HEADER TRANSFERASE 20-DEC-01 1KOF TITLE CRYSTAL STRUCTURE OF GLUCONATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCONATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THERMORESISTANT GLUCONOKINASE; COMPND 5 EC: 2.7.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GNTK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJF119EH KEYWDS ALFA/BETA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.KRAFT,G.A.SPRENGER,Y.LINDQVIST REVDAT 5 13-MAR-24 1KOF 1 REMARK LINK REVDAT 4 16-MAY-18 1KOF 1 REMARK REVDAT 3 24-FEB-09 1KOF 1 VERSN REVDAT 2 04-DEC-02 1KOF 1 REMARK REVDAT 1 29-MAY-02 1KOF 0 JRNL AUTH L.KRAFT,G.A.SPRENGER,Y.LINDQVIST JRNL TITL CONFORMATIONAL CHANGES DURING THE CATALYTIC CYCLE OF JRNL TITL 2 GLUCONATE KINASE AS REVEALED BY X-RAY CRYSTALLOGRAPHY. JRNL REF J.MOL.BIOL. V. 318 1057 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12054802 JRNL DOI 10.1016/S0022-2836(02)00215-2 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 10542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4290 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.4510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.09000 REMARK 3 B22 (A**2) : 1.97000 REMARK 3 B33 (A**2) : -5.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.435 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.443 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2812 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3814 ; 2.164 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 4.349 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;18.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2090 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1398 ; 0.299 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 211 ; 0.259 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 90 ; 0.526 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.586 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 0.835 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2738 ; 1.504 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 2.433 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1076 ; 3.775 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.093 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 1000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.20500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 174 REMARK 465 LYS A 175 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 174 REMARK 465 LYS B 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 55 O HOH B 1018 1.87 REMARK 500 O ALA B 123 O HOH B 1009 1.97 REMARK 500 NE2 GLN A 67 O HOH A 1030 2.03 REMARK 500 NH2 ARG A 78 O HOH A 1033 2.04 REMARK 500 OE2 GLU B 27 NE2 GLN B 31 2.04 REMARK 500 OD1 ASP A 59 OH TYR A 94 2.07 REMARK 500 N PHE B 128 O HOH B 1033 2.12 REMARK 500 NH1 ARG B 46 O HOH B 1022 2.17 REMARK 500 O HOH A 1007 O HOH A 1008 2.18 REMARK 500 O GLY A 162 OG SER A 166 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA GLN A 142 O HOH B 1019 2546 0.69 REMARK 500 C GLN A 142 O HOH B 1019 2546 1.34 REMARK 500 N GLN A 142 O HOH B 1019 2546 1.81 REMARK 500 O HOH A 1022 O HOH B 1020 2545 1.81 REMARK 500 N GLU A 143 O HOH B 1019 2546 1.95 REMARK 500 CE LYS A 125 O HOH B 1020 2545 2.06 REMARK 500 CB GLN A 142 O HOH B 1019 2546 2.10 REMARK 500 NZ LYS A 125 O HOH B 1020 2545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 7 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 60 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 38 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 40 CB - CG - OD2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP B 59 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 150 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 155 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 45 -32.06 -32.54 REMARK 500 CYS A 87 118.51 178.25 REMARK 500 ASN A 102 69.09 -101.10 REMARK 500 ASN A 104 40.91 -94.19 REMARK 500 LEU A 110 82.39 -67.05 REMARK 500 GLN A 142 72.64 -118.73 REMARK 500 GLU A 143 115.81 -27.78 REMARK 500 PRO A 144 105.70 -46.30 REMARK 500 ASP A 157 71.95 -67.85 REMARK 500 ASN B 5 88.15 -67.89 REMARK 500 HIS B 6 29.95 -64.73 REMARK 500 VAL B 16 177.60 -51.97 REMARK 500 ARG B 45 -36.74 -37.50 REMARK 500 CYS B 87 107.69 -164.44 REMARK 500 ALA B 89 70.66 22.46 REMARK 500 LEU B 160 -57.15 -21.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 22 OG REMARK 620 2 ACP A 500 O1B 98.3 REMARK 620 3 ACP A 500 O2G 170.7 90.9 REMARK 620 4 HOH A1023 O 78.4 123.3 97.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 22 OG REMARK 620 2 ACP B 501 O2G 118.3 REMARK 620 3 ACP B 501 O1B 85.4 58.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KNQ RELATED DB: PDB REMARK 900 1KNQ CONTAINS THE SAME PROTEIN, SPACE GROUP P212121. REMARK 900 RELATED ID: 1KO1 RELATED DB: PDB REMARK 900 1KO1 CONTAINS THE SAME PROTEIN, SPACE GROUP C2. REMARK 900 RELATED ID: 1KO4 RELATED DB: PDB REMARK 900 1KO4 CONTAINS THE SAME PROTEIN, SPACE GROUP P21212. REMARK 900 RELATED ID: 1KO5 RELATED DB: PDB REMARK 900 1KO5 CONTAINS THE SAME PROTEIN COMPLEXED WITH ATP. REMARK 900 RELATED ID: 1KO8 RELATED DB: PDB REMARK 900 1KO8 CONTAINS THE SAME PROTEIN COMPLEXED WITH GLUCONATE-6-PHOSPHATE. DBREF 1KOF A 1 175 UNP P46859 GNTK_ECOLI 0 174 DBREF 1KOF B 1 175 UNP P46859 GNTK_ECOLI 0 174 SEQRES 1 A 175 MET SER THR THR ASN HIS ASP HIS HIS ILE TYR VAL LEU SEQRES 2 A 175 MET GLY VAL SER GLY SER GLY LYS SER ALA VAL ALA SER SEQRES 3 A 175 GLU VAL ALA HIS GLN LEU HIS ALA ALA PHE LEU ASP GLY SEQRES 4 A 175 ASP PHE LEU HIS PRO ARG ARG ASN ILE GLU LYS MET ALA SEQRES 5 A 175 SER GLY GLU PRO LEU ASN ASP ASP ASP ARG LYS PRO TRP SEQRES 6 A 175 LEU GLN ALA LEU ASN ASP ALA ALA PHE ALA MET GLN ARG SEQRES 7 A 175 THR ASN LYS VAL SER LEU ILE VAL CYS SER ALA LEU LYS SEQRES 8 A 175 LYS HIS TYR ARG ASP LEU LEU ARG GLU GLY ASN PRO ASN SEQRES 9 A 175 LEU SER PHE ILE TYR LEU LYS GLY ASP PHE ASP VAL ILE SEQRES 10 A 175 GLU SER ARG LEU LYS ALA ARG LYS GLY HIS PHE PHE LYS SEQRES 11 A 175 THR GLN MET LEU VAL THR GLN PHE GLU THR LEU GLN GLU SEQRES 12 A 175 PRO GLY ALA ASP GLU THR ASP VAL LEU VAL VAL ASP ILE SEQRES 13 A 175 ASP GLN PRO LEU GLU GLY VAL VAL ALA SER THR ILE GLU SEQRES 14 A 175 VAL ILE LYS LYS GLY LYS SEQRES 1 B 175 MET SER THR THR ASN HIS ASP HIS HIS ILE TYR VAL LEU SEQRES 2 B 175 MET GLY VAL SER GLY SER GLY LYS SER ALA VAL ALA SER SEQRES 3 B 175 GLU VAL ALA HIS GLN LEU HIS ALA ALA PHE LEU ASP GLY SEQRES 4 B 175 ASP PHE LEU HIS PRO ARG ARG ASN ILE GLU LYS MET ALA SEQRES 5 B 175 SER GLY GLU PRO LEU ASN ASP ASP ASP ARG LYS PRO TRP SEQRES 6 B 175 LEU GLN ALA LEU ASN ASP ALA ALA PHE ALA MET GLN ARG SEQRES 7 B 175 THR ASN LYS VAL SER LEU ILE VAL CYS SER ALA LEU LYS SEQRES 8 B 175 LYS HIS TYR ARG ASP LEU LEU ARG GLU GLY ASN PRO ASN SEQRES 9 B 175 LEU SER PHE ILE TYR LEU LYS GLY ASP PHE ASP VAL ILE SEQRES 10 B 175 GLU SER ARG LEU LYS ALA ARG LYS GLY HIS PHE PHE LYS SEQRES 11 B 175 THR GLN MET LEU VAL THR GLN PHE GLU THR LEU GLN GLU SEQRES 12 B 175 PRO GLY ALA ASP GLU THR ASP VAL LEU VAL VAL ASP ILE SEQRES 13 B 175 ASP GLN PRO LEU GLU GLY VAL VAL ALA SER THR ILE GLU SEQRES 14 B 175 VAL ILE LYS LYS GLY LYS HET MG A1001 1 HET ACP A 500 31 HET MG B1002 1 HET ACP B 501 31 HETNAM MG MAGNESIUM ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ACP 2(C11 H18 N5 O12 P3) FORMUL 7 HOH *67(H2 O) HELIX 1 1 GLY A 20 HIS A 33 1 14 HELIX 2 2 ASP A 40 HIS A 43 5 4 HELIX 3 3 PRO A 44 SER A 53 1 10 HELIX 4 4 ARG A 62 GLN A 77 1 16 HELIX 5 5 LYS A 91 GLU A 100 1 10 HELIX 6 6 ASP A 113 ARG A 124 1 12 HELIX 7 7 LYS A 130 LEU A 141 1 12 HELIX 8 8 PRO A 159 LYS A 173 1 15 HELIX 9 9 GLY B 20 HIS B 33 1 14 HELIX 10 10 ASP B 40 HIS B 43 5 4 HELIX 11 11 PRO B 44 SER B 53 1 10 HELIX 12 12 ARG B 62 GLN B 77 1 16 HELIX 13 13 LYS B 91 GLU B 100 1 10 HELIX 14 14 ASP B 113 ALA B 123 1 11 HELIX 15 15 LYS B 130 LEU B 141 1 12 HELIX 16 16 PRO B 159 LYS B 173 1 15 SHEET 1 A 5 ALA A 35 ASP A 38 0 SHEET 2 A 5 VAL A 82 VAL A 86 1 O LEU A 84 N ALA A 35 SHEET 3 A 5 HIS A 9 MET A 14 1 N TYR A 11 O SER A 83 SHEET 4 A 5 LEU A 105 LYS A 111 1 O SER A 106 N VAL A 12 SHEET 5 A 5 VAL A 151 ASP A 155 1 O LEU A 152 N TYR A 109 SHEET 1 B 5 ALA B 35 ASP B 38 0 SHEET 2 B 5 VAL B 82 VAL B 86 1 O LEU B 84 N ALA B 35 SHEET 3 B 5 HIS B 9 MET B 14 1 N TYR B 11 O SER B 83 SHEET 4 B 5 LEU B 105 LYS B 111 1 O LEU B 110 N MET B 14 SHEET 5 B 5 VAL B 151 ASP B 155 1 O VAL B 154 N TYR B 109 LINK OG SER A 22 MG MG A1001 1555 1555 2.79 LINK O1B ACP A 500 MG MG A1001 1555 1555 2.63 LINK O2G ACP A 500 MG MG A1001 1555 1555 2.21 LINK MG MG A1001 O HOH A1023 1555 1555 2.25 LINK OG SER B 22 MG MG B1002 1555 1555 2.16 LINK O2G ACP B 501 MG MG B1002 1555 1555 2.24 LINK O1B ACP B 501 MG MG B1002 1555 1555 2.44 SITE 1 AC1 3 SER A 22 ACP A 500 HOH A1023 SITE 1 AC2 2 SER B 22 ACP B 501 SITE 1 AC3 14 VAL A 16 SER A 17 GLY A 18 SER A 19 SITE 2 AC3 14 GLY A 20 LYS A 21 SER A 22 ALA A 23 SITE 3 AC3 14 ARG A 120 GLN A 158 PRO A 159 LEU A 160 SITE 4 AC3 14 VAL A 163 MG A1001 SITE 1 AC4 13 SER B 17 GLY B 18 GLY B 20 LYS B 21 SITE 2 AC4 13 SER B 22 ALA B 23 ARG B 120 ARG B 124 SITE 3 AC4 13 GLN B 158 PRO B 159 LEU B 160 VAL B 163 SITE 4 AC4 13 MG B1002 CRYST1 42.740 88.410 51.480 90.00 105.76 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023397 0.000000 0.006603 0.00000 SCALE2 0.000000 0.011311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020184 0.00000