data_1KR4 # _entry.id 1KR4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1KR4 RCSB RCSB015255 WWPDB D_1000015255 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC012 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KR4 _pdbx_database_status.recvd_initial_deposition_date 2002-01-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Savchenko, A.' 1 'Zhang, R.' 2 'Joachimiak, A.' 3 'Edwards, A.' 4 'Akarina, T.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'X-ray crystal structure of CutA from Thermotoga maritima at 1.4 A resolution.' _citation.journal_abbrev Proteins _citation.journal_volume 54 _citation.page_first 162 _citation.page_last 165 _citation.year 2004 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14705033 _citation.pdbx_database_id_DOI 10.1002/prot.10585 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Savchenko, A.' 1 primary 'Skarina, T.' 2 primary 'Evdokimova, E.' 3 primary 'Watson, J.D.' 4 primary 'Laskowski, R.' 5 primary 'Arrowsmith, C.H.' 6 primary 'Edwards, A.M.' 7 primary 'Joachimiak, A.' 8 primary 'Zhang, R.G.' 9 # _cell.entry_id 1KR4 _cell.length_a 52.237 _cell.length_b 52.237 _cell.length_c 33.846 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1KR4 _symmetry.space_group_name_H-M 'P 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein TM1056, cutA' 15021.697 1 ? ? ? ? 2 water nat water 18.015 125 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGREALYF(MSE)GH(MSE)ILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGEIVQDKE WAAIFKTTEEKEKELYEELRKLHPYETPAIFTLKVENILTEY(MSE)NWLRESVLGS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGREALYFMGHMILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGEIVQDKEWAAIFKTT EEKEKELYEELRKLHPYETPAIFTLKVENILTEYMNWLRESVLGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC012 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 ARG n 1 15 GLU n 1 16 ALA n 1 17 LEU n 1 18 TYR n 1 19 PHE n 1 20 MSE n 1 21 GLY n 1 22 HIS n 1 23 MSE n 1 24 ILE n 1 25 LEU n 1 26 VAL n 1 27 TYR n 1 28 SER n 1 29 THR n 1 30 PHE n 1 31 PRO n 1 32 ASN n 1 33 GLU n 1 34 GLU n 1 35 LYS n 1 36 ALA n 1 37 LEU n 1 38 GLU n 1 39 ILE n 1 40 GLY n 1 41 ARG n 1 42 LYS n 1 43 LEU n 1 44 LEU n 1 45 GLU n 1 46 LYS n 1 47 ARG n 1 48 LEU n 1 49 ILE n 1 50 ALA n 1 51 CYS n 1 52 PHE n 1 53 ASN n 1 54 ALA n 1 55 PHE n 1 56 GLU n 1 57 ILE n 1 58 ARG n 1 59 SER n 1 60 GLY n 1 61 TYR n 1 62 TRP n 1 63 TRP n 1 64 LYS n 1 65 GLY n 1 66 GLU n 1 67 ILE n 1 68 VAL n 1 69 GLN n 1 70 ASP n 1 71 LYS n 1 72 GLU n 1 73 TRP n 1 74 ALA n 1 75 ALA n 1 76 ILE n 1 77 PHE n 1 78 LYS n 1 79 THR n 1 80 THR n 1 81 GLU n 1 82 GLU n 1 83 LYS n 1 84 GLU n 1 85 LYS n 1 86 GLU n 1 87 LEU n 1 88 TYR n 1 89 GLU n 1 90 GLU n 1 91 LEU n 1 92 ARG n 1 93 LYS n 1 94 LEU n 1 95 HIS n 1 96 PRO n 1 97 TYR n 1 98 GLU n 1 99 THR n 1 100 PRO n 1 101 ALA n 1 102 ILE n 1 103 PHE n 1 104 THR n 1 105 LEU n 1 106 LYS n 1 107 VAL n 1 108 GLU n 1 109 ASN n 1 110 ILE n 1 111 LEU n 1 112 THR n 1 113 GLU n 1 114 TYR n 1 115 MSE n 1 116 ASN n 1 117 TRP n 1 118 LEU n 1 119 ARG n 1 120 GLU n 1 121 SER n 1 122 VAL n 1 123 LEU n 1 124 GLY n 1 125 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified peT15b' _entity_src_gen.plasmid_details 'Protein was expressed as fusion with N-terminal tag MGSSHHHHHHSSGRENLYFQGHM and C-terminal fusion of GS' _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CUTA_THEMA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGEIVQDKEWAAIFKTTEEKEKELYEELRKLHPYETPAI FTLKVENVLTEYMNWLRESVL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession Q9X0E6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KR4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 123 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X0E6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 101 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 7 _struct_ref_seq.pdbx_auth_seq_align_end 107 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1KR4 MET A 1 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -15 1 1 1KR4 GLY A 2 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -14 2 1 1KR4 SER A 3 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -13 3 1 1KR4 SER A 4 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -12 4 1 1KR4 HIS A 5 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -11 5 1 1KR4 HIS A 6 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -10 6 1 1KR4 HIS A 7 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -9 7 1 1KR4 HIS A 8 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -8 8 1 1KR4 HIS A 9 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -7 9 1 1KR4 HIS A 10 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -6 10 1 1KR4 SER A 11 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -5 11 1 1KR4 SER A 12 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -4 12 1 1KR4 GLY A 13 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -3 13 1 1KR4 ARG A 14 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -2 14 1 1KR4 GLU A 15 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' -1 15 1 1KR4 ALA A 16 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' 0 16 1 1KR4 LEU A 17 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' 1 17 1 1KR4 TYR A 18 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' 2 18 1 1KR4 PHE A 19 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' 3 19 1 1KR4 MSE A 20 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' 4 20 1 1KR4 GLY A 21 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' 5 21 1 1KR4 HIS A 22 ? UNP Q9X0E6 ? ? 'EXPRESSION TAG' 6 22 1 1KR4 MSE A 23 ? UNP Q9X0E6 MET 1 'MODIFIED RESIDUE' 7 23 1 1KR4 ILE A 110 ? UNP Q9X0E6 VAL 88 'SEE REMARK 999' 94 24 1 1KR4 MSE A 115 ? UNP Q9X0E6 MET 93 'MODIFIED RESIDUE' 99 25 1 1KR4 GLY A 124 ? UNP Q9X0E6 ? ? 'CLONING ARTIFACT' 108 26 1 1KR4 SER A 125 ? UNP Q9X0E6 ? ? 'CLONING ARTIFACT' 109 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1KR4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 30.70 _exptl_crystal.density_Matthews 1.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-2 _diffrn_detector.pdbx_collection_date 2001-11-20 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9793 1.0 2 0.9791 1.0 3 0.95200 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793,0.9791,0.95200 # _reflns.entry_id 1KR4 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 4.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.4 _reflns.number_obs 19451 _reflns.number_all 20453 _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.25 _reflns.B_iso_Wilson_estimate 12.6 _reflns.pdbx_redundancy 5.49 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.45 _reflns_shell.percent_possible_all 87.7 _reflns_shell.Rmerge_I_obs 0.416 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.66 _reflns_shell.pdbx_redundancy 4.875 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1829 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1KR4 _refine.ls_number_reflns_obs 19451 _refine.ls_number_reflns_all 20453 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 485887.96 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 20.68 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 74.1 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1571 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 15.3 _refine.aniso_B[1][1] -0.67 _refine.aniso_B[2][2] -0.67 _refine.aniso_B[3][3] 1.34 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.389531 _refine.solvent_model_param_bsol 49.9317 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF 485887.96 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1KR4 _refine_analyze.Luzzati_coordinate_error_obs 0.17 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.19 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 930 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 1055 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 20.68 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.66 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.40 _refine_ls_shell.d_res_low 1.49 _refine_ls_shell.number_reflns_R_work 2482 _refine_ls_shell.R_factor_R_work 0.22 _refine_ls_shell.percent_reflns_obs 38.5 _refine_ls_shell.R_factor_R_free 0.232 _refine_ls_shell.R_factor_R_free_error 0.018 _refine_ls_shell.percent_reflns_R_free 5.5 _refine_ls_shell.number_reflns_R_free 145 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1KR4 _struct.title 'Structure Genomics, Protein TM1056, cutA' _struct.pdbx_descriptor ;Protein of TM1056 from Thermotoga maritima, cutA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KR4 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'cutA, structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 32 ? LYS A 46 ? ASN A 16 LYS A 30 1 ? 15 HELX_P HELX_P2 2 LYS A 83 ? HIS A 95 ? LYS A 67 HIS A 79 1 ? 13 HELX_P HELX_P3 3 THR A 112 ? VAL A 122 ? THR A 96 VAL A 106 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PHE 19 C ? ? ? 1_555 A MSE 20 N ? ? A PHE 3 A MSE 4 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 20 C ? ? ? 1_555 A GLY 21 N ? ? A MSE 4 A GLY 5 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A HIS 22 C ? ? ? 1_555 A MSE 23 N ? ? A HIS 6 A MSE 7 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 23 C ? ? ? 1_555 A ILE 24 N ? ? A MSE 7 A ILE 8 1_555 ? ? ? ? ? ? ? 1.325 ? covale5 covale ? ? A TYR 114 C ? ? ? 1_555 A MSE 115 N ? ? A TYR 98 A MSE 99 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale ? ? A MSE 115 C ? ? ? 1_555 A ASN 116 N ? ? A MSE 99 A ASN 100 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 18 ? PHE A 19 ? TYR A 2 PHE A 3 A 2 ILE A 110 ? LEU A 111 ? ILE A 94 LEU A 95 B 1 CYS A 51 ? TRP A 63 ? CYS A 35 TRP A 47 B 2 GLU A 66 ? THR A 80 ? GLU A 50 THR A 64 B 3 MSE A 23 ? PHE A 30 ? MSE A 7 PHE A 14 B 4 ILE A 102 ? LEU A 105 ? ILE A 86 LEU A 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 19 ? N PHE A 3 O ILE A 110 ? O ILE A 94 B 1 2 N PHE A 55 ? N PHE A 39 O ALA A 74 ? O ALA A 58 B 2 3 O PHE A 77 ? O PHE A 61 N VAL A 26 ? N VAL A 10 B 3 4 N TYR A 27 ? N TYR A 11 O PHE A 103 ? O PHE A 87 # _database_PDB_matrix.entry_id 1KR4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KR4 _atom_sites.fract_transf_matrix[1][1] 0.019144 _atom_sites.fract_transf_matrix[1][2] 0.011053 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022105 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029546 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -15 ? ? ? A . n A 1 2 GLY 2 -14 ? ? ? A . n A 1 3 SER 3 -13 ? ? ? A . n A 1 4 SER 4 -12 ? ? ? A . n A 1 5 HIS 5 -11 ? ? ? A . n A 1 6 HIS 6 -10 ? ? ? A . n A 1 7 HIS 7 -9 ? ? ? A . n A 1 8 HIS 8 -8 ? ? ? A . n A 1 9 HIS 9 -7 ? ? ? A . n A 1 10 HIS 10 -6 ? ? ? A . n A 1 11 SER 11 -5 ? ? ? A . n A 1 12 SER 12 -4 ? ? ? A . n A 1 13 GLY 13 -3 ? ? ? A . n A 1 14 ARG 14 -2 ? ? ? A . n A 1 15 GLU 15 -1 ? ? ? A . n A 1 16 ALA 16 0 0 ALA ALA A . n A 1 17 LEU 17 1 1 LEU LEU A . n A 1 18 TYR 18 2 2 TYR TYR A . n A 1 19 PHE 19 3 3 PHE PHE A . n A 1 20 MSE 20 4 4 MSE MSE A . n A 1 21 GLY 21 5 5 GLY GLY A . n A 1 22 HIS 22 6 6 HIS HIS A . n A 1 23 MSE 23 7 7 MSE MSE A . n A 1 24 ILE 24 8 8 ILE ILE A . n A 1 25 LEU 25 9 9 LEU LEU A . n A 1 26 VAL 26 10 10 VAL VAL A . n A 1 27 TYR 27 11 11 TYR TYR A . n A 1 28 SER 28 12 12 SER SER A . n A 1 29 THR 29 13 13 THR THR A . n A 1 30 PHE 30 14 14 PHE PHE A . n A 1 31 PRO 31 15 15 PRO PRO A . n A 1 32 ASN 32 16 16 ASN ASN A . n A 1 33 GLU 33 17 17 GLU GLU A . n A 1 34 GLU 34 18 18 GLU GLU A . n A 1 35 LYS 35 19 19 LYS LYS A . n A 1 36 ALA 36 20 20 ALA ALA A . n A 1 37 LEU 37 21 21 LEU LEU A . n A 1 38 GLU 38 22 22 GLU GLU A . n A 1 39 ILE 39 23 23 ILE ILE A . n A 1 40 GLY 40 24 24 GLY GLY A . n A 1 41 ARG 41 25 25 ARG ARG A . n A 1 42 LYS 42 26 26 LYS LYS A . n A 1 43 LEU 43 27 27 LEU LEU A . n A 1 44 LEU 44 28 28 LEU LEU A . n A 1 45 GLU 45 29 29 GLU GLU A . n A 1 46 LYS 46 30 30 LYS LYS A . n A 1 47 ARG 47 31 31 ARG ARG A . n A 1 48 LEU 48 32 32 LEU LEU A . n A 1 49 ILE 49 33 33 ILE ILE A . n A 1 50 ALA 50 34 34 ALA ALA A . n A 1 51 CYS 51 35 35 CYS CYS A . n A 1 52 PHE 52 36 36 PHE PHE A . n A 1 53 ASN 53 37 37 ASN ASN A . n A 1 54 ALA 54 38 38 ALA ALA A . n A 1 55 PHE 55 39 39 PHE PHE A . n A 1 56 GLU 56 40 40 GLU GLU A . n A 1 57 ILE 57 41 41 ILE ILE A . n A 1 58 ARG 58 42 42 ARG ARG A . n A 1 59 SER 59 43 43 SER SER A . n A 1 60 GLY 60 44 44 GLY GLY A . n A 1 61 TYR 61 45 45 TYR TYR A . n A 1 62 TRP 62 46 46 TRP TRP A . n A 1 63 TRP 63 47 47 TRP TRP A . n A 1 64 LYS 64 48 48 LYS LYS A . n A 1 65 GLY 65 49 49 GLY GLY A . n A 1 66 GLU 66 50 50 GLU GLU A . n A 1 67 ILE 67 51 51 ILE ILE A . n A 1 68 VAL 68 52 52 VAL VAL A . n A 1 69 GLN 69 53 53 GLN GLN A . n A 1 70 ASP 70 54 54 ASP ASP A . n A 1 71 LYS 71 55 55 LYS LYS A . n A 1 72 GLU 72 56 56 GLU GLU A . n A 1 73 TRP 73 57 57 TRP TRP A . n A 1 74 ALA 74 58 58 ALA ALA A . n A 1 75 ALA 75 59 59 ALA ALA A . n A 1 76 ILE 76 60 60 ILE ILE A . n A 1 77 PHE 77 61 61 PHE PHE A . n A 1 78 LYS 78 62 62 LYS LYS A . n A 1 79 THR 79 63 63 THR THR A . n A 1 80 THR 80 64 64 THR THR A . n A 1 81 GLU 81 65 65 GLU GLU A . n A 1 82 GLU 82 66 66 GLU GLU A . n A 1 83 LYS 83 67 67 LYS LYS A . n A 1 84 GLU 84 68 68 GLU GLU A . n A 1 85 LYS 85 69 69 LYS LYS A . n A 1 86 GLU 86 70 70 GLU GLU A . n A 1 87 LEU 87 71 71 LEU LEU A . n A 1 88 TYR 88 72 72 TYR TYR A . n A 1 89 GLU 89 73 73 GLU GLU A . n A 1 90 GLU 90 74 74 GLU GLU A . n A 1 91 LEU 91 75 75 LEU LEU A . n A 1 92 ARG 92 76 76 ARG ARG A . n A 1 93 LYS 93 77 77 LYS LYS A . n A 1 94 LEU 94 78 78 LEU LEU A . n A 1 95 HIS 95 79 79 HIS HIS A . n A 1 96 PRO 96 80 80 PRO PRO A . n A 1 97 TYR 97 81 81 TYR TYR A . n A 1 98 GLU 98 82 82 GLU GLU A . n A 1 99 THR 99 83 83 THR THR A . n A 1 100 PRO 100 84 84 PRO PRO A . n A 1 101 ALA 101 85 85 ALA ALA A . n A 1 102 ILE 102 86 86 ILE ILE A . n A 1 103 PHE 103 87 87 PHE PHE A . n A 1 104 THR 104 88 88 THR THR A . n A 1 105 LEU 105 89 89 LEU LEU A . n A 1 106 LYS 106 90 90 LYS LYS A . n A 1 107 VAL 107 91 91 VAL VAL A . n A 1 108 GLU 108 92 92 GLU GLU A . n A 1 109 ASN 109 93 93 ASN ASN A . n A 1 110 ILE 110 94 94 ILE ILE A . n A 1 111 LEU 111 95 95 LEU LEU A . n A 1 112 THR 112 96 96 THR THR A . n A 1 113 GLU 113 97 97 GLU GLU A . n A 1 114 TYR 114 98 98 TYR TYR A . n A 1 115 MSE 115 99 99 MSE MSE A . n A 1 116 ASN 116 100 100 ASN ASN A . n A 1 117 TRP 117 101 101 TRP TRP A . n A 1 118 LEU 118 102 102 LEU LEU A . n A 1 119 ARG 119 103 103 ARG ARG A . n A 1 120 GLU 120 104 104 GLU GLU A . n A 1 121 SER 121 105 105 SER SER A . n A 1 122 VAL 122 106 106 VAL VAL A . n A 1 123 LEU 123 107 107 LEU LEU A . n A 1 124 GLY 124 108 108 GLY GLY A . n A 1 125 SER 125 109 109 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 200 200 HOH TIP A . B 2 HOH 2 201 201 HOH TIP A . B 2 HOH 3 202 202 HOH TIP A . B 2 HOH 4 203 203 HOH TIP A . B 2 HOH 5 204 204 HOH TIP A . B 2 HOH 6 205 205 HOH TIP A . B 2 HOH 7 206 206 HOH TIP A . B 2 HOH 8 207 207 HOH TIP A . B 2 HOH 9 208 208 HOH TIP A . B 2 HOH 10 209 209 HOH TIP A . B 2 HOH 11 210 210 HOH TIP A . B 2 HOH 12 211 211 HOH TIP A . B 2 HOH 13 212 212 HOH TIP A . B 2 HOH 14 213 213 HOH TIP A . B 2 HOH 15 214 214 HOH TIP A . B 2 HOH 16 215 215 HOH TIP A . B 2 HOH 17 216 216 HOH TIP A . B 2 HOH 18 217 217 HOH TIP A . B 2 HOH 19 218 218 HOH TIP A . B 2 HOH 20 219 219 HOH TIP A . B 2 HOH 21 220 220 HOH TIP A . B 2 HOH 22 221 221 HOH TIP A . B 2 HOH 23 222 222 HOH TIP A . B 2 HOH 24 223 223 HOH TIP A . B 2 HOH 25 224 224 HOH TIP A . B 2 HOH 26 225 225 HOH TIP A . B 2 HOH 27 226 226 HOH TIP A . B 2 HOH 28 227 227 HOH TIP A . B 2 HOH 29 228 228 HOH TIP A . B 2 HOH 30 229 229 HOH TIP A . B 2 HOH 31 230 230 HOH TIP A . B 2 HOH 32 231 231 HOH TIP A . B 2 HOH 33 232 232 HOH TIP A . B 2 HOH 34 233 233 HOH TIP A . B 2 HOH 35 234 234 HOH TIP A . B 2 HOH 36 235 235 HOH TIP A . B 2 HOH 37 236 236 HOH TIP A . B 2 HOH 38 237 237 HOH TIP A . B 2 HOH 39 238 238 HOH TIP A . B 2 HOH 40 239 239 HOH TIP A . B 2 HOH 41 240 240 HOH TIP A . B 2 HOH 42 241 241 HOH TIP A . B 2 HOH 43 242 242 HOH TIP A . B 2 HOH 44 243 243 HOH TIP A . B 2 HOH 45 244 244 HOH TIP A . B 2 HOH 46 245 245 HOH TIP A . B 2 HOH 47 246 246 HOH TIP A . B 2 HOH 48 247 247 HOH TIP A . B 2 HOH 49 248 248 HOH TIP A . B 2 HOH 50 249 249 HOH TIP A . B 2 HOH 51 250 250 HOH TIP A . B 2 HOH 52 251 251 HOH TIP A . B 2 HOH 53 252 252 HOH TIP A . B 2 HOH 54 253 253 HOH TIP A . B 2 HOH 55 254 254 HOH TIP A . B 2 HOH 56 255 255 HOH TIP A . B 2 HOH 57 256 256 HOH TIP A . B 2 HOH 58 257 257 HOH TIP A . B 2 HOH 59 258 258 HOH TIP A . B 2 HOH 60 259 259 HOH TIP A . B 2 HOH 61 260 260 HOH TIP A . B 2 HOH 62 261 261 HOH TIP A . B 2 HOH 63 262 262 HOH TIP A . B 2 HOH 64 263 263 HOH TIP A . B 2 HOH 65 264 264 HOH TIP A . B 2 HOH 66 265 265 HOH TIP A . B 2 HOH 67 266 266 HOH TIP A . B 2 HOH 68 267 267 HOH TIP A . B 2 HOH 69 268 268 HOH TIP A . B 2 HOH 70 269 269 HOH TIP A . B 2 HOH 71 270 270 HOH TIP A . B 2 HOH 72 271 271 HOH TIP A . B 2 HOH 73 272 272 HOH TIP A . B 2 HOH 74 273 273 HOH TIP A . B 2 HOH 75 274 274 HOH TIP A . B 2 HOH 76 275 275 HOH TIP A . B 2 HOH 77 276 276 HOH TIP A . B 2 HOH 78 277 277 HOH TIP A . B 2 HOH 79 278 278 HOH TIP A . B 2 HOH 80 279 279 HOH TIP A . B 2 HOH 81 280 280 HOH TIP A . B 2 HOH 82 281 281 HOH TIP A . B 2 HOH 83 282 282 HOH TIP A . B 2 HOH 84 283 283 HOH TIP A . B 2 HOH 85 284 284 HOH TIP A . B 2 HOH 86 285 285 HOH TIP A . B 2 HOH 87 286 286 HOH TIP A . B 2 HOH 88 287 287 HOH TIP A . B 2 HOH 89 288 288 HOH TIP A . B 2 HOH 90 289 289 HOH TIP A . B 2 HOH 91 290 290 HOH TIP A . B 2 HOH 92 291 291 HOH TIP A . B 2 HOH 93 292 292 HOH TIP A . B 2 HOH 94 293 293 HOH TIP A . B 2 HOH 95 294 294 HOH TIP A . B 2 HOH 96 295 295 HOH TIP A . B 2 HOH 97 296 296 HOH TIP A . B 2 HOH 98 297 297 HOH TIP A . B 2 HOH 99 298 298 HOH TIP A . B 2 HOH 100 299 299 HOH TIP A . B 2 HOH 101 300 300 HOH TIP A . B 2 HOH 102 301 301 HOH TIP A . B 2 HOH 103 302 302 HOH TIP A . B 2 HOH 104 303 303 HOH TIP A . B 2 HOH 105 304 304 HOH TIP A . B 2 HOH 106 305 305 HOH TIP A . B 2 HOH 107 306 306 HOH TIP A . B 2 HOH 108 307 307 HOH TIP A . B 2 HOH 109 308 308 HOH TIP A . B 2 HOH 110 309 309 HOH TIP A . B 2 HOH 111 310 310 HOH TIP A . B 2 HOH 112 311 311 HOH TIP A . B 2 HOH 113 312 312 HOH TIP A . B 2 HOH 114 313 313 HOH TIP A . B 2 HOH 115 314 314 HOH TIP A . B 2 HOH 116 315 315 HOH TIP A . B 2 HOH 117 316 316 HOH TIP A . B 2 HOH 118 317 317 HOH TIP A . B 2 HOH 119 318 318 HOH TIP A . B 2 HOH 120 319 319 HOH TIP A . B 2 HOH 121 320 320 HOH TIP A . B 2 HOH 122 321 321 HOH TIP A . B 2 HOH 123 322 322 HOH TIP A . B 2 HOH 124 323 323 HOH TIP A . B 2 HOH 125 324 324 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 4 ? MET SELENOMETHIONINE 2 A MSE 23 A MSE 7 ? MET SELENOMETHIONINE 3 A MSE 115 A MSE 99 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5000000000 -0.8660254038 0.0000000000 52.2370000000 0.8660254038 -0.5000000000 0.0000000000 90.4771380350 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5000000000 0.8660254038 0.0000000000 -52.2370000000 -0.8660254038 -0.5000000000 0.0000000000 90.4771380350 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-08-14 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal d*TREK 'data scaling' . ? 1 HKL-2000 'data reduction' . ? 2 CNS refinement . ? 3 d*TREK 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 CNS phasing . ? 6 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE The assignement of Ile94 was based on high resolution electron density maps ; # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 276 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 276 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_675 _pdbx_validate_symm_contact.dist 1.83 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 6 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -140.27 _pdbx_validate_torsion.psi 45.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -15 ? A MET 1 2 1 Y 1 A GLY -14 ? A GLY 2 3 1 Y 1 A SER -13 ? A SER 3 4 1 Y 1 A SER -12 ? A SER 4 5 1 Y 1 A HIS -11 ? A HIS 5 6 1 Y 1 A HIS -10 ? A HIS 6 7 1 Y 1 A HIS -9 ? A HIS 7 8 1 Y 1 A HIS -8 ? A HIS 8 9 1 Y 1 A HIS -7 ? A HIS 9 10 1 Y 1 A HIS -6 ? A HIS 10 11 1 Y 1 A SER -5 ? A SER 11 12 1 Y 1 A SER -4 ? A SER 12 13 1 Y 1 A GLY -3 ? A GLY 13 14 1 Y 1 A ARG -2 ? A ARG 14 15 1 Y 1 A GLU -1 ? A GLU 15 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #