HEADER METAL BINDING PROTEIN 08-JAN-02 1KQV TITLE FAMILY OF NMR SOLUTION STRUCTURES OF CA LN CALBINDIN D9K COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D-DEPENDENT CALCIUM-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CABP, CALBINDIN D9K; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALCIUM BINDING PROTEINS, NMR SOLUTION STRUCTURE, PARAMAGNETISM-BASED KEYWDS 2 CONSTRAINTS, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR I.BERTINI,A.DONAIRE,B.JIMENEZ,C.LUCHINAT,G.PARIGI,M.PICCIOLI,L.POGGI REVDAT 4 22-MAY-24 1KQV 1 REMARK REVDAT 3 27-OCT-21 1KQV 1 REMARK SEQADV REVDAT 2 24-FEB-09 1KQV 1 VERSN REVDAT 1 16-JAN-02 1KQV 0 JRNL AUTH I.BERTINI,A.DONAIRE,B.JIMENEZ,C.LUCHINAT,G.PARIGI, JRNL AUTH 2 M.PICCIOLI,L.POGGI JRNL TITL PARAMAGNETISM-BASED VERSUS CLASSICAL CONSTRAINTS: AN JRNL TITL 2 ANALYSIS OF THE SOLUTION STRUCTURE OF CA LN CALBINDIN D9K. JRNL REF J.BIOMOL.NMR V. 21 85 2001 JRNL REFN ISSN 0925-2738 JRNL PMID 11727989 JRNL DOI 10.1023/A:1012422402545 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PSEUDYANA 3.1, PSEUDYANA 3.1 REMARK 3 AUTHORS : BANCI, L., BERTINI, I., CREMONINI, M.A., GORI REMARK 3 SAVELLINI, G., LUCHINAT, C., WUTHRICH, K. AND REMARK 3 GUNTERT, P. (PSEUDYANA), BANCI, L., BERTINI, I., REMARK 3 CREMONINI, M.A., GORI SAVELLINI, G., LUCHINAT, C., REMARK 3 WUTHRICH, K. AND GUNTERT, P. (PSEUDYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KQV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015246. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 283 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : WATER SOLUTION; WATER SOLUTION REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2.0 MM CA LN CB REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; REMARK 210 HNCA; HNCO; HNHB; IR-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ; 700 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCURE WAS DETERMINED USING BOTH STANDARD AND REMARK 210 TAILORED NMR EXPERIMENTS IN ORDER TO DETECT PARAMAGNETIC SIGNALS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 MET A -3 REMARK 465 SER A -2 REMARK 465 ALA A -1 REMARK 465 LYS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 46 H PHE A 50 1.53 REMARK 500 O SER A 24 H LEU A 28 1.56 REMARK 500 O GLU A 48 H GLU A 52 1.59 REMARK 500 O LEU A 28 H LEU A 32 1.59 REMARK 500 OD2 ASP A 58 LA LA A 105 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 176.32 -59.96 REMARK 500 1 ASP A 58 -57.11 -134.46 REMARK 500 1 VAL A 61 52.46 -102.23 REMARK 500 1 SER A 62 165.55 -43.26 REMARK 500 2 PHE A 36 89.77 -151.46 REMARK 500 3 SER A 2 175.15 -59.92 REMARK 500 3 PHE A 36 88.75 -151.17 REMARK 500 4 PHE A 36 89.38 -151.55 REMARK 500 4 ASP A 58 -54.55 -131.35 REMARK 500 4 VAL A 61 51.12 -101.77 REMARK 500 4 SER A 62 164.41 -46.04 REMARK 500 5 SER A 2 174.77 -59.90 REMARK 500 5 ASP A 58 -68.82 -142.37 REMARK 500 5 SER A 62 172.06 -46.35 REMARK 500 6 PHE A 36 89.27 -151.57 REMARK 500 6 LYS A 55 -42.40 -168.46 REMARK 500 6 ASP A 58 -52.58 -137.40 REMARK 500 6 VAL A 61 52.40 -97.07 REMARK 500 6 SER A 62 165.88 -47.08 REMARK 500 7 SER A 2 173.97 -59.86 REMARK 500 7 PHE A 36 89.20 -151.80 REMARK 500 7 ASP A 58 -55.82 -131.56 REMARK 500 7 VAL A 61 58.79 -103.83 REMARK 500 8 ASP A 58 -58.63 -134.50 REMARK 500 8 VAL A 61 57.78 -97.38 REMARK 500 8 SER A 62 166.34 -48.79 REMARK 500 9 SER A 2 175.18 -59.98 REMARK 500 9 PHE A 36 88.98 -151.47 REMARK 500 9 ASP A 58 -56.42 -129.60 REMARK 500 9 VAL A 61 62.58 -102.98 REMARK 500 9 SER A 62 179.81 -49.25 REMARK 500 10 PHE A 36 88.78 -151.27 REMARK 500 10 ASP A 58 -48.53 -133.36 REMARK 500 10 VAL A 61 59.21 -100.47 REMARK 500 10 SER A 62 173.02 -48.77 REMARK 500 11 PHE A 36 89.02 -151.45 REMARK 500 11 THR A 45 170.08 -59.94 REMARK 500 11 ASP A 54 74.02 -68.17 REMARK 500 12 PHE A 36 89.09 -151.65 REMARK 500 12 ASP A 58 -51.73 -134.91 REMARK 500 13 LYS A 41 57.60 -94.56 REMARK 500 13 LYS A 55 -37.36 -178.36 REMARK 500 13 ASP A 58 -51.52 -135.68 REMARK 500 13 VAL A 61 53.32 -98.51 REMARK 500 13 SER A 62 164.86 -46.19 REMARK 500 14 PHE A 36 89.13 -151.55 REMARK 500 14 THR A 45 170.08 -59.90 REMARK 500 14 ASP A 54 68.83 -69.84 REMARK 500 14 ASP A 58 -52.62 -124.56 REMARK 500 14 VAL A 61 48.37 -100.86 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA A 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K31 RELATED DB: PDB REMARK 900 1K31 IS THE AVERAGE NMR SOLUTION STRUCTURE OF CA LN CALBINDIN D9K DBREF 1KQV A -3 75 UNP P02633 S100G_BOVIN 0 78 SEQADV 1KQV MET A 43 UNP P02633 PRO 46 ENGINEERED MUTATION SEQRES 1 A 79 MET SER ALA LYS LYS SER PRO GLU GLU LEU LYS GLY ILE SEQRES 2 A 79 PHE GLU LYS TYR ALA ALA LYS GLU GLY ASP PRO ASN GLN SEQRES 3 A 79 LEU SER LYS GLU GLU LEU LYS LEU LEU LEU GLN THR GLU SEQRES 4 A 79 PHE PRO SER LEU LEU LYS GLY MET SER THR LEU ASP GLU SEQRES 5 A 79 LEU PHE GLU GLU LEU ASP LYS ASN GLY ASP GLY GLU VAL SEQRES 6 A 79 SER PHE GLU GLU PHE GLN VAL LEU VAL LYS LYS ILE SER SEQRES 7 A 79 GLN HET LA A 105 1 HETNAM LA LANTHANUM (III) ION FORMUL 2 LA LA 3+ HELIX 1 1 SER A 2 ALA A 15 1 14 HELIX 2 2 SER A 24 GLU A 35 1 12 HELIX 3 3 PRO A 37 GLY A 42 1 6 HELIX 4 4 THR A 45 ASP A 54 1 10 HELIX 5 5 SER A 62 ILE A 73 1 12 SITE 1 AC1 5 ASP A 54 ASN A 56 ASP A 58 GLU A 60 SITE 2 AC1 5 GLU A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1