12 ? A 9  ? 
1 A G 8  1_555 A G 5  1_555 A U 9  1_555 B G 3  1_555 -0.264 -1.125 3.660  -17.726  3.266    124.966  -0.662 -0.016 3.652  1.837  
9.972   125.701  6 AA_G12U13:G29G9_BA  A 12 ? A 9  ? A 13 ? B 29 ? 
1 A U 9  1_555 B G 3  1_555 A G 10 1_555 B C 2  1_555 0.850  0.457  3.687  2.081    5.905    21.812   -1.314 -1.288 3.742  15.206 
-5.360  22.682   7 AA_U13G14:C28G29_BB A 13 ? B 29 ? A 14 ? B 28 ? 
1 A G 10 1_555 B C 2  1_555 A U 11 1_555 B A 1  1_555 -1.076 -1.009 2.560  -22.683  9.960    19.274   -3.530 -1.786 2.043  21.181 
48.238  31.295   8 AA_G14U15:A27C28_BB A 14 ? B 28 ? A 15 ? B 27 ? 
# 
_pdbx_entity_nonpoly.entity_id   3 
_pdbx_entity_nonpoly.name        CITRULLINE 
_pdbx_entity_nonpoly.comp_id     CIR 
#