HEADER ISOMERASE 20-DEC-01 1KOJ TITLE CRYSTAL STRUCTURE OF RABBIT PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH 5- TITLE 2 PHOSPHO-D-ARABINONOHYDROXAMIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GPI; PHOSPHOGLUCOSE ISOMERASE; PGI; PHOSPHOHEXOSE ISOMERASE; COMPND 5 PHI; COMPND 6 EC: 5.3.1.9 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: SKELETAL MUSCLE; SOURCE 6 CELLULAR_LOCATION: CYTOPLASMIC KEYWDS PROTEIN - INHIBITOR COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.ARSENIEVA,R.HARDRE,L.SALMON,C.J.JEFFERY REVDAT 3 16-AUG-23 1KOJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1KOJ 1 VERSN REVDAT 1 03-MAY-02 1KOJ 0 JRNL AUTH D.ARSENIEVA,R.HARDRE,L.SALMON,C.J.JEFFERY JRNL TITL THE CRYSTAL STRUCTURE OF RABBIT PHOSPHOGLUCOSE ISOMERASE JRNL TITL 2 COMPLEXED WITH 5-PHOSPHO-D-ARABINONOHYDROXAMIC ACID. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 5872 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11983887 JRNL DOI 10.1073/PNAS.052131799 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : CNS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 94416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9418 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 860 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 802 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-00 REMARK 200 TEMPERATURE (KELVIN) : 114 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SYNCHROTRON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32700 REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1DQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 8000, 250MM MAGNESIUM ACETATE, REMARK 280 100 MM SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP REMARK 280 AT 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.92500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 135.92500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.34500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.34500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 135.92500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.34500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.98500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.92500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.34500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.98500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 557 REMARK 465 GLN B 557 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 555 CG CD CE NZ REMARK 470 ILE A 556 CG1 CG2 CD1 REMARK 470 LYS B 555 CG CD CE NZ REMARK 470 ILE B 556 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 83 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 272 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 369 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 552 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 -34.85 -173.82 REMARK 500 HIS A 19 -33.63 -146.18 REMARK 500 SER A 21 -15.61 -155.52 REMARK 500 ASP A 30 32.73 -80.22 REMARK 500 THR A 31 4.16 -158.66 REMARK 500 ASN A 46 -3.97 78.96 REMARK 500 LYS A 56 31.86 -87.08 REMARK 500 ASP A 94 59.68 38.05 REMARK 500 ASN A 107 15.05 58.82 REMARK 500 ASP A 113 36.47 32.95 REMARK 500 ASP A 160 -58.12 -133.73 REMARK 500 SER A 184 -43.08 -140.46 REMARK 500 ALA A 232 -146.56 -154.37 REMARK 500 LYS A 233 175.37 173.63 REMARK 500 ASP A 234 97.83 76.23 REMARK 500 PRO A 235 2.59 -57.53 REMARK 500 ASN A 248 74.06 -108.65 REMARK 500 GLU A 254 6.65 -65.94 REMARK 500 ASN A 261 31.08 -93.31 REMARK 500 SER A 277 -155.93 -98.60 REMARK 500 ASP A 341 118.51 -163.50 REMARK 500 THR A 374 -134.69 -118.97 REMARK 500 ASN A 385 -65.63 -22.57 REMARK 500 ALA A 389 -107.77 -131.13 REMARK 500 GLN A 511 62.87 -155.82 REMARK 500 GLN A 511 62.95 -155.82 REMARK 500 LYS A 518 27.74 -74.52 REMARK 500 GLN A 519 4.20 -160.45 REMARK 500 HIS A 537 -169.92 -107.80 REMARK 500 HIS B 19 -23.69 -144.93 REMARK 500 LEU B 23 101.34 -160.39 REMARK 500 HIS B 47 26.42 -140.08 REMARK 500 LYS B 56 36.82 -85.03 REMARK 500 ASN B 107 17.91 57.89 REMARK 500 ASP B 160 -57.25 -133.97 REMARK 500 SER B 184 -48.32 -138.82 REMARK 500 SER B 209 115.30 -165.44 REMARK 500 PRO B 235 -15.16 -47.81 REMARK 500 PRO B 259 -173.52 -58.67 REMARK 500 GLN B 260 -28.48 73.50 REMARK 500 SER B 277 -160.40 -103.68 REMARK 500 THR B 374 -141.83 -123.04 REMARK 500 ALA B 389 -104.30 -140.79 REMARK 500 GLN B 511 62.71 -162.35 REMARK 500 THR B 535 12.58 -142.81 REMARK 500 ALA B 554 128.35 -24.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAN B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAN A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DQR RELATED DB: PDB REMARK 900 COMPLEX OF RABBIT PHOSPHOGLUCOSE ISOMERASE WITH 6-PHOSPHOGLUCONATE REMARK 900 RELATED ID: 1HOX RELATED DB: PDB REMARK 900 COMPLEX OF RABBIT PHOSPHOGLUCOSE ISOMERASE WITH FRUCTOSE 6-PHOSPHATE REMARK 900 RELATED ID: 1HM5 RELATED DB: PDB REMARK 900 RABBIT PHOSPHOGLUCOSE ISOMERASE REMARK 900 RELATED ID: 1IAT RELATED DB: PDB REMARK 900 HUMAN PHOSPHOGLUCOSE ISOMERASE REMARK 900 RELATED ID: 1G98 RELATED DB: PDB REMARK 900 RABBIT PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH 5-PHOSPHOARABINONATE DBREF 1KOJ A 1 557 UNP Q9N1E2 G6PI_RABIT 1 557 DBREF 1KOJ B 1 557 UNP Q9N1E2 G6PI_RABIT 1 557 SEQADV 1KOJ LYS A 222 UNP Q9N1E2 GLU 222 CONFLICT SEQADV 1KOJ LYS B 222 UNP Q9N1E2 GLU 222 CONFLICT SEQRES 1 A 557 ALA ALA LEU THR ARG ASN PRO GLN PHE GLN LYS LEU GLN SEQRES 2 A 557 GLN TRP HIS ARG GLU HIS GLY SER GLU LEU ASN LEU ARG SEQRES 3 A 557 HIS LEU PHE ASP THR ASP LYS GLU ARG PHE ASN HIS PHE SEQRES 4 A 557 SER LEU THR LEU ASN THR ASN HIS GLY HIS ILE LEU LEU SEQRES 5 A 557 ASP TYR SER LYS ASN LEU VAL THR GLU GLU VAL MET HIS SEQRES 6 A 557 MET LEU LEU ASP LEU ALA LYS SER ARG GLY VAL GLU ALA SEQRES 7 A 557 ALA ARG GLU SER MET PHE ASN GLY GLU LYS ILE ASN SER SEQRES 8 A 557 THR GLU ASP ARG ALA VAL LEU HIS VAL ALA LEU ARG ASN SEQRES 9 A 557 ARG SER ASN THR PRO ILE VAL VAL ASP GLY LYS ASP VAL SEQRES 10 A 557 MET PRO GLU VAL ASN LYS VAL LEU ASP LYS MET LYS ALA SEQRES 11 A 557 PHE CYS GLN ARG VAL ARG SER GLY ASP TRP LYS GLY TYR SEQRES 12 A 557 THR GLY LYS THR ILE THR ASP VAL ILE ASN ILE GLY ILE SEQRES 13 A 557 GLY GLY SER ASP LEU GLY PRO LEU MET VAL THR GLU ALA SEQRES 14 A 557 LEU LYS PRO TYR SER SER GLY GLY PRO ARG VAL TRP PHE SEQRES 15 A 557 VAL SER ASN ILE ASP GLY THR HIS ILE ALA LYS THR LEU SEQRES 16 A 557 ALA CYS LEU ASN PRO GLU SER SER LEU PHE ILE ILE ALA SEQRES 17 A 557 SER LYS THR PHE THR THR GLN GLU THR ILE THR ASN ALA SEQRES 18 A 557 LYS THR ALA LYS ASP TRP PHE LEU LEU SER ALA LYS ASP SEQRES 19 A 557 PRO SER THR VAL ALA LYS HIS PHE VAL ALA LEU SER THR SEQRES 20 A 557 ASN THR ALA LYS VAL LYS GLU PHE GLY ILE ASP PRO GLN SEQRES 21 A 557 ASN MET PHE GLU PHE TRP ASP TRP VAL GLY GLY ARG TYR SEQRES 22 A 557 SER LEU TRP SER ALA ILE GLY LEU SER ILE ALA LEU HIS SEQRES 23 A 557 VAL GLY PHE ASP ASN PHE GLU GLN LEU LEU SER GLY ALA SEQRES 24 A 557 HIS TRP MET ASP GLN HIS PHE ARG THR THR PRO LEU GLU SEQRES 25 A 557 LYS ASN ALA PRO VAL LEU LEU ALA MET LEU GLY ILE TRP SEQRES 26 A 557 TYR ILE ASN CYS PHE GLY CYS GLU THR GLN ALA VAL LEU SEQRES 27 A 557 PRO TYR ASP GLN TYR LEU HIS ARG PHE ALA ALA TYR PHE SEQRES 28 A 557 GLN GLN GLY ASP MET GLU SER ASN GLY LYS TYR ILE THR SEQRES 29 A 557 LYS SER GLY ALA ARG VAL ASP HIS GLN THR GLY PRO ILE SEQRES 30 A 557 VAL TRP GLY GLU PRO GLY THR ASN GLY GLN HIS ALA PHE SEQRES 31 A 557 TYR GLN LEU ILE HIS GLN GLY THR LYS MET ILE PRO CYS SEQRES 32 A 557 ASP PHE LEU ILE PRO VAL GLN THR GLN HIS PRO ILE ARG SEQRES 33 A 557 LYS GLY LEU HIS HIS LYS ILE LEU LEU ALA ASN PHE LEU SEQRES 34 A 557 ALA GLN THR GLU ALA LEU MET LYS GLY LYS SER THR GLU SEQRES 35 A 557 GLU ALA ARG LYS GLU LEU GLN ALA ALA GLY LYS SER PRO SEQRES 36 A 557 GLU ASP LEU MET LYS LEU LEU PRO HIS LYS VAL PHE GLU SEQRES 37 A 557 GLY ASN ARG PRO THR ASN SER ILE VAL PHE THR LYS LEU SEQRES 38 A 557 THR PRO PHE ILE LEU GLY ALA LEU ILE ALA MET TYR GLU SEQRES 39 A 557 HIS LYS ILE PHE VAL GLN GLY VAL VAL TRP ASP ILE ASN SEQRES 40 A 557 SER PHE ASP GLN TRP GLY VAL GLU LEU GLY LYS GLN LEU SEQRES 41 A 557 ALA LYS LYS ILE GLU PRO GLU LEU ASP GLY SER SER PRO SEQRES 42 A 557 VAL THR SER HIS ASP SER SER THR ASN GLY LEU ILE ASN SEQRES 43 A 557 PHE ILE LYS GLN GLN ARG GLU ALA LYS ILE GLN SEQRES 1 B 557 ALA ALA LEU THR ARG ASN PRO GLN PHE GLN LYS LEU GLN SEQRES 2 B 557 GLN TRP HIS ARG GLU HIS GLY SER GLU LEU ASN LEU ARG SEQRES 3 B 557 HIS LEU PHE ASP THR ASP LYS GLU ARG PHE ASN HIS PHE SEQRES 4 B 557 SER LEU THR LEU ASN THR ASN HIS GLY HIS ILE LEU LEU SEQRES 5 B 557 ASP TYR SER LYS ASN LEU VAL THR GLU GLU VAL MET HIS SEQRES 6 B 557 MET LEU LEU ASP LEU ALA LYS SER ARG GLY VAL GLU ALA SEQRES 7 B 557 ALA ARG GLU SER MET PHE ASN GLY GLU LYS ILE ASN SER SEQRES 8 B 557 THR GLU ASP ARG ALA VAL LEU HIS VAL ALA LEU ARG ASN SEQRES 9 B 557 ARG SER ASN THR PRO ILE VAL VAL ASP GLY LYS ASP VAL SEQRES 10 B 557 MET PRO GLU VAL ASN LYS VAL LEU ASP LYS MET LYS ALA SEQRES 11 B 557 PHE CYS GLN ARG VAL ARG SER GLY ASP TRP LYS GLY TYR SEQRES 12 B 557 THR GLY LYS THR ILE THR ASP VAL ILE ASN ILE GLY ILE SEQRES 13 B 557 GLY GLY SER ASP LEU GLY PRO LEU MET VAL THR GLU ALA SEQRES 14 B 557 LEU LYS PRO TYR SER SER GLY GLY PRO ARG VAL TRP PHE SEQRES 15 B 557 VAL SER ASN ILE ASP GLY THR HIS ILE ALA LYS THR LEU SEQRES 16 B 557 ALA CYS LEU ASN PRO GLU SER SER LEU PHE ILE ILE ALA SEQRES 17 B 557 SER LYS THR PHE THR THR GLN GLU THR ILE THR ASN ALA SEQRES 18 B 557 LYS THR ALA LYS ASP TRP PHE LEU LEU SER ALA LYS ASP SEQRES 19 B 557 PRO SER THR VAL ALA LYS HIS PHE VAL ALA LEU SER THR SEQRES 20 B 557 ASN THR ALA LYS VAL LYS GLU PHE GLY ILE ASP PRO GLN SEQRES 21 B 557 ASN MET PHE GLU PHE TRP ASP TRP VAL GLY GLY ARG TYR SEQRES 22 B 557 SER LEU TRP SER ALA ILE GLY LEU SER ILE ALA LEU HIS SEQRES 23 B 557 VAL GLY PHE ASP ASN PHE GLU GLN LEU LEU SER GLY ALA SEQRES 24 B 557 HIS TRP MET ASP GLN HIS PHE ARG THR THR PRO LEU GLU SEQRES 25 B 557 LYS ASN ALA PRO VAL LEU LEU ALA MET LEU GLY ILE TRP SEQRES 26 B 557 TYR ILE ASN CYS PHE GLY CYS GLU THR GLN ALA VAL LEU SEQRES 27 B 557 PRO TYR ASP GLN TYR LEU HIS ARG PHE ALA ALA TYR PHE SEQRES 28 B 557 GLN GLN GLY ASP MET GLU SER ASN GLY LYS TYR ILE THR SEQRES 29 B 557 LYS SER GLY ALA ARG VAL ASP HIS GLN THR GLY PRO ILE SEQRES 30 B 557 VAL TRP GLY GLU PRO GLY THR ASN GLY GLN HIS ALA PHE SEQRES 31 B 557 TYR GLN LEU ILE HIS GLN GLY THR LYS MET ILE PRO CYS SEQRES 32 B 557 ASP PHE LEU ILE PRO VAL GLN THR GLN HIS PRO ILE ARG SEQRES 33 B 557 LYS GLY LEU HIS HIS LYS ILE LEU LEU ALA ASN PHE LEU SEQRES 34 B 557 ALA GLN THR GLU ALA LEU MET LYS GLY LYS SER THR GLU SEQRES 35 B 557 GLU ALA ARG LYS GLU LEU GLN ALA ALA GLY LYS SER PRO SEQRES 36 B 557 GLU ASP LEU MET LYS LEU LEU PRO HIS LYS VAL PHE GLU SEQRES 37 B 557 GLY ASN ARG PRO THR ASN SER ILE VAL PHE THR LYS LEU SEQRES 38 B 557 THR PRO PHE ILE LEU GLY ALA LEU ILE ALA MET TYR GLU SEQRES 39 B 557 HIS LYS ILE PHE VAL GLN GLY VAL VAL TRP ASP ILE ASN SEQRES 40 B 557 SER PHE ASP GLN TRP GLY VAL GLU LEU GLY LYS GLN LEU SEQRES 41 B 557 ALA LYS LYS ILE GLU PRO GLU LEU ASP GLY SER SER PRO SEQRES 42 B 557 VAL THR SER HIS ASP SER SER THR ASN GLY LEU ILE ASN SEQRES 43 B 557 PHE ILE LYS GLN GLN ARG GLU ALA LYS ILE GLN HET PAN A 902 16 HET PAN B 901 16 HETNAM PAN 5-PHOSPHO-D-ARABINOHYDROXAMIC ACID FORMUL 3 PAN 2(C5 H12 N O9 P) FORMUL 5 HOH *802(H2 O) HELIX 1 1 ASN A 6 GLU A 18 1 13 HELIX 2 2 ASN A 24 ASP A 30 1 7 HELIX 3 3 GLU A 34 PHE A 39 1 6 HELIX 4 4 THR A 60 ARG A 74 1 15 HELIX 5 5 GLY A 75 ASN A 85 1 11 HELIX 6 6 ASN A 90 ASP A 94 5 5 HELIX 7 7 LEU A 98 ARG A 103 1 6 HELIX 8 8 VAL A 117 GLY A 138 1 22 HELIX 9 9 ILE A 156 SER A 159 5 4 HELIX 10 10 ASP A 160 LEU A 170 1 11 HELIX 11 11 LYS A 171 SER A 174 5 4 HELIX 12 12 ASP A 187 ALA A 196 1 10 HELIX 13 13 CYS A 197 LEU A 198 5 2 HELIX 14 14 ASN A 199 GLU A 201 5 3 HELIX 15 15 THR A 214 LEU A 230 1 17 HELIX 16 16 SER A 236 LYS A 240 5 5 HELIX 17 17 ASN A 248 GLU A 254 1 7 HELIX 18 18 ASP A 258 GLN A 260 5 3 HELIX 19 19 GLY A 270 SER A 274 5 5 HELIX 20 20 SER A 277 ILE A 279 5 3 HELIX 21 21 GLY A 280 GLY A 288 1 9 HELIX 22 22 GLY A 288 THR A 309 1 22 HELIX 23 23 PRO A 310 LYS A 313 5 4 HELIX 24 24 ASN A 314 CYS A 329 1 16 HELIX 25 25 ASP A 341 HIS A 345 5 5 HELIX 26 26 ARG A 346 GLY A 360 1 15 HELIX 27 27 THR A 384 ALA A 389 5 6 HELIX 28 28 PHE A 390 GLY A 397 1 8 HELIX 29 29 PRO A 414 LYS A 417 5 4 HELIX 30 30 GLY A 418 GLY A 438 1 21 HELIX 31 31 SER A 440 ALA A 451 1 12 HELIX 32 32 SER A 454 LEU A 462 1 9 HELIX 33 33 PRO A 463 VAL A 466 5 4 HELIX 34 34 THR A 482 ASP A 505 1 24 HELIX 35 35 GLN A 511 GLU A 515 5 5 HELIX 36 36 LEU A 516 ALA A 521 1 6 HELIX 37 37 GLU A 525 ASP A 529 5 5 HELIX 38 38 ASP A 538 ARG A 552 1 15 HELIX 39 39 ALA B 1 ASN B 6 1 6 HELIX 40 40 ASN B 6 GLY B 20 1 15 HELIX 41 41 ASN B 24 ASP B 32 1 9 HELIX 42 42 GLU B 34 PHE B 39 1 6 HELIX 43 43 THR B 60 ARG B 74 1 15 HELIX 44 44 GLY B 75 ASN B 85 1 11 HELIX 45 45 LEU B 98 ARG B 103 1 6 HELIX 46 46 VAL B 117 SER B 137 1 21 HELIX 47 47 ILE B 156 SER B 159 5 4 HELIX 48 48 ASP B 160 LEU B 170 1 11 HELIX 49 49 LYS B 171 SER B 174 5 4 HELIX 50 50 ASP B 187 ALA B 196 1 10 HELIX 51 51 CYS B 197 LEU B 198 5 2 HELIX 52 52 ASN B 199 GLU B 201 5 3 HELIX 53 53 THR B 214 LYS B 233 1 20 HELIX 54 54 ASP B 234 LYS B 240 5 7 HELIX 55 55 ASN B 248 GLY B 256 1 9 HELIX 56 56 GLY B 270 SER B 274 5 5 HELIX 57 57 SER B 277 ILE B 279 5 3 HELIX 58 58 GLY B 280 GLY B 288 1 9 HELIX 59 59 GLY B 288 THR B 309 1 22 HELIX 60 60 PRO B 310 LYS B 313 5 4 HELIX 61 61 ASN B 314 CYS B 329 1 16 HELIX 62 62 ASP B 341 HIS B 345 5 5 HELIX 63 63 ARG B 346 GLY B 360 1 15 HELIX 64 64 THR B 384 ALA B 389 5 6 HELIX 65 65 PHE B 390 GLY B 397 1 8 HELIX 66 66 PRO B 414 LYS B 417 5 4 HELIX 67 67 GLY B 418 GLY B 438 1 21 HELIX 68 68 SER B 440 ALA B 451 1 12 HELIX 69 69 SER B 454 LEU B 462 1 9 HELIX 70 70 PRO B 463 VAL B 466 5 4 HELIX 71 71 THR B 482 ASP B 505 1 24 HELIX 72 72 GLN B 511 LYS B 518 1 8 HELIX 73 73 LYS B 523 ASP B 529 1 7 HELIX 74 74 ASP B 538 ALA B 554 1 17 SHEET 1 A 6 SER A 40 ASN A 44 0 SHEET 2 A 6 HIS A 49 ASP A 53 -1 O ILE A 50 N LEU A 43 SHEET 3 A 6 THR A 473 LYS A 480 -1 O VAL A 477 N LEU A 51 SHEET 4 A 6 CYS A 403 GLN A 410 1 N PHE A 405 O ILE A 476 SHEET 5 A 6 THR A 334 PRO A 339 1 N LEU A 338 O ASP A 404 SHEET 6 A 6 ILE A 377 TRP A 379 1 O ILE A 377 N GLN A 335 SHEET 1 B 2 VAL A 111 VAL A 112 0 SHEET 2 B 2 LYS A 115 ASP A 116 -1 O LYS A 115 N VAL A 112 SHEET 1 C 5 ARG A 179 VAL A 183 0 SHEET 2 C 5 ASP A 150 ILE A 154 1 N ASN A 153 O TRP A 181 SHEET 3 C 5 SER A 203 ALA A 208 1 O ILE A 206 N ILE A 154 SHEET 4 C 5 PHE A 242 SER A 246 1 O VAL A 243 N ILE A 207 SHEET 5 C 5 MET A 262 GLU A 264 1 O PHE A 263 N ALA A 244 SHEET 1 D 6 SER B 40 ASN B 44 0 SHEET 2 D 6 HIS B 49 ASP B 53 -1 O LEU B 52 N LEU B 41 SHEET 3 D 6 THR B 473 LYS B 480 -1 O VAL B 477 N LEU B 51 SHEET 4 D 6 CYS B 403 GLN B 410 1 N PHE B 405 O ILE B 476 SHEET 5 D 6 THR B 334 PRO B 339 1 N LEU B 338 O ASP B 404 SHEET 6 D 6 ILE B 377 TRP B 379 1 O ILE B 377 N GLN B 335 SHEET 1 E 2 VAL B 111 VAL B 112 0 SHEET 2 E 2 LYS B 115 ASP B 116 -1 O LYS B 115 N VAL B 112 SHEET 1 F 5 ARG B 179 VAL B 183 0 SHEET 2 F 5 ASP B 150 ILE B 154 1 N ASN B 153 O TRP B 181 SHEET 3 F 5 SER B 203 ALA B 208 1 O ILE B 206 N ILE B 152 SHEET 4 F 5 PHE B 242 SER B 246 1 O VAL B 243 N ILE B 207 SHEET 5 F 5 MET B 262 GLU B 264 1 O PHE B 263 N ALA B 244 CISPEP 1 GLY A 383 THR A 384 0 11.42 CISPEP 2 GLY B 383 THR B 384 0 10.94 SITE 1 AC1 19 HIS A 388 ILE B 156 GLY B 157 GLY B 158 SITE 2 AC1 19 SER B 159 SER B 209 LYS B 210 THR B 211 SITE 3 AC1 19 THR B 214 GLY B 271 ARG B 272 GLN B 353 SITE 4 AC1 19 GLU B 357 LYS B 518 HOH B 948 HOH B1015 SITE 5 AC1 19 HOH B1094 HOH B1130 HOH B1159 SITE 1 AC2 18 ILE A 156 GLY A 157 GLY A 158 SER A 159 SITE 2 AC2 18 SER A 209 LYS A 210 THR A 211 THR A 214 SITE 3 AC2 18 GLY A 271 ARG A 272 GLN A 353 GLU A 357 SITE 4 AC2 18 LYS A 518 HOH A1011 HOH A1012 HOH A1082 SITE 5 AC2 18 HOH A1225 HIS B 388 CRYST1 82.690 115.970 271.850 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003678 0.00000