HEADER RNA BINDING PROTEIN 27-JAN-02 1KVN TITLE SOLUTION STRUCTURE OF PROTEIN SRP19 OF THE ARHAEOGLOBUS FULGIDUS TITLE 2 SIGNAL RECOGNITION PARTICLE, 10 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SRP19; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF1258; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-23C(+) KEYWDS RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR O.N.PAKHOMOVA,S.DEEP,Q.HUANG,C.ZWIEB,A.P.HINCK REVDAT 3 27-OCT-21 1KVN 1 REMARK SEQADV REVDAT 2 24-FEB-09 1KVN 1 VERSN REVDAT 1 20-MAR-02 1KVN 0 JRNL AUTH O.N.PAKHOMOVA,S.DEEP,Q.HUANG,C.ZWIEB,A.P.HINCK JRNL TITL SOLUTION STRUCTURE OF PROTEIN SRP19 OF ARCHAEOGLOBUS JRNL TITL 2 FULGIDUS SIGNAL RECOGNITION PARTICLE. JRNL REF J.MOL.BIOL. V. 317 145 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 11916385 JRNL DOI 10.1006/JMBI.2002.5411 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER ANALYTIK GMBH (XWINNMR), BRUNGER, A.T.; REMARK 3 CLORE, G.M., GRONENBORN, A.M., TJUNDRA, N. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 886 RESTRAINTS, 690 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 130 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 66 1H-15N RESIDUAL DIPOLAR COUPLING REMARK 3 RESTRAINTS. REMARK 4 REMARK 4 1KVN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015388. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 310 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 75 MM; 75 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 25 MM KH2PO4, 50MM NACL, 95% REMARK 210 H2O, 5% D2O; 25 MM KH2PO4, 50 MM REMARK 210 NACL, 99.99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; 3D 15N- REMARK 210 SEPARATED NOESY WITH 13C REMARK 210 CHEMICAL SHIFT EVOLUTION IN F2 REMARK 210 DIMENTION; IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX2 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.8, PIPP 4.3.1, X-PLOR REMARK 210 3.851, TALOS 98.040.28.02, PALES REMARK 210 2.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY/SIMULATED REMARK 210 ANNEALING PROTOCOL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 26 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: IPAP-HSQC EXPERIMENT WAS PERFORMED IN A SAMPLE OF THE REMARK 210 PROTEIN IN EITHER AN UNSTRESSED OR MECHANICALLY STRESSED 8% REMARK 210 POLYACRYLAMIDE GEL. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 47 H GLU A 69 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 11 35.64 -96.23 REMARK 500 1 ARG A 22 29.12 -155.28 REMARK 500 1 ASN A 31 69.14 61.58 REMARK 500 1 LEU A 46 113.27 -177.13 REMARK 500 1 LYS A 47 -39.74 172.49 REMARK 500 1 LYS A 57 -167.31 38.53 REMARK 500 1 SER A 58 -163.93 42.52 REMARK 500 1 LYS A 70 -69.09 157.36 REMARK 500 1 ARG A 71 128.45 59.04 REMARK 500 1 LYS A 74 -113.06 -125.67 REMARK 500 1 LYS A 101 -76.07 -117.13 REMARK 500 2 LYS A 2 -154.29 -124.39 REMARK 500 2 ARG A 21 97.68 45.38 REMARK 500 2 ASN A 31 128.94 61.76 REMARK 500 2 LEU A 46 126.96 -175.85 REMARK 500 2 LYS A 47 -43.59 -178.00 REMARK 500 2 LYS A 53 96.61 49.57 REMARK 500 2 LYS A 54 -130.83 -90.81 REMARK 500 2 LYS A 70 56.56 176.02 REMARK 500 2 LYS A 74 -134.15 -112.21 REMARK 500 2 GLN A 95 80.31 20.23 REMARK 500 2 LYS A 96 -74.91 -89.91 REMARK 500 2 LYS A 99 92.19 48.14 REMARK 500 2 LYS A 101 -44.59 -154.27 REMARK 500 3 LYS A 2 -96.04 -155.61 REMARK 500 3 ARG A 22 36.94 -159.82 REMARK 500 3 LEU A 46 128.15 -176.36 REMARK 500 3 LYS A 47 -50.99 -173.96 REMARK 500 3 LYS A 54 168.94 53.71 REMARK 500 3 LYS A 70 60.00 170.03 REMARK 500 3 LYS A 74 -101.16 -123.61 REMARK 500 3 GLN A 95 74.00 44.04 REMARK 500 3 LYS A 97 -87.29 53.77 REMARK 500 3 LYS A 100 -62.90 -148.84 REMARK 500 3 LYS A 101 -63.61 64.45 REMARK 500 4 LYS A 2 -114.00 -145.95 REMARK 500 4 LEU A 11 39.09 -93.36 REMARK 500 4 ARG A 22 34.12 -160.65 REMARK 500 4 ASN A 31 117.70 67.85 REMARK 500 4 LEU A 46 124.93 -175.91 REMARK 500 4 LYS A 47 -44.74 -176.00 REMARK 500 4 LYS A 54 93.11 44.77 REMARK 500 4 TYR A 55 135.23 62.26 REMARK 500 4 TRP A 60 77.82 -167.80 REMARK 500 4 LYS A 70 -44.73 -163.27 REMARK 500 4 ARG A 71 -160.09 47.25 REMARK 500 4 LYS A 74 -72.79 -98.30 REMARK 500 4 GLN A 95 175.27 58.83 REMARK 500 4 LYS A 96 -77.85 -171.19 REMARK 500 5 LYS A 2 -92.86 -160.68 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 17 0.31 SIDE CHAIN REMARK 500 1 ARG A 21 0.30 SIDE CHAIN REMARK 500 1 ARG A 22 0.26 SIDE CHAIN REMARK 500 1 ARG A 25 0.24 SIDE CHAIN REMARK 500 1 ARG A 26 0.28 SIDE CHAIN REMARK 500 1 ARG A 49 0.22 SIDE CHAIN REMARK 500 1 ARG A 65 0.30 SIDE CHAIN REMARK 500 1 ARG A 71 0.31 SIDE CHAIN REMARK 500 1 ARG A 83 0.26 SIDE CHAIN REMARK 500 1 ARG A 89 0.32 SIDE CHAIN REMARK 500 1 ARG A 93 0.30 SIDE CHAIN REMARK 500 2 ARG A 17 0.25 SIDE CHAIN REMARK 500 2 ARG A 21 0.29 SIDE CHAIN REMARK 500 2 ARG A 22 0.25 SIDE CHAIN REMARK 500 2 ARG A 25 0.21 SIDE CHAIN REMARK 500 2 ARG A 26 0.20 SIDE CHAIN REMARK 500 2 ARG A 49 0.32 SIDE CHAIN REMARK 500 2 ARG A 65 0.27 SIDE CHAIN REMARK 500 2 ARG A 71 0.30 SIDE CHAIN REMARK 500 2 ARG A 83 0.31 SIDE CHAIN REMARK 500 2 ARG A 89 0.27 SIDE CHAIN REMARK 500 2 ARG A 93 0.32 SIDE CHAIN REMARK 500 3 ARG A 17 0.30 SIDE CHAIN REMARK 500 3 ARG A 21 0.31 SIDE CHAIN REMARK 500 3 ARG A 22 0.31 SIDE CHAIN REMARK 500 3 ARG A 25 0.24 SIDE CHAIN REMARK 500 3 ARG A 26 0.23 SIDE CHAIN REMARK 500 3 ARG A 49 0.26 SIDE CHAIN REMARK 500 3 ARG A 65 0.31 SIDE CHAIN REMARK 500 3 ARG A 71 0.23 SIDE CHAIN REMARK 500 3 ARG A 83 0.23 SIDE CHAIN REMARK 500 3 ARG A 89 0.21 SIDE CHAIN REMARK 500 3 ARG A 93 0.20 SIDE CHAIN REMARK 500 4 ARG A 17 0.17 SIDE CHAIN REMARK 500 4 ARG A 21 0.17 SIDE CHAIN REMARK 500 4 ARG A 22 0.28 SIDE CHAIN REMARK 500 4 ARG A 25 0.24 SIDE CHAIN REMARK 500 4 ARG A 26 0.26 SIDE CHAIN REMARK 500 4 ARG A 49 0.27 SIDE CHAIN REMARK 500 4 ARG A 65 0.20 SIDE CHAIN REMARK 500 4 ARG A 71 0.22 SIDE CHAIN REMARK 500 4 ARG A 83 0.30 SIDE CHAIN REMARK 500 4 ARG A 89 0.31 SIDE CHAIN REMARK 500 4 ARG A 93 0.31 SIDE CHAIN REMARK 500 5 ARG A 17 0.16 SIDE CHAIN REMARK 500 5 ARG A 21 0.30 SIDE CHAIN REMARK 500 5 ARG A 22 0.29 SIDE CHAIN REMARK 500 5 ARG A 25 0.28 SIDE CHAIN REMARK 500 5 ARG A 26 0.31 SIDE CHAIN REMARK 500 5 ARG A 49 0.29 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 108 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4935 RELATED DB: BMRB REMARK 900 DEPOSITION 4935 CONTAINS ASSIGNMENTS FOR PROTEIN SRP19 OF REMARK 900 ARCHAEOGLOBUS FULGIDUS. REMARK 900 RELATED ID: 1KVV RELATED DB: PDB REMARK 900 1KVV CONTAINS THE COORDINATES FOR THE MINIMIZED AVERAGE STRUCTURE REMARK 900 FOR THE SAME PROTEIN. DBREF 1KVN A 1 104 UNP O29010 SRP19_ARCFU 1 104 SEQADV 1KVN SER A 4 UNP O29010 CYS 4 ENGINEERED MUTATION SEQADV 1KVN SER A 41 UNP O29010 CYS 41 ENGINEERED MUTATION SEQRES 1 A 104 MET LYS GLU SER VAL VAL TRP THR VAL ASN LEU ASP SER SEQRES 2 A 104 LYS LYS SER ARG ALA GLU GLY ARG ARG ILE PRO ARG ARG SEQRES 3 A 104 PHE ALA VAL PRO ASN VAL LYS LEU HIS GLU LEU VAL GLU SEQRES 4 A 104 ALA SER LYS GLU LEU GLY LEU LYS PHE ARG ALA GLU GLU SEQRES 5 A 104 LYS LYS TYR PRO LYS SER TRP TRP GLU GLU GLY GLY ARG SEQRES 6 A 104 VAL VAL VAL GLU LYS ARG GLY THR LYS THR LYS LEU MET SEQRES 7 A 104 ILE GLU LEU ALA ARG LYS ILE ALA GLU ILE ARG GLU GLN SEQRES 8 A 104 LYS ARG GLU GLN LYS LYS ASP LYS LYS LYS LYS LYS LYS HELIX 1 1 PRO A 24 ALA A 28 5 5 HELIX 2 2 LYS A 33 GLY A 45 1 13 HELIX 3 3 LYS A 74 GLN A 95 1 22 HELIX 4 4 LYS A 96 LYS A 101 1 6 SHEET 1 A 3 SER A 4 TRP A 7 0 SHEET 2 A 3 ARG A 65 VAL A 68 -1 O VAL A 66 N VAL A 6 SHEET 3 A 3 PHE A 48 ALA A 50 -1 N ARG A 49 O VAL A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1