data_1KU7 # _entry.id 1KU7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KU7 pdb_00001ku7 10.2210/pdb1ku7/pdb NDB PD0284 ? ? RCSB RCSB015350 ? ? WWPDB D_1000015350 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-03-29 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KU7 _pdbx_database_status.recvd_initial_deposition_date 2002-01-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1KU2 '1KU2 IS THE CRYSTAL STRUCTURE OF THERMUS AQUATICUS RNA POLYMERASE SIGMA SUBUNIT FRAGMENT CONTAINING REGIONS 1.2 TO 3.1.' unspecified PDB 1KU3 '1ku3 is the Crystal Structure of Thermus aquaticus RNA Polymerase Sigma Subunit Fragment, Region 4.' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Campbell, E.A.' 1 'Muzzin, O.' 2 'Chlenov, M.' 3 'Sun, J.L.' 4 'Olson, C.A.' 5 'Weinman, O.' 6 'Trester-Zedlitz, M.L.' 7 'Darst, S.A.' 8 # _citation.id primary _citation.title 'Structure of the bacterial RNA polymerase promoter specificity sigma subunit.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 9 _citation.page_first 527 _citation.page_last 539 _citation.year 2002 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11931761 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(02)00470-7' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Campbell, E.A.' 1 ? primary 'Muzzin, O.' 2 ? primary 'Chlenov, M.' 3 ? primary 'Sun, J.L.' 4 ? primary 'Olson, C.A.' 5 ? primary 'Weinman, O.' 6 ? primary 'Trester-Zedlitz, M.L.' 7 ? primary 'Darst, S.A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*TP*TP*GP*AP*CP*AP*AP*AP*G)-3'" 3342.212 1 ? ? ? '-35 Element DNA' 2 polymer syn "5'-D(*CP*CP*TP*TP*TP*GP*TP*CP*AP*AP*G)-3'" 3324.184 1 ? ? ? ? 3 polymer man 'sigma factor sigA' 8737.127 2 ? L386M 'region 4 (residues 366-438)' ? 4 water nat water 18.015 67 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DT)(DG)(DA)(DC)(DA)(DA)(DA)(DG)' CCTTGACAAAG B ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DT)(DT)(DG)(DT)(DC)(DA)(DA)(DG)' CCTTTGTCAAG C ? 3 'polypeptide(L)' no no SEELEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE SEELEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE A,D ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DA n 1 7 DC n 1 8 DA n 1 9 DA n 1 10 DA n 1 11 DG n 2 1 DC n 2 2 DC n 2 3 DT n 2 4 DT n 2 5 DT n 2 6 DG n 2 7 DT n 2 8 DC n 2 9 DA n 2 10 DA n 2 11 DG n 3 1 SER n 3 2 GLU n 3 3 GLU n 3 4 LEU n 3 5 GLU n 3 6 LYS n 3 7 ALA n 3 8 LEU n 3 9 SER n 3 10 LYS n 3 11 LEU n 3 12 SER n 3 13 GLU n 3 14 ARG n 3 15 GLU n 3 16 ALA n 3 17 MET n 3 18 VAL n 3 19 LEU n 3 20 LYS n 3 21 MET n 3 22 ARG n 3 23 LYS n 3 24 GLY n 3 25 LEU n 3 26 ILE n 3 27 ASP n 3 28 GLY n 3 29 ARG n 3 30 GLU n 3 31 HIS n 3 32 THR n 3 33 LEU n 3 34 GLU n 3 35 GLU n 3 36 VAL n 3 37 GLY n 3 38 ALA n 3 39 TYR n 3 40 PHE n 3 41 GLY n 3 42 VAL n 3 43 THR n 3 44 ARG n 3 45 GLU n 3 46 ARG n 3 47 ILE n 3 48 ARG n 3 49 GLN n 3 50 ILE n 3 51 GLU n 3 52 ASN n 3 53 LYS n 3 54 ALA n 3 55 LEU n 3 56 ARG n 3 57 LYS n 3 58 LEU n 3 59 LYS n 3 60 TYR n 3 61 HIS n 3 62 GLU n 3 63 SER n 3 64 ARG n 3 65 THR n 3 66 ARG n 3 67 LYS n 3 68 LEU n 3 69 ARG n 3 70 ASP n 3 71 PHE n 3 72 LEU n 3 73 GLU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus aquaticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 271 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT B . n A 1 2 DC 2 2 2 DC CYT B . n A 1 3 DT 3 3 3 DT THY B . n A 1 4 DT 4 4 4 DT THY B . n A 1 5 DG 5 5 5 DG GUA B . n A 1 6 DA 6 6 6 DA ADE B . n A 1 7 DC 7 7 7 DC CYT B . n A 1 8 DA 8 8 8 DA ADE B . n A 1 9 DA 9 9 9 DA ADE B . n A 1 10 DA 10 10 10 DA ADE B . n A 1 11 DG 11 11 11 DG GUA B . n B 2 1 DC 1 13 13 DC CYT C . n B 2 2 DC 2 14 14 DC CYT C . n B 2 3 DT 3 15 15 DT THY C . n B 2 4 DT 4 16 16 DT THY C . n B 2 5 DT 5 17 17 DT THY C . n B 2 6 DG 6 18 18 DG GUA C . n B 2 7 DT 7 19 19 DT THY C . n B 2 8 DC 8 20 20 DC CYT C . n B 2 9 DA 9 21 21 DA ADE C . n B 2 10 DA 10 22 22 DA ADE C . n B 2 11 DG 11 23 23 DG GUA C . n C 3 1 SER 1 366 366 SER ALA A . n C 3 2 GLU 2 367 367 GLU GLU A . n C 3 3 GLU 3 368 368 GLU GLU A . n C 3 4 LEU 4 369 369 LEU LEU A . n C 3 5 GLU 5 370 370 GLU GLU A . n C 3 6 LYS 6 371 371 LYS LYS A . n C 3 7 ALA 7 372 372 ALA ALA A . n C 3 8 LEU 8 373 373 LEU LEU A . n C 3 9 SER 9 374 374 SER SER A . n C 3 10 LYS 10 375 375 LYS LYS A . n C 3 11 LEU 11 376 376 LEU LEU A . n C 3 12 SER 12 377 377 SER SER A . n C 3 13 GLU 13 378 378 GLU GLU A . n C 3 14 ARG 14 379 379 ARG ARG A . n C 3 15 GLU 15 380 380 GLU GLU A . n C 3 16 ALA 16 381 381 ALA ALA A . n C 3 17 MET 17 382 382 MET MET A . n C 3 18 VAL 18 383 383 VAL VAL A . n C 3 19 LEU 19 384 384 LEU LEU A . n C 3 20 LYS 20 385 385 LYS LYS A . n C 3 21 MET 21 386 386 MET MET A . n C 3 22 ARG 22 387 387 ARG ARG A . n C 3 23 LYS 23 388 388 LYS LYS A . n C 3 24 GLY 24 389 389 GLY GLY A . n C 3 25 LEU 25 390 390 LEU LEU A . n C 3 26 ILE 26 391 391 ILE ILE A . n C 3 27 ASP 27 392 392 ASP ASP A . n C 3 28 GLY 28 393 393 GLY GLY A . n C 3 29 ARG 29 394 394 ARG ARG A . n C 3 30 GLU 30 395 395 GLU GLU A . n C 3 31 HIS 31 396 396 HIS HIS A . n C 3 32 THR 32 397 397 THR THR A . n C 3 33 LEU 33 398 398 LEU LEU A . n C 3 34 GLU 34 399 399 GLU GLU A . n C 3 35 GLU 35 400 400 GLU GLU A . n C 3 36 VAL 36 401 401 VAL VAL A . n C 3 37 GLY 37 402 402 GLY GLY A . n C 3 38 ALA 38 403 403 ALA ALA A . n C 3 39 TYR 39 404 404 TYR TYR A . n C 3 40 PHE 40 405 405 PHE PHE A . n C 3 41 GLY 41 406 406 GLY GLY A . n C 3 42 VAL 42 407 407 VAL VAL A . n C 3 43 THR 43 408 408 THR THR A . n C 3 44 ARG 44 409 409 ARG ARG A . n C 3 45 GLU 45 410 410 GLU GLU A . n C 3 46 ARG 46 411 411 ARG ARG A . n C 3 47 ILE 47 412 412 ILE ILE A . n C 3 48 ARG 48 413 413 ARG ARG A . n C 3 49 GLN 49 414 414 GLN GLN A . n C 3 50 ILE 50 415 415 ILE ILE A . n C 3 51 GLU 51 416 416 GLU GLU A . n C 3 52 ASN 52 417 417 ASN ASN A . n C 3 53 LYS 53 418 418 LYS LYS A . n C 3 54 ALA 54 419 419 ALA ALA A . n C 3 55 LEU 55 420 420 LEU LEU A . n C 3 56 ARG 56 421 421 ARG ARG A . n C 3 57 LYS 57 422 422 LYS LYS A . n C 3 58 LEU 58 423 423 LEU LEU A . n C 3 59 LYS 59 424 424 LYS LYS A . n C 3 60 TYR 60 425 425 TYR TYR A . n C 3 61 HIS 61 426 426 HIS HIS A . n C 3 62 GLU 62 427 427 GLU GLU A . n C 3 63 SER 63 428 428 SER SER A . n C 3 64 ARG 64 429 429 ARG ARG A . n C 3 65 THR 65 430 430 THR THR A . n C 3 66 ARG 66 431 431 ARG ARG A . n C 3 67 LYS 67 432 432 LYS LYS A . n C 3 68 LEU 68 433 433 LEU LEU A . n C 3 69 ARG 69 434 434 ARG ARG A . n C 3 70 ASP 70 435 435 ASP ASP A . n C 3 71 PHE 71 436 436 PHE PHE A . n C 3 72 LEU 72 437 437 LEU LEU A . n C 3 73 GLU 73 438 438 GLU GLU A . n D 3 1 SER 1 366 ? ? ? D . n D 3 2 GLU 2 367 ? ? ? D . n D 3 3 GLU 3 368 ? ? ? D . n D 3 4 LEU 4 369 ? ? ? D . n D 3 5 GLU 5 370 ? ? ? D . n D 3 6 LYS 6 371 371 LYS ALA D . n D 3 7 ALA 7 372 372 ALA ALA D . n D 3 8 LEU 8 373 373 LEU ALA D . n D 3 9 SER 9 374 374 SER SER D . n D 3 10 LYS 10 375 375 LYS ALA D . n D 3 11 LEU 11 376 376 LEU LEU D . n D 3 12 SER 12 377 377 SER SER D . n D 3 13 GLU 13 378 378 GLU GLU D . n D 3 14 ARG 14 379 379 ARG ARG D . n D 3 15 GLU 15 380 380 GLU GLU D . n D 3 16 ALA 16 381 381 ALA ALA D . n D 3 17 MET 17 382 382 MET MET D . n D 3 18 VAL 18 383 383 VAL VAL D . n D 3 19 LEU 19 384 384 LEU LEU D . n D 3 20 LYS 20 385 385 LYS LYS D . n D 3 21 MET 21 386 386 MET MET D . n D 3 22 ARG 22 387 387 ARG ARG D . n D 3 23 LYS 23 388 388 LYS LYS D . n D 3 24 GLY 24 389 389 GLY GLY D . n D 3 25 LEU 25 390 390 LEU LEU D . n D 3 26 ILE 26 391 391 ILE ILE D . n D 3 27 ASP 27 392 392 ASP ASP D . n D 3 28 GLY 28 393 393 GLY GLY D . n D 3 29 ARG 29 394 394 ARG ARG D . n D 3 30 GLU 30 395 395 GLU GLU D . n D 3 31 HIS 31 396 396 HIS HIS D . n D 3 32 THR 32 397 397 THR THR D . n D 3 33 LEU 33 398 398 LEU LEU D . n D 3 34 GLU 34 399 399 GLU GLU D . n D 3 35 GLU 35 400 400 GLU GLU D . n D 3 36 VAL 36 401 401 VAL VAL D . n D 3 37 GLY 37 402 402 GLY GLY D . n D 3 38 ALA 38 403 403 ALA ALA D . n D 3 39 TYR 39 404 404 TYR TYR D . n D 3 40 PHE 40 405 405 PHE PHE D . n D 3 41 GLY 41 406 406 GLY GLY D . n D 3 42 VAL 42 407 407 VAL VAL D . n D 3 43 THR 43 408 408 THR THR D . n D 3 44 ARG 44 409 409 ARG ARG D . n D 3 45 GLU 45 410 410 GLU GLU D . n D 3 46 ARG 46 411 411 ARG ARG D . n D 3 47 ILE 47 412 412 ILE ILE D . n D 3 48 ARG 48 413 413 ARG ARG D . n D 3 49 GLN 49 414 414 GLN GLN D . n D 3 50 ILE 50 415 415 ILE ILE D . n D 3 51 GLU 51 416 416 GLU GLU D . n D 3 52 ASN 52 417 417 ASN ASN D . n D 3 53 LYS 53 418 418 LYS LYS D . n D 3 54 ALA 54 419 419 ALA ALA D . n D 3 55 LEU 55 420 420 LEU LEU D . n D 3 56 ARG 56 421 421 ARG ARG D . n D 3 57 LYS 57 422 422 LYS LYS D . n D 3 58 LEU 58 423 423 LEU LEU D . n D 3 59 LYS 59 424 424 LYS LYS D . n D 3 60 TYR 60 425 425 TYR ALA D . n D 3 61 HIS 61 426 426 HIS ALA D . n D 3 62 GLU 62 427 427 GLU ALA D . n D 3 63 SER 63 428 428 SER ALA D . n D 3 64 ARG 64 429 429 ARG ARG D . n D 3 65 THR 65 430 430 THR ALA D . n D 3 66 ARG 66 431 431 ARG ARG D . n D 3 67 LYS 67 432 432 LYS LYS D . n D 3 68 LEU 68 433 433 LEU LEU D . n D 3 69 ARG 69 434 434 ARG ALA D . n D 3 70 ASP 70 435 435 ASP ALA D . n D 3 71 PHE 71 436 436 PHE PHE D . n D 3 72 LEU 72 437 437 LEU ALA D . n D 3 73 GLU 73 438 438 GLU ALA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 504 504 HOH TIP B . E 4 HOH 2 508 508 HOH TIP B . E 4 HOH 3 516 516 HOH TIP B . E 4 HOH 4 519 519 HOH TIP B . E 4 HOH 5 520 520 HOH TIP B . E 4 HOH 6 524 524 HOH TIP B . E 4 HOH 7 534 534 HOH TIP B . E 4 HOH 8 539 539 HOH TIP B . E 4 HOH 9 551 551 HOH TIP B . E 4 HOH 10 553 553 HOH TIP B . E 4 HOH 11 561 561 HOH TIP B . F 4 HOH 1 500 500 HOH TIP C . F 4 HOH 2 506 506 HOH TIP C . F 4 HOH 3 509 509 HOH TIP C . F 4 HOH 4 514 514 HOH TIP C . F 4 HOH 5 518 518 HOH TIP C . F 4 HOH 6 522 522 HOH TIP C . F 4 HOH 7 523 523 HOH TIP C . F 4 HOH 8 529 529 HOH TIP C . F 4 HOH 9 532 532 HOH TIP C . F 4 HOH 10 533 533 HOH TIP C . F 4 HOH 11 542 542 HOH TIP C . F 4 HOH 12 543 543 HOH TIP C . F 4 HOH 13 548 548 HOH TIP C . F 4 HOH 14 549 549 HOH TIP C . F 4 HOH 15 550 550 HOH TIP C . F 4 HOH 16 552 552 HOH TIP C . F 4 HOH 17 554 554 HOH TIP C . F 4 HOH 18 559 559 HOH TIP C . F 4 HOH 19 562 562 HOH TIP C . F 4 HOH 20 566 566 HOH TIP C . G 4 HOH 1 502 502 HOH TIP A . G 4 HOH 2 503 503 HOH TIP A . G 4 HOH 3 505 505 HOH TIP A . G 4 HOH 4 507 507 HOH TIP A . G 4 HOH 5 510 510 HOH TIP A . G 4 HOH 6 511 511 HOH TIP A . G 4 HOH 7 512 512 HOH TIP A . G 4 HOH 8 513 513 HOH TIP A . G 4 HOH 9 515 515 HOH TIP A . G 4 HOH 10 517 517 HOH TIP A . G 4 HOH 11 521 521 HOH TIP A . G 4 HOH 12 525 525 HOH TIP A . G 4 HOH 13 526 526 HOH TIP A . G 4 HOH 14 527 527 HOH TIP A . G 4 HOH 15 528 528 HOH TIP A . G 4 HOH 16 530 530 HOH TIP A . G 4 HOH 17 531 531 HOH TIP A . G 4 HOH 18 535 535 HOH TIP A . G 4 HOH 19 537 537 HOH TIP A . G 4 HOH 20 538 538 HOH TIP A . G 4 HOH 21 541 541 HOH TIP A . G 4 HOH 22 544 544 HOH TIP A . G 4 HOH 23 546 546 HOH TIP A . G 4 HOH 24 556 556 HOH TIP A . G 4 HOH 25 557 557 HOH TIP A . G 4 HOH 26 558 558 HOH TIP A . G 4 HOH 27 560 560 HOH TIP A . G 4 HOH 28 563 563 HOH TIP A . G 4 HOH 29 564 564 HOH TIP A . G 4 HOH 30 565 565 HOH TIP A . H 4 HOH 1 501 501 HOH TIP D . H 4 HOH 2 536 536 HOH TIP D . H 4 HOH 3 540 540 HOH TIP D . H 4 HOH 4 545 545 HOH TIP D . H 4 HOH 5 547 547 HOH TIP D . H 4 HOH 6 555 555 HOH TIP D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 366 ? OG ? C SER 1 OG 2 1 Y 1 D LYS 371 ? CG ? D LYS 6 CG 3 1 Y 1 D LYS 371 ? CD ? D LYS 6 CD 4 1 Y 1 D LYS 371 ? CE ? D LYS 6 CE 5 1 Y 1 D LYS 371 ? NZ ? D LYS 6 NZ 6 1 Y 1 D LEU 373 ? CG ? D LEU 8 CG 7 1 Y 1 D LEU 373 ? CD1 ? D LEU 8 CD1 8 1 Y 1 D LEU 373 ? CD2 ? D LEU 8 CD2 9 1 Y 1 D LYS 375 ? CG ? D LYS 10 CG 10 1 Y 1 D LYS 375 ? CD ? D LYS 10 CD 11 1 Y 1 D LYS 375 ? CE ? D LYS 10 CE 12 1 Y 1 D LYS 375 ? NZ ? D LYS 10 NZ 13 1 Y 1 D TYR 425 ? CG ? D TYR 60 CG 14 1 Y 1 D TYR 425 ? CD1 ? D TYR 60 CD1 15 1 Y 1 D TYR 425 ? CD2 ? D TYR 60 CD2 16 1 Y 1 D TYR 425 ? CE1 ? D TYR 60 CE1 17 1 Y 1 D TYR 425 ? CE2 ? D TYR 60 CE2 18 1 Y 1 D TYR 425 ? CZ ? D TYR 60 CZ 19 1 Y 1 D TYR 425 ? OH ? D TYR 60 OH 20 1 Y 1 D HIS 426 ? CG ? D HIS 61 CG 21 1 Y 1 D HIS 426 ? ND1 ? D HIS 61 ND1 22 1 Y 1 D HIS 426 ? CD2 ? D HIS 61 CD2 23 1 Y 1 D HIS 426 ? CE1 ? D HIS 61 CE1 24 1 Y 1 D HIS 426 ? NE2 ? D HIS 61 NE2 25 1 Y 1 D GLU 427 ? CG ? D GLU 62 CG 26 1 Y 1 D GLU 427 ? CD ? D GLU 62 CD 27 1 Y 1 D GLU 427 ? OE1 ? D GLU 62 OE1 28 1 Y 1 D GLU 427 ? OE2 ? D GLU 62 OE2 29 1 Y 1 D SER 428 ? OG ? D SER 63 OG 30 1 Y 1 D THR 430 ? OG1 ? D THR 65 OG1 31 1 Y 1 D THR 430 ? CG2 ? D THR 65 CG2 32 1 Y 1 D ARG 434 ? CG ? D ARG 69 CG 33 1 Y 1 D ARG 434 ? CD ? D ARG 69 CD 34 1 Y 1 D ARG 434 ? NE ? D ARG 69 NE 35 1 Y 1 D ARG 434 ? CZ ? D ARG 69 CZ 36 1 Y 1 D ARG 434 ? NH1 ? D ARG 69 NH1 37 1 Y 1 D ARG 434 ? NH2 ? D ARG 69 NH2 38 1 Y 1 D ASP 435 ? CG ? D ASP 70 CG 39 1 Y 1 D ASP 435 ? OD1 ? D ASP 70 OD1 40 1 Y 1 D ASP 435 ? OD2 ? D ASP 70 OD2 41 1 Y 1 D LEU 437 ? CG ? D LEU 72 CG 42 1 Y 1 D LEU 437 ? CD1 ? D LEU 72 CD1 43 1 Y 1 D LEU 437 ? CD2 ? D LEU 72 CD2 44 1 Y 1 D GLU 438 ? CG ? D GLU 73 CG 45 1 Y 1 D GLU 438 ? CD ? D GLU 73 CD 46 1 Y 1 D GLU 438 ? OE1 ? D GLU 73 OE1 47 1 Y 1 D GLU 438 ? OE2 ? D GLU 73 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MLPHARE phasing . ? 3 CNS refinement 1.0 ? 4 # _cell.entry_id 1KU7 _cell.length_a 36.180 _cell.length_b 62.650 _cell.length_c 94.810 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KU7 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 1KU7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.15 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details 'MES, PEG 4000, magnesium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MES ? ? ? 1 2 1 'PEG 4000' ? ? ? 1 3 1 'magnesium acetate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-08-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X9A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X9A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 1KU7 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 25 _reflns.d_resolution_high 2.4 _reflns.number_obs 8698 _reflns.number_all 8898 _reflns.percent_possible_obs 97.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 79.7 _reflns_shell.Rmerge_I_obs 0.253 _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1KU7 _refine.ls_number_reflns_obs 8698 _refine.ls_number_reflns_all 8898 _refine.ls_d_res_low 25 _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs 97.8 _refine.ls_R_factor_obs 0.255 _refine.ls_R_factor_all 0.255 _refine.ls_R_factor_R_work 0.255 _refine.ls_R_factor_R_free 0.293 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 484 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_R_Free_selection_details ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1136 _refine_hist.pdbx_number_atoms_nucleic_acid 442 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1645 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .00696 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1KU7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1KU7 _struct.title 'Crystal Structure of Thermus aquatics RNA Polymerase SigmaA Subunit Region 4 Bound to-35 Element DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KU7 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'helix-turn-helix, double-helix, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP Q9EZJ8_THEAQ 3 SEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE 366 Q9EZJ8 ? 2 PDB 1KU7 1 ? ? 1KU7 ? 3 PDB 1KU7 2 ? ? 1KU7 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1KU7 A 1 ? 73 ? Q9EZJ8 366 ? 438 ? 366 438 2 1 1KU7 D 1 ? 73 ? Q9EZJ8 366 ? 438 ? 366 438 3 2 1KU7 B 1 ? 11 ? 1KU7 1 ? 11 ? 1 11 4 3 1KU7 C 1 ? 11 ? 1KU7 13 ? 23 ? 13 23 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1KU7 MET A 21 ? UNP Q9EZJ8 LEU 386 'engineered mutation' 386 1 2 1KU7 MET D 21 ? UNP Q9EZJ8 LEU 386 'engineered mutation' 386 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU C 5 ? LYS C 10 ? GLU A 370 LYS A 375 1 ? 6 HELX_P HELX_P2 2 SER C 12 ? GLY C 24 ? SER A 377 GLY A 389 1 ? 13 HELX_P HELX_P3 3 THR C 32 ? GLY C 41 ? THR A 397 GLY A 406 1 ? 10 HELX_P HELX_P4 4 THR C 43 ? ARG C 66 ? THR A 408 ARG A 431 1 ? 24 HELX_P HELX_P5 5 LEU C 68 ? GLU C 73 ? LEU A 433 GLU A 438 1 ? 6 HELX_P HELX_P6 6 SER D 12 ? LYS D 23 ? SER D 377 LYS D 388 1 ? 12 HELX_P HELX_P7 7 THR D 32 ? GLY D 41 ? THR D 397 GLY D 406 1 ? 10 HELX_P HELX_P8 9 ARG D 66 ? PHE D 71 ? ARG D 431 PHE D 436 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 2 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 2 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 2 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 3 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 3 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 4 C DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 4 C DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 5 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 5 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 5 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 6 C DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 6 C DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 7 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 7 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 7 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 8 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 8 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 9 C DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 9 C DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 10 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 10 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 11 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 11 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 11 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 MET _pdbx_validate_rmsd_bond.auth_seq_id_1 382 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SD _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 MET _pdbx_validate_rmsd_bond.auth_seq_id_2 382 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.973 _pdbx_validate_rmsd_bond.bond_target_value 1.807 _pdbx_validate_rmsd_bond.bond_deviation 0.166 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.026 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 B DC 1 ? ? "C1'" B DC 1 ? ? "C2'" B DC 1 ? ? 100.84 112.60 -11.76 1.90 N 2 1 "O4'" C DG 23 ? ? "C1'" C DG 23 ? ? N9 C DG 23 ? ? 110.48 108.30 2.18 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 392 ? ? -144.06 21.85 2 1 ALA D 372 ? ? 64.22 137.05 3 1 ASP D 392 ? ? -140.99 10.86 4 1 LYS D 424 ? ? -61.54 -74.90 5 1 HIS D 426 ? ? -32.64 83.37 6 1 GLU D 427 ? ? 62.31 -48.28 7 1 LEU D 437 ? ? 171.16 -34.88 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC B 1 ? ? 0.110 'SIDE CHAIN' 2 1 DC B 2 ? ? 0.130 'SIDE CHAIN' 3 1 DC C 13 ? ? 0.073 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D SER 366 ? D SER 1 2 1 Y 1 D GLU 367 ? D GLU 2 3 1 Y 1 D GLU 368 ? D GLU 3 4 1 Y 1 D LEU 369 ? D LEU 4 5 1 Y 1 D GLU 370 ? D GLU 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 SER N N N N 402 SER CA C N S 403 SER C C N N 404 SER O O N N 405 SER CB C N N 406 SER OG O N N 407 SER OXT O N N 408 SER H H N N 409 SER H2 H N N 410 SER HA H N N 411 SER HB2 H N N 412 SER HB3 H N N 413 SER HG H N N 414 SER HXT H N N 415 THR N N N N 416 THR CA C N S 417 THR C C N N 418 THR O O N N 419 THR CB C N R 420 THR OG1 O N N 421 THR CG2 C N N 422 THR OXT O N N 423 THR H H N N 424 THR H2 H N N 425 THR HA H N N 426 THR HB H N N 427 THR HG1 H N N 428 THR HG21 H N N 429 THR HG22 H N N 430 THR HG23 H N N 431 THR HXT H N N 432 TYR N N N N 433 TYR CA C N S 434 TYR C C N N 435 TYR O O N N 436 TYR CB C N N 437 TYR CG C Y N 438 TYR CD1 C Y N 439 TYR CD2 C Y N 440 TYR CE1 C Y N 441 TYR CE2 C Y N 442 TYR CZ C Y N 443 TYR OH O N N 444 TYR OXT O N N 445 TYR H H N N 446 TYR H2 H N N 447 TYR HA H N N 448 TYR HB2 H N N 449 TYR HB3 H N N 450 TYR HD1 H N N 451 TYR HD2 H N N 452 TYR HE1 H N N 453 TYR HE2 H N N 454 TYR HH H N N 455 TYR HXT H N N 456 VAL N N N N 457 VAL CA C N S 458 VAL C C N N 459 VAL O O N N 460 VAL CB C N N 461 VAL CG1 C N N 462 VAL CG2 C N N 463 VAL OXT O N N 464 VAL H H N N 465 VAL H2 H N N 466 VAL HA H N N 467 VAL HB H N N 468 VAL HG11 H N N 469 VAL HG12 H N N 470 VAL HG13 H N N 471 VAL HG21 H N N 472 VAL HG22 H N N 473 VAL HG23 H N N 474 VAL HXT H N N 475 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 SER N CA sing N N 396 SER N H sing N N 397 SER N H2 sing N N 398 SER CA C sing N N 399 SER CA CB sing N N 400 SER CA HA sing N N 401 SER C O doub N N 402 SER C OXT sing N N 403 SER CB OG sing N N 404 SER CB HB2 sing N N 405 SER CB HB3 sing N N 406 SER OG HG sing N N 407 SER OXT HXT sing N N 408 THR N CA sing N N 409 THR N H sing N N 410 THR N H2 sing N N 411 THR CA C sing N N 412 THR CA CB sing N N 413 THR CA HA sing N N 414 THR C O doub N N 415 THR C OXT sing N N 416 THR CB OG1 sing N N 417 THR CB CG2 sing N N 418 THR CB HB sing N N 419 THR OG1 HG1 sing N N 420 THR CG2 HG21 sing N N 421 THR CG2 HG22 sing N N 422 THR CG2 HG23 sing N N 423 THR OXT HXT sing N N 424 TYR N CA sing N N 425 TYR N H sing N N 426 TYR N H2 sing N N 427 TYR CA C sing N N 428 TYR CA CB sing N N 429 TYR CA HA sing N N 430 TYR C O doub N N 431 TYR C OXT sing N N 432 TYR CB CG sing N N 433 TYR CB HB2 sing N N 434 TYR CB HB3 sing N N 435 TYR CG CD1 doub Y N 436 TYR CG CD2 sing Y N 437 TYR CD1 CE1 sing Y N 438 TYR CD1 HD1 sing N N 439 TYR CD2 CE2 doub Y N 440 TYR CD2 HD2 sing N N 441 TYR CE1 CZ doub Y N 442 TYR CE1 HE1 sing N N 443 TYR CE2 CZ sing Y N 444 TYR CE2 HE2 sing N N 445 TYR CZ OH sing N N 446 TYR OH HH sing N N 447 TYR OXT HXT sing N N 448 VAL N CA sing N N 449 VAL N H sing N N 450 VAL N H2 sing N N 451 VAL CA C sing N N 452 VAL CA CB sing N N 453 VAL CA HA sing N N 454 VAL C O doub N N 455 VAL C OXT sing N N 456 VAL CB CG1 sing N N 457 VAL CB CG2 sing N N 458 VAL CB HB sing N N 459 VAL CG1 HG11 sing N N 460 VAL CG1 HG12 sing N N 461 VAL CG1 HG13 sing N N 462 VAL CG2 HG21 sing N N 463 VAL CG2 HG22 sing N N 464 VAL CG2 HG23 sing N N 465 VAL OXT HXT sing N N 466 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1KU7 'double helix' 1KU7 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 11 1_555 0.102 0.052 -0.092 -25.276 2.167 3.989 1 B_DC2:DG23_C B 2 ? C 23 ? 19 1 1 A DT 3 1_555 B DA 10 1_555 -0.190 -0.038 0.040 -11.114 6.242 -2.403 2 B_DT3:DA22_C B 3 ? C 22 ? 20 1 1 A DT 4 1_555 B DA 9 1_555 -0.155 -0.101 0.033 1.438 -8.250 -0.761 3 B_DT4:DA21_C B 4 ? C 21 ? 20 1 1 A DG 5 1_555 B DC 8 1_555 -0.075 -0.108 0.136 8.167 4.028 1.339 4 B_DG5:DC20_C B 5 ? C 20 ? 19 1 1 A DA 6 1_555 B DT 7 1_555 0.029 0.001 -0.051 5.587 -2.577 2.947 5 B_DA6:DT19_C B 6 ? C 19 ? 20 1 1 A DC 7 1_555 B DG 6 1_555 0.076 -0.057 -0.217 4.352 -5.075 0.534 6 B_DC7:DG18_C B 7 ? C 18 ? 19 1 1 A DA 8 1_555 B DT 5 1_555 -0.060 -0.112 -0.169 4.998 -13.609 4.057 7 B_DA8:DT17_C B 8 ? C 17 ? 20 1 1 A DA 9 1_555 B DT 4 1_555 0.059 -0.200 -0.129 4.499 -12.348 6.766 8 B_DA9:DT16_C B 9 ? C 16 ? 20 1 1 A DA 10 1_555 B DT 3 1_555 0.055 -0.079 0.163 8.067 -4.175 3.228 9 B_DA10:DT15_C B 10 ? C 15 ? 20 1 1 A DG 11 1_555 B DC 2 1_555 -0.167 -0.068 -0.205 7.415 -4.735 -0.278 10 B_DG11:DC14_C B 11 ? C 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 11 1_555 A DT 3 1_555 B DA 10 1_555 -1.026 -0.774 3.175 2.376 1.295 25.593 -2.083 2.937 3.026 2.912 -5.345 25.734 1 BB_DC2DT3:DA22DG23_CC B 2 ? C 23 ? B 3 ? C 22 ? 1 A DT 3 1_555 B DA 10 1_555 A DT 4 1_555 B DA 9 1_555 -0.271 -0.688 3.003 0.550 -0.421 32.788 -1.152 0.567 3.007 -0.746 -0.975 32.795 2 BB_DT3DT4:DA21DA22_CC B 3 ? C 22 ? B 4 ? C 21 ? 1 A DT 4 1_555 B DA 9 1_555 A DG 5 1_555 B DC 8 1_555 0.264 0.581 3.253 -0.820 9.639 31.570 -0.649 -0.607 3.277 17.217 1.464 32.982 3 BB_DT4DG5:DC20DA21_CC B 4 ? C 21 ? B 5 ? C 20 ? 1 A DG 5 1_555 B DC 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.191 -0.134 3.428 0.248 8.078 33.989 -1.500 0.358 3.309 13.581 -0.417 34.909 4 BB_DG5DA6:DT19DC20_CC B 5 ? C 20 ? B 6 ? C 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DC 7 1_555 B DG 6 1_555 -0.241 -1.041 3.314 0.002 6.795 29.747 -3.304 0.458 3.007 13.023 -0.004 30.496 5 BB_DA6DC7:DG18DT19_CC B 6 ? C 19 ? B 7 ? C 18 ? 1 A DC 7 1_555 B DG 6 1_555 A DA 8 1_555 B DT 5 1_555 -0.559 0.741 3.416 0.437 7.201 33.324 0.042 1.029 3.488 12.378 -0.752 34.074 6 BB_DC7DA8:DT17DG18_CC B 7 ? C 18 ? B 8 ? C 17 ? 1 A DA 8 1_555 B DT 5 1_555 A DA 9 1_555 B DT 4 1_555 0.139 0.116 3.236 -1.848 7.118 34.712 -0.845 -0.497 3.186 11.767 3.055 35.459 7 BB_DA8DA9:DT16DT17_CC B 8 ? C 17 ? B 9 ? C 16 ? 1 A DA 9 1_555 B DT 4 1_555 A DA 10 1_555 B DT 3 1_555 0.321 0.137 3.137 -2.289 -0.484 34.809 0.298 -0.867 3.108 -0.808 3.820 34.885 8 BB_DA9DA10:DT15DT16_CC B 9 ? C 16 ? B 10 ? C 15 ? 1 A DA 10 1_555 B DT 3 1_555 A DG 11 1_555 B DC 2 1_555 0.484 -0.821 3.493 2.310 -1.377 31.415 -1.234 -0.428 3.551 -2.537 -4.256 31.527 9 BB_DA10DG11:DC14DT15_CC B 10 ? C 15 ? B 11 ? C 14 ? # _atom_sites.entry_id 1KU7 _atom_sites.fract_transf_matrix[1][1] 0.027640 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015962 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010547 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_