HEADER HYDROLASE 26-JAN-02 1KVJ TITLE SOLUTION STRUCTURE OF THE CU(I) BOUND FORM OF THE FIRST HEAVY METAL TITLE 2 BINDING MOTIF OF THE MENKES PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-TRANSPORTING ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-79; COMPND 5 SYNONYM: MENKES DISEASE-ASSOCIATED PROTEIN; COMPND 6 EC: 3.6.3.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS MENKES, CU-BOUND, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.M.DE SILVA,G.VEGLIA,S.J.OPELLA REVDAT 3 23-FEB-22 1KVJ 1 REMARK LINK REVDAT 2 24-FEB-09 1KVJ 1 VERSN REVDAT 1 18-NOV-03 1KVJ 0 JRNL AUTH T.M.DESILVA,G.VEGLIA,S.J.OPELLA JRNL TITL SOLUTION STRUCTURES OF THE REDUCED AND CU(I) BOUND FORMS OF JRNL TITL 2 THE FIRST METAL BINDING SEQUENCE OF ATP7A ASSOCIATED WITH JRNL TITL 3 MENKES DISEASE. JRNL REF PROTEINS V. 61 1038 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 16211579 JRNL DOI 10.1002/PROT.20639 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KVJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015384. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM NA ACETATE BUFFER, 10 MM REMARK 210 DTT, 1 MM EDTA, 0.01% NA AZIDE, REMARK 210 1 MM PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UXNMR, NMRCOMPASS REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 18 HZ3 LYS A 46 1.30 REMARK 500 OE1 GLN A 28 HZ1 LYS A 32 1.37 REMARK 500 OG1 THR A 11 HG1 THR A 49 1.38 REMARK 500 HZ1 LYS A 60 OE1 GLU A 64 1.39 REMARK 500 O LEU A 43 HZ2 LYS A 46 1.40 REMARK 500 OD1 ASP A 53 HZ2 LYS A 55 1.44 REMARK 500 HG SER A 13 O VAL A 74 1.46 REMARK 500 HG1 THR A 61 OE2 GLU A 64 1.49 REMARK 500 HG SER A 42 OE1 GLU A 44 1.50 REMARK 500 O PRO A 3 HG SER A 4 1.52 REMARK 500 O GLY A 6 HZ3 LYS A 55 1.52 REMARK 500 H LYS A 40 O THR A 49 1.57 REMARK 500 O ASN A 8 H TYR A 52 1.58 REMARK 500 H ILE A 12 O ALA A 48 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 40.67 -177.43 REMARK 500 1 THR A 18 49.17 -71.59 REMARK 500 1 ASN A 20 -51.55 -14.97 REMARK 500 1 ASN A 34 -76.75 -163.04 REMARK 500 1 HIS A 38 121.10 -170.83 REMARK 500 1 PRO A 59 8.32 -62.78 REMARK 500 1 ASN A 77 -66.20 -109.93 REMARK 500 2 VAL A 7 158.40 69.08 REMARK 500 2 THR A 18 -27.65 -147.22 REMARK 500 2 ASN A 34 -52.13 -178.86 REMARK 500 2 LYS A 46 59.47 37.15 REMARK 500 2 ASP A 72 92.98 -56.62 REMARK 500 3 CYS A 19 139.33 -170.07 REMARK 500 3 ASN A 20 -45.44 -23.09 REMARK 500 3 ASN A 34 -32.14 -173.46 REMARK 500 3 ILE A 75 -135.56 -156.39 REMARK 500 3 HIS A 76 53.52 -103.70 REMARK 500 4 MET A 5 -61.28 62.79 REMARK 500 4 THR A 18 -48.50 61.51 REMARK 500 4 ASN A 20 -40.97 -29.28 REMARK 500 4 ASN A 34 -53.62 -179.58 REMARK 500 4 HIS A 38 122.88 -170.40 REMARK 500 5 MET A 17 97.49 -28.13 REMARK 500 5 CYS A 19 173.81 178.76 REMARK 500 5 ASN A 20 -36.65 -38.34 REMARK 500 5 ASN A 34 -66.77 -162.22 REMARK 500 5 ASP A 72 107.87 -48.39 REMARK 500 5 VAL A 74 103.72 -168.91 REMARK 500 5 ILE A 75 -137.83 -157.65 REMARK 500 5 HIS A 76 71.14 -104.65 REMARK 500 6 MET A 5 28.32 46.51 REMARK 500 6 VAL A 7 174.99 64.81 REMARK 500 6 THR A 18 -42.84 58.93 REMARK 500 6 CYS A 19 163.49 179.02 REMARK 500 6 ASN A 20 -36.71 -35.13 REMARK 500 6 ASN A 34 -60.38 -175.39 REMARK 500 6 PRO A 54 57.61 -67.63 REMARK 500 6 LYS A 55 -66.25 -135.47 REMARK 500 6 VAL A 74 -134.70 -117.51 REMARK 500 7 SER A 4 -22.49 -141.17 REMARK 500 7 VAL A 7 165.78 67.97 REMARK 500 7 CYS A 19 139.64 -178.99 REMARK 500 7 ASN A 20 -46.12 -23.08 REMARK 500 7 ASN A 34 -68.07 -169.66 REMARK 500 7 SER A 42 -101.04 -108.84 REMARK 500 7 LEU A 43 -92.41 -179.13 REMARK 500 7 PRO A 54 70.31 -64.67 REMARK 500 7 LYS A 55 -45.48 -172.24 REMARK 500 8 SER A 4 29.02 -156.01 REMARK 500 8 MET A 5 107.05 -41.45 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 85 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 19 O REMARK 620 2 CYS A 19 SG 79.0 REMARK 620 3 SER A 21 OG 114.7 89.3 REMARK 620 4 CYS A 22 N 62.4 132.2 82.9 REMARK 620 5 CYS A 22 SG 99.6 145.2 121.5 72.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 85 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KVI RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE REDUCED FORM OF THE FIRST HEAVY METAL REMARK 900 BINDING MOTIF OF THE MENKES PROTEIN DBREF 1KVJ A 1 79 UNP Q04656 ATP7A_HUMAN 1 79 SEQRES 1 A 79 MET ASP PRO SER MET GLY VAL ASN SER VAL THR ILE SER SEQRES 2 A 79 VAL GLU GLY MET THR CYS ASN SER CYS VAL TRP THR ILE SEQRES 3 A 79 GLU GLN GLN ILE GLY LYS VAL ASN GLY VAL HIS HIS ILE SEQRES 4 A 79 LYS VAL SER LEU GLU GLU LYS ASN ALA THR ILE ILE TYR SEQRES 5 A 79 ASP PRO LYS LEU GLN THR PRO LYS THR LEU GLN GLU ALA SEQRES 6 A 79 ILE ASP ASP MET GLY PHE ASP ALA VAL ILE HIS ASN PRO SEQRES 7 A 79 ASP HET CU1 A 85 1 HETNAM CU1 COPPER (I) ION FORMUL 2 CU1 CU 1+ HELIX 1 1 ASN A 20 LYS A 32 1 13 HELIX 2 2 THR A 58 GLY A 70 1 13 SHEET 1 A 4 HIS A 38 SER A 42 0 SHEET 2 A 4 ASN A 47 TYR A 52 -1 O THR A 49 N LYS A 40 SHEET 3 A 4 ASN A 8 GLU A 15 -1 N ASN A 8 O TYR A 52 SHEET 4 A 4 ASP A 72 ILE A 75 -1 O VAL A 74 N SER A 13 LINK O CYS A 19 CU CU1 A 85 1555 1555 2.13 LINK SG CYS A 19 CU CU1 A 85 1555 1555 2.15 LINK OG SER A 21 CU CU1 A 85 1555 1555 1.97 LINK N CYS A 22 CU CU1 A 85 1555 1555 2.71 LINK SG CYS A 22 CU CU1 A 85 1555 1555 2.16 SITE 1 AC1 3 CYS A 19 SER A 21 CYS A 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1