HEADER IMMUNE SYSTEM, SUGAR BINDING PROTEIN 30-JAN-02 1KWY TITLE RAT MANNOSE PROTEIN A COMPLEXED WITH MAN-A13-MAN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-BINDING PROTEIN A; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 90-238 OF P19999; COMPND 5 SYNONYM: MBP-A; MANNAN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MBL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LECTIN, C-TYPE LECTIN, CALCIUM-BINDING PROTEIN, IMMUNE SYSTEM, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.K.NG,A.R.KOLATKAR,S.PARK-SNYDER,H.FEINBERG,D.A.CLARK,K.DRICKAMER, AUTHOR 2 W.I.WEIS REVDAT 5 16-OCT-24 1KWY 1 HETSYN REVDAT 4 29-JUL-20 1KWY 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 1KWY 1 VERSN REVDAT 2 01-APR-03 1KWY 1 JRNL REVDAT 1 05-JUL-02 1KWY 0 JRNL AUTH K.K.NG,A.R.KOLATKAR,S.PARK-SNYDER,H.FEINBERG,D.A.CLARK, JRNL AUTH 2 K.DRICKAMER,W.I.WEIS JRNL TITL ORIENTATION OF BOUND LIGANDS IN MANNOSE-BINDING PROTEINS. JRNL TITL 2 IMPLICATIONS FOR MULTIVALENT LIGAND RECOGNITION. JRNL REF J.BIOL.CHEM. V. 277 16088 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11850428 JRNL DOI 10.1074/JBC.M200493200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 41452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4218 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3459 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-13% PEG 8000 OR 3500, 100MM TRIS-CL REMARK 280 PH=8.0, 10MM NACL, 20MM CACL2, 2MM NAN3. PROTEIN SOLUTION: 12MG/ REMARK 280 ML IN 10 MM NACL, 10MM CACL2, 200MM MAN-A13-MAN. VAPOR DIFFUSION, REMARK 280 HANGING DROP AT 298K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.43000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.43000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 611 O HOH B 714 2.15 REMARK 500 ND1 HIS C 99 O HOH C 795 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 152 -22.65 72.88 REMARK 500 THR A 177 -91.05 -116.04 REMARK 500 ASN A 180 47.24 -144.35 REMARK 500 ASP A 188 52.17 39.04 REMARK 500 VAL A 199 -122.98 -118.93 REMARK 500 ASP A 200 -77.79 -57.89 REMARK 500 ASN A 201 42.66 -94.47 REMARK 500 LYS B 152 -44.19 75.81 REMARK 500 THR B 177 -75.11 -103.53 REMARK 500 ASN B 180 49.43 -143.93 REMARK 500 VAL B 199 -134.59 -120.09 REMARK 500 LYS C 152 -15.10 73.25 REMARK 500 THR C 177 -85.74 -88.74 REMARK 500 ASN C 180 49.05 -144.72 REMARK 500 ASP C 200 37.59 -74.09 REMARK 500 ASN C 201 -10.59 -145.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 OE1 REMARK 620 2 GLU A 165 OE1 90.7 REMARK 620 3 ASP A 194 OD2 159.4 74.0 REMARK 620 4 ASP A 194 OD1 148.5 119.9 50.5 REMARK 620 5 HOH A 643 O 90.4 92.1 103.5 81.8 REMARK 620 6 HOH A 684 O 72.8 163.2 122.8 76.1 85.1 REMARK 620 7 HOH A 686 O 93.7 87.1 72.3 95.0 175.8 96.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD2 REMARK 620 2 ASP A 161 OD1 52.5 REMARK 620 3 GLU A 165 OE1 82.2 109.5 REMARK 620 4 GLU A 165 OE2 73.9 126.0 50.9 REMARK 620 5 ASP A 188 OD2 151.5 155.3 78.7 77.6 REMARK 620 6 GLU A 193 O 131.4 86.1 142.0 143.1 74.7 REMARK 620 7 ASP A 194 OD2 108.0 75.5 71.5 122.1 85.7 79.8 REMARK 620 8 HOH A 626 O 87.4 97.0 136.0 85.1 91.8 72.0 151.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 185 OE2 REMARK 620 2 ASN A 187 OD1 71.3 REMARK 620 3 GLU A 193 OE2 143.9 76.9 REMARK 620 4 ASN A 205 OD1 71.3 140.8 142.3 REMARK 620 5 ASP A 206 O 130.1 136.4 66.6 78.7 REMARK 620 6 ASP A 206 OD2 72.7 82.8 86.8 97.0 72.5 REMARK 620 7 MAN D 2 O3 77.7 77.1 111.8 83.9 137.9 148.2 REMARK 620 8 MAN D 2 O4 136.1 119.3 75.2 81.6 74.1 146.3 65.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 711 O REMARK 620 2 HOH A 715 O 86.0 REMARK 620 3 GLU B 93 OE1 133.0 91.6 REMARK 620 4 GLU B 93 OE2 88.5 72.4 46.8 REMARK 620 5 HOH B 654 O 95.6 164.4 76.0 92.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 161 OD2 REMARK 620 2 ASP B 161 OD1 50.8 REMARK 620 3 GLU B 165 OE1 78.6 106.5 REMARK 620 4 GLU B 165 OE2 72.4 123.0 51.5 REMARK 620 5 ASP B 188 OD2 149.9 153.7 75.6 79.4 REMARK 620 6 GLU B 193 O 132.3 88.8 145.2 141.7 77.2 REMARK 620 7 ASP B 194 OD2 104.7 72.2 75.0 126.3 83.4 80.5 REMARK 620 8 HOH B 625 O 93.0 103.5 132.0 80.8 92.8 70.5 150.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 165 OE1 REMARK 620 2 ASP B 194 OD2 78.5 REMARK 620 3 ASP B 194 OD1 125.6 52.6 REMARK 620 4 HOH B 630 O 93.7 111.3 84.9 REMARK 620 5 HOH B 647 O 84.5 75.0 101.6 173.0 REMARK 620 6 HOH B 666 O 82.2 148.1 152.2 95.0 78.1 REMARK 620 7 HOH B 680 O 160.3 117.4 73.8 91.1 88.4 78.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 185 OE2 REMARK 620 2 ASN B 187 OD1 64.7 REMARK 620 3 GLU B 193 OE2 141.6 83.7 REMARK 620 4 ASN B 205 OD1 67.7 129.7 146.5 REMARK 620 5 ASP B 206 O 125.8 143.1 68.7 79.9 REMARK 620 6 ASP B 206 OD2 67.2 81.8 88.0 94.3 73.5 REMARK 620 7 MAN E 2 O3 74.9 72.8 117.6 80.3 141.6 140.7 REMARK 620 8 MAN E 2 O4 137.6 121.3 76.9 85.0 76.8 150.0 68.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 84 OE2 REMARK 620 2 GLU C 165 OE1 86.0 REMARK 620 3 ASP C 194 OD1 151.2 121.4 REMARK 620 4 ASP C 194 OD2 156.8 73.4 51.7 REMARK 620 5 HOH C 719 O 88.5 94.1 81.5 103.3 REMARK 620 6 HOH C 720 O 95.3 81.4 97.2 71.6 173.9 REMARK 620 7 HOH C 742 O 77.8 163.7 74.9 121.9 87.8 97.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 161 OD2 REMARK 620 2 ASP C 161 OD1 50.0 REMARK 620 3 GLU C 165 OE1 78.2 107.4 REMARK 620 4 GLU C 165 OE2 74.7 124.6 49.6 REMARK 620 5 ASP C 188 OD2 149.9 155.3 76.0 76.8 REMARK 620 6 GLU C 193 O 132.0 87.3 144.2 143.5 77.8 REMARK 620 7 ASP C 194 OD2 102.6 72.2 75.1 124.4 85.5 78.9 REMARK 620 8 HOH C 726 O 88.7 99.0 130.7 81.1 96.4 76.1 153.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 185 OE2 REMARK 620 2 ASN C 187 OD1 71.4 REMARK 620 3 GLU C 193 OE2 146.2 78.4 REMARK 620 4 ASN C 205 OD1 68.2 137.7 143.8 REMARK 620 5 ASP C 206 O 132.4 139.6 66.7 79.8 REMARK 620 6 ASP C 206 OD2 79.5 83.6 82.5 100.7 72.6 REMARK 620 7 MAN F 2 O3 73.3 71.7 111.4 85.1 139.3 147.8 REMARK 620 8 MAN F 2 O4 129.9 118.7 78.1 80.1 74.2 146.1 66.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KWT RELATED DB: PDB REMARK 900 RELATED ID: 1KWU RELATED DB: PDB REMARK 900 RELATED ID: 1KWV RELATED DB: PDB REMARK 900 RELATED ID: 1KWW RELATED DB: PDB REMARK 900 RELATED ID: 1KWX RELATED DB: PDB REMARK 900 RELATED ID: 1KWZ RELATED DB: PDB REMARK 900 RELATED ID: 1KX0 RELATED DB: PDB REMARK 900 RELATED ID: 1KX1 RELATED DB: PDB DBREF 1KWY A 73 221 UNP P19999 MABA_RAT 90 238 DBREF 1KWY B 73 221 UNP P19999 MABA_RAT 90 238 DBREF 1KWY C 73 221 UNP P19999 MABA_RAT 90 238 SEQRES 1 A 149 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 A 149 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 A 149 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 A 149 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 A 149 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 A 149 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 A 149 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 A 149 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 A 149 THR TYR SER ASN TRP LYS LYS ASP GLU PRO ASN ASP HIS SEQRES 10 A 149 GLY SER GLY GLU ASP CYS VAL THR ILE VAL ASP ASN GLY SEQRES 11 A 149 LEU TRP ASN ASP ILE SER CYS GLN ALA SER HIS THR ALA SEQRES 12 A 149 VAL CYS GLU PHE PRO ALA SEQRES 1 B 149 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 B 149 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 B 149 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 B 149 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 B 149 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 B 149 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 B 149 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 B 149 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 B 149 THR TYR SER ASN TRP LYS LYS ASP GLU PRO ASN ASP HIS SEQRES 10 B 149 GLY SER GLY GLU ASP CYS VAL THR ILE VAL ASP ASN GLY SEQRES 11 B 149 LEU TRP ASN ASP ILE SER CYS GLN ALA SER HIS THR ALA SEQRES 12 B 149 VAL CYS GLU PHE PRO ALA SEQRES 1 C 149 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 C 149 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 C 149 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 C 149 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 C 149 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 C 149 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 C 149 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 C 149 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 C 149 THR TYR SER ASN TRP LYS LYS ASP GLU PRO ASN ASP HIS SEQRES 10 C 149 GLY SER GLY GLU ASP CYS VAL THR ILE VAL ASP ASN GLY SEQRES 11 C 149 LEU TRP ASN ASP ILE SER CYS GLN ALA SER HIS THR ALA SEQRES 12 C 149 VAL CYS GLU PHE PRO ALA HET MAN D 1 12 HET MAN D 2 11 HET MAN E 1 12 HET MAN E 2 11 HET MAN F 1 12 HET MAN F 2 11 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CL A 506 1 HET CA A 606 1 HET CA B 603 1 HET CA B 604 1 HET CA B 605 1 HET CL B 606 1 HET CA C 703 1 HET CA C 704 1 HET CA C 705 1 HET CL C 706 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 MAN 6(C6 H12 O6) FORMUL 7 CA 10(CA 2+) FORMUL 10 CL 3(CL 1-) FORMUL 20 HOH *381(H2 O) HELIX 1 1 ALA A 73 MET A 103 1 31 HELIX 2 2 PRO A 120 LEU A 131 1 12 HELIX 3 3 ASN A 140 LYS A 152 1 13 HELIX 4 4 ALA B 73 MET B 103 1 31 HELIX 5 5 PHE B 121 LEU B 131 1 11 HELIX 6 6 ASN B 140 LYS B 152 1 13 HELIX 7 7 ASP B 200 GLY B 202 5 3 HELIX 8 8 ALA C 73 MET C 103 1 31 HELIX 9 9 PRO C 120 LEU C 131 1 12 HELIX 10 10 ASN C 140 LYS C 152 1 13 SHEET 1 A 3 PHE A 111 MET A 119 0 SHEET 2 A 3 HIS A 213 PHE A 219 -1 O CYS A 217 N VAL A 113 SHEET 3 A 3 THR A 134 VAL A 135 -1 N THR A 134 O GLU A 218 SHEET 1 B 4 MET A 169 TYR A 170 0 SHEET 2 B 4 ALA A 155 THR A 160 -1 N THR A 160 O MET A 169 SHEET 3 B 4 CYS A 195 ILE A 198 -1 O ILE A 198 N ALA A 155 SHEET 4 B 4 TRP A 204 ILE A 207 -1 O ASN A 205 N THR A 197 SHEET 1 C 3 PHE B 111 PRO B 120 0 SHEET 2 C 3 SER B 212 PHE B 219 -1 O CYS B 217 N VAL B 113 SHEET 3 C 3 THR B 134 VAL B 135 -1 N THR B 134 O GLU B 218 SHEET 1 D 4 MET B 169 TYR B 170 0 SHEET 2 D 4 ALA B 155 THR B 160 -1 N THR B 160 O MET B 169 SHEET 3 D 4 CYS B 195 ILE B 198 -1 O ILE B 198 N ALA B 155 SHEET 4 D 4 TRP B 204 ILE B 207 -1 O ASN B 205 N THR B 197 SHEET 1 E 3 PHE C 111 MET C 119 0 SHEET 2 E 3 HIS C 213 PHE C 219 -1 O CYS C 217 N VAL C 113 SHEET 3 E 3 THR C 134 VAL C 135 -1 N THR C 134 O GLU C 218 SHEET 1 F 4 MET C 169 TYR C 170 0 SHEET 2 F 4 ALA C 155 THR C 160 -1 N THR C 160 O MET C 169 SHEET 3 F 4 CYS C 195 ILE C 198 -1 O ILE C 198 N ALA C 155 SHEET 4 F 4 TRP C 204 ILE C 207 -1 O ASN C 205 N THR C 197 SSBOND 1 CYS A 128 CYS A 217 1555 1555 2.05 SSBOND 2 CYS A 195 CYS A 209 1555 1555 2.06 SSBOND 3 CYS B 128 CYS B 217 1555 1555 2.02 SSBOND 4 CYS B 195 CYS B 209 1555 1555 2.05 SSBOND 5 CYS C 128 CYS C 217 1555 1555 2.06 SSBOND 6 CYS C 195 CYS C 209 1555 1555 2.06 LINK O3 MAN D 1 C1 MAN D 2 1555 1555 1.40 LINK O3 MAN E 1 C1 MAN E 2 1555 1555 1.40 LINK O3 MAN F 1 C1 MAN F 2 1555 1555 1.40 LINK OE1 GLU A 84 CA CA A 505 3545 1555 2.33 LINK OD2 ASP A 161 CA CA A 503 1555 1555 2.30 LINK OD1 ASP A 161 CA CA A 503 1555 1555 2.59 LINK OE1 GLU A 165 CA CA A 503 1555 1555 2.56 LINK OE2 GLU A 165 CA CA A 503 1555 1555 2.54 LINK OE1 GLU A 165 CA CA A 505 1555 1555 2.25 LINK OE2 GLU A 185 CA CA A 504 1555 1555 2.54 LINK OD1 ASN A 187 CA CA A 504 1555 1555 2.53 LINK OD2 ASP A 188 CA CA A 503 1555 1555 2.50 LINK O GLU A 193 CA CA A 503 1555 1555 2.42 LINK OE2 GLU A 193 CA CA A 504 1555 1555 2.50 LINK OD2 ASP A 194 CA CA A 503 1555 1555 2.40 LINK OD2 ASP A 194 CA CA A 505 1555 1555 2.56 LINK OD1 ASP A 194 CA CA A 505 1555 1555 2.54 LINK OD1 ASN A 205 CA CA A 504 1555 1555 2.40 LINK O ASP A 206 CA CA A 504 1555 1555 2.58 LINK OD2 ASP A 206 CA CA A 504 1555 1555 2.31 LINK CA CA A 503 O HOH A 626 1555 1555 2.35 LINK CA CA A 504 O3 MAN D 2 1555 1555 2.55 LINK CA CA A 504 O4 MAN D 2 1555 1555 2.68 LINK CA CA A 505 O HOH A 643 1555 3545 2.39 LINK CA CA A 505 O HOH A 684 1555 3545 2.44 LINK CA CA A 505 O HOH A 686 1555 1555 2.24 LINK CA CA A 606 O HOH A 711 1555 1555 2.42 LINK CA CA A 606 O HOH A 715 1555 1555 2.68 LINK CA CA A 606 OE1 GLU B 93 1555 3545 2.95 LINK CA CA A 606 OE2 GLU B 93 1555 3545 2.51 LINK CA CA A 606 O HOH B 654 1555 3545 2.57 LINK OD2 ASP B 161 CA CA B 603 1555 1555 2.37 LINK OD1 ASP B 161 CA CA B 603 1555 1555 2.72 LINK OE1 GLU B 165 CA CA B 603 1555 1555 2.63 LINK OE2 GLU B 165 CA CA B 603 1555 1555 2.44 LINK OE1 GLU B 165 CA CA B 605 1555 1555 2.29 LINK OE2 GLU B 185 CA CA B 604 1555 1555 2.65 LINK OD1 ASN B 187 CA CA B 604 1555 1555 2.44 LINK OD2 ASP B 188 CA CA B 603 1555 1555 2.78 LINK O GLU B 193 CA CA B 603 1555 1555 2.38 LINK OE2 GLU B 193 CA CA B 604 1555 1555 2.24 LINK OD2 ASP B 194 CA CA B 603 1555 1555 2.33 LINK OD2 ASP B 194 CA CA B 605 1555 1555 2.50 LINK OD1 ASP B 194 CA CA B 605 1555 1555 2.45 LINK OD1 ASN B 205 CA CA B 604 1555 1555 2.58 LINK O ASP B 206 CA CA B 604 1555 1555 2.46 LINK OD2 ASP B 206 CA CA B 604 1555 1555 2.39 LINK CA CA B 603 O HOH B 625 1555 1555 2.26 LINK CA CA B 604 O3 MAN E 2 1555 1555 2.60 LINK CA CA B 604 O4 MAN E 2 1555 1555 2.45 LINK CA CA B 605 O HOH B 630 1555 1555 2.27 LINK CA CA B 605 O HOH B 647 1555 1555 2.47 LINK CA CA B 605 O HOH B 666 1555 1555 2.34 LINK CA CA B 605 O HOH B 680 1555 1555 2.37 LINK OE2 GLU C 84 CA CA C 705 3555 1555 2.39 LINK OD2 ASP C 161 CA CA C 703 1555 1555 2.42 LINK OD1 ASP C 161 CA CA C 703 1555 1555 2.73 LINK OE1 GLU C 165 CA CA C 703 1555 1555 2.54 LINK OE2 GLU C 165 CA CA C 703 1555 1555 2.63 LINK OE1 GLU C 165 CA CA C 705 1555 1555 2.42 LINK OE2 GLU C 185 CA CA C 704 1555 1555 2.51 LINK OD1 ASN C 187 CA CA C 704 1555 1555 2.47 LINK OD2 ASP C 188 CA CA C 703 1555 1555 2.50 LINK O GLU C 193 CA CA C 703 1555 1555 2.29 LINK OE2 GLU C 193 CA CA C 704 1555 1555 2.38 LINK OD2 ASP C 194 CA CA C 703 1555 1555 2.37 LINK OD1 ASP C 194 CA CA C 705 1555 1555 2.48 LINK OD2 ASP C 194 CA CA C 705 1555 1555 2.59 LINK OD1 ASN C 205 CA CA C 704 1555 1555 2.45 LINK O ASP C 206 CA CA C 704 1555 1555 2.55 LINK OD2 ASP C 206 CA CA C 704 1555 1555 2.09 LINK CA CA C 703 O HOH C 726 1555 1555 2.27 LINK CA CA C 704 O3 MAN F 2 1555 1555 2.70 LINK CA CA C 704 O4 MAN F 2 1555 1555 2.54 LINK CA CA C 705 O HOH C 719 1555 1555 2.36 LINK CA CA C 705 O HOH C 720 1555 1555 2.37 LINK CA CA C 705 O HOH C 742 1555 1555 2.60 CISPEP 1 GLU A 185 PRO A 186 0 0.12 CISPEP 2 GLU B 185 PRO B 186 0 -0.24 CISPEP 3 GLU C 185 PRO C 186 0 -0.02 CRYST1 78.860 85.250 98.130 90.00 107.34 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012681 0.000000 0.003959 0.00000 SCALE2 0.000000 0.011730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010676 0.00000 CONECT 442 1120 CONECT 688 3539 CONECT 689 3539 CONECT 720 3539 3541 CONECT 721 3539 CONECT 888 3540 CONECT 902 3540 CONECT 911 3539 CONECT 939 3539 CONECT 944 3540 CONECT 951 3541 CONECT 952 3539 3541 CONECT 958 1065 CONECT 1036 3540 CONECT 1041 3540 CONECT 1045 3540 CONECT 1065 958 CONECT 1120 442 CONECT 1598 2276 CONECT 1844 3544 CONECT 1845 3544 CONECT 1876 3544 3546 CONECT 1877 3544 CONECT 2044 3545 CONECT 2058 3545 CONECT 2067 3544 CONECT 2095 3544 CONECT 2100 3545 CONECT 2107 3546 CONECT 2108 3544 3546 CONECT 2114 2221 CONECT 2192 3545 CONECT 2197 3545 CONECT 2201 3545 CONECT 2221 2114 CONECT 2276 1598 CONECT 2757 3435 CONECT 3003 3548 CONECT 3004 3548 CONECT 3035 3548 3550 CONECT 3036 3548 CONECT 3203 3549 CONECT 3217 3549 CONECT 3226 3548 CONECT 3254 3548 CONECT 3259 3549 CONECT 3266 3550 CONECT 3267 3548 3550 CONECT 3273 3380 CONECT 3351 3549 CONECT 3356 3549 CONECT 3360 3549 CONECT 3380 3273 CONECT 3435 2757 CONECT 3470 3471 3476 3480 CONECT 3471 3470 3472 3477 CONECT 3472 3471 3473 3478 CONECT 3473 3472 3474 3479 CONECT 3474 3473 3475 3480 CONECT 3475 3474 3481 CONECT 3476 3470 CONECT 3477 3471 CONECT 3478 3472 3482 CONECT 3479 3473 CONECT 3480 3470 3474 CONECT 3481 3475 CONECT 3482 3478 3483 3491 CONECT 3483 3482 3484 3488 CONECT 3484 3483 3485 3489 CONECT 3485 3484 3486 3490 CONECT 3486 3485 3487 3491 CONECT 3487 3486 3492 CONECT 3488 3483 CONECT 3489 3484 3540 CONECT 3490 3485 3540 CONECT 3491 3482 3486 CONECT 3492 3487 CONECT 3493 3494 3499 3503 CONECT 3494 3493 3495 3500 CONECT 3495 3494 3496 3501 CONECT 3496 3495 3497 3502 CONECT 3497 3496 3498 3503 CONECT 3498 3497 3504 CONECT 3499 3493 CONECT 3500 3494 CONECT 3501 3495 3505 CONECT 3502 3496 CONECT 3503 3493 3497 CONECT 3504 3498 CONECT 3505 3501 3506 3514 CONECT 3506 3505 3507 3511 CONECT 3507 3506 3508 3512 CONECT 3508 3507 3509 3513 CONECT 3509 3508 3510 3514 CONECT 3510 3509 3515 CONECT 3511 3506 CONECT 3512 3507 3545 CONECT 3513 3508 3545 CONECT 3514 3505 3509 CONECT 3515 3510 CONECT 3516 3517 3522 3526 CONECT 3517 3516 3518 3523 CONECT 3518 3517 3519 3524 CONECT 3519 3518 3520 3525 CONECT 3520 3519 3521 3526 CONECT 3521 3520 3527 CONECT 3522 3516 CONECT 3523 3517 CONECT 3524 3518 3528 CONECT 3525 3519 CONECT 3526 3516 3520 CONECT 3527 3521 CONECT 3528 3524 3529 3537 CONECT 3529 3528 3530 3534 CONECT 3530 3529 3531 3535 CONECT 3531 3530 3532 3536 CONECT 3532 3531 3533 3537 CONECT 3533 3532 3538 CONECT 3534 3529 CONECT 3535 3530 3549 CONECT 3536 3531 3549 CONECT 3537 3528 3532 CONECT 3538 3533 CONECT 3539 688 689 720 721 CONECT 3539 911 939 952 3571 CONECT 3540 888 902 944 1036 CONECT 3540 1041 1045 3489 3490 CONECT 3541 720 951 952 3631 CONECT 3543 3656 3660 CONECT 3544 1844 1845 1876 1877 CONECT 3544 2067 2095 2108 3712 CONECT 3545 2044 2058 2100 2192 CONECT 3545 2197 2201 3512 3513 CONECT 3546 1876 2107 2108 3717 CONECT 3546 3734 3753 3767 CONECT 3548 3003 3004 3035 3036 CONECT 3548 3226 3254 3267 3841 CONECT 3549 3203 3217 3259 3351 CONECT 3549 3356 3360 3535 3536 CONECT 3550 3035 3266 3267 3834 CONECT 3550 3835 3857 CONECT 3571 3539 CONECT 3631 3541 CONECT 3656 3543 CONECT 3660 3543 CONECT 3712 3544 CONECT 3717 3546 CONECT 3734 3546 CONECT 3753 3546 CONECT 3767 3546 CONECT 3834 3550 CONECT 3835 3550 CONECT 3841 3548 CONECT 3857 3550 MASTER 405 0 19 10 21 0 0 6 3922 3 154 36 END