HEADER OXIDOREDUCTASE 04-FEB-02 1KY8 TITLE CRYSTAL STRUCTURE OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE-3- TITLE 2 PHOSPHATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NADP+; COMPND 5 EC: 1.2.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPROTEUS TENAX; SOURCE 3 ORGANISM_TAXID: 2271; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GAPN, ALDH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.POHL,N.BRUNNER,M.WILMANNS,R.HENSEL REVDAT 6 14-FEB-24 1KY8 1 REMARK LINK REVDAT 5 31-JAN-18 1KY8 1 REMARK REVDAT 4 11-OCT-17 1KY8 1 REMARK REVDAT 3 13-JUL-11 1KY8 1 VERSN REVDAT 2 24-FEB-09 1KY8 1 VERSN REVDAT 1 04-FEB-03 1KY8 0 JRNL AUTH E.POHL,N.BRUNNER,M.WILMANNS,R.HENSEL JRNL TITL THE CRYSTAL STRUCTURE OF THE ALLOSTERIC NON-PHOSPHORYLATING JRNL TITL 2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM THE JRNL TITL 3 HYPERTHERMOPHILIC ARCHAEUM THERMOPROTEUS TENAX JRNL REF J.BIOL.CHEM. V. 277 19938 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11842090 JRNL DOI 10.1074/JBC.M112244200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 52004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2626 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 386 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.480 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-99; 01-JAN-99; 01-JAN-99; REMARK 200 01-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100; 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y; Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG; EMBL/DESY, REMARK 200 HAMBURG; EMBL/DESY, HAMBURG; REMARK 200 EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B; BW7A; BW7A; BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8469; 0.9796; 0.9792; 0.9724 REMARK 200 MONOCHROMATOR : SI 111; FOCUSING DOUBLE CRYSTAL; REMARK 200 FOCUSING DOUBLE CRYSTAL; REMARK 200 FOCUSING DOUBLE CRYSTAL REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE; IMAGE REMARK 200 PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH; REMARK 200 MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52004 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD; MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 20K, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.03333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.06667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.03333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.06667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 44.03333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 88.06667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FUNCTIONAL TETRAMER IS REMARK 300 GENERATED BY THE CRYSTALLOGRAPHIC REMARK 300 SYMMETRY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -92.60000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 160.38790 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 44.03333 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -92.60000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 160.38790 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 44.03333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 ASP A 328 CG OD1 OD2 REMARK 470 LYS A 499 CG CD CE NZ REMARK 470 TYR A 500 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 501 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 602 O HOH A 986 1.91 REMARK 500 SD MET A 103 O HOH A 858 2.00 REMARK 500 CE MET A 103 O HOH A 858 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 23 47.25 -93.54 REMARK 500 SER A 30 25.22 -144.64 REMARK 500 LYS A 131 22.44 -64.41 REMARK 500 LYS A 132 -19.14 -148.56 REMARK 500 TYR A 169 54.61 -145.20 REMARK 500 ASP A 196 68.40 -158.93 REMARK 500 SER A 291 129.99 -34.21 REMARK 500 GLN A 295 49.92 -87.03 REMARK 500 PRO A 332 1.49 -62.18 REMARK 500 PHE A 397 87.05 -68.81 REMARK 500 LEU A 423 -76.87 -84.26 REMARK 500 LYS A 466 -133.83 50.17 REMARK 500 PHE A 471 175.25 75.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 249 OE2 REMARK 620 2 GLY A 255 O 94.9 REMARK 620 3 HOH A 620 O 102.9 79.2 REMARK 620 4 HOH A 629 O 85.7 104.1 170.6 REMARK 620 5 HOH A 658 O 175.8 89.2 77.6 93.6 REMARK 620 6 HOH A 712 O 90.8 166.7 87.8 88.3 85.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 999 DBREF 1KY8 A 1 501 UNP O57693 O57693_THETE 1 501 SEQRES 1 A 501 MET ARG ALA GLY LEU LEU GLU GLY VAL ILE LYS GLU LYS SEQRES 2 A 501 GLY GLY VAL PRO VAL TYR PRO SER TYR LEU ALA GLY GLU SEQRES 3 A 501 TRP GLY GLY SER GLY GLN GLU ILE GLU VAL LYS SER PRO SEQRES 4 A 501 ILE ASP LEU ALA THR ILE ALA LYS VAL ILE SER PRO SER SEQRES 5 A 501 ARG GLU GLU VAL GLU ARG THR LEU ASP VAL LEU PHE LYS SEQRES 6 A 501 ARG GLY ARG TRP SER ALA ARG ASP MET PRO GLY THR GLU SEQRES 7 A 501 ARG LEU ALA VAL LEU ARG LYS ALA ALA ASP ILE ILE GLU SEQRES 8 A 501 ARG ASN LEU ASP VAL PHE ALA GLU VAL LEU VAL MET ASN SEQRES 9 A 501 ALA GLY LYS PRO LYS SER ALA ALA VAL GLY GLU VAL LYS SEQRES 10 A 501 ALA ALA VAL ASP ARG LEU ARG LEU ALA GLU LEU ASP LEU SEQRES 11 A 501 LYS LYS ILE GLY GLY ASP TYR ILE PRO GLY ASP TRP THR SEQRES 12 A 501 TYR ASP THR LEU GLU THR GLU GLY LEU VAL ARG ARG GLU SEQRES 13 A 501 PRO LEU GLY VAL VAL ALA ALA ILE THR PRO PHE ASN TYR SEQRES 14 A 501 PRO LEU PHE ASP ALA VAL ASN LYS ILE THR TYR SER PHE SEQRES 15 A 501 ILE TYR GLY ASN ALA VAL VAL VAL LYS PRO SER ILE SER SEQRES 16 A 501 ASP PRO LEU PRO ALA ALA MET ALA VAL LYS ALA LEU LEU SEQRES 17 A 501 ASP ALA GLY PHE PRO PRO ASP ALA ILE ALA LEU LEU ASN SEQRES 18 A 501 LEU PRO GLY LYS GLU ALA GLU LYS ILE VAL ALA ASP ASP SEQRES 19 A 501 ARG VAL ALA ALA VAL SER PHE THR GLY SER THR GLU VAL SEQRES 20 A 501 GLY GLU ARG VAL VAL LYS VAL GLY GLY VAL LYS GLN TYR SEQRES 21 A 501 VAL MET GLU LEU GLY GLY GLY ASP PRO ALA ILE VAL LEU SEQRES 22 A 501 GLU ASP ALA ASP LEU ASP LEU ALA ALA ASP LYS ILE ALA SEQRES 23 A 501 ARG GLY ILE TYR SER TYR ALA GLY GLN ARG CYS ASP ALA SEQRES 24 A 501 ILE LYS LEU VAL LEU ALA GLU ARG PRO VAL TYR GLY LYS SEQRES 25 A 501 LEU VAL GLU GLU VAL ALA LYS ARG LEU SER SER LEU ARG SEQRES 26 A 501 VAL GLY ASP PRO ARG ASP PRO THR VAL ASP VAL GLY PRO SEQRES 27 A 501 LEU ILE SER PRO SER ALA VAL ASP GLU MET MET ALA ALA SEQRES 28 A 501 ILE GLU ASP ALA VAL GLU LYS GLY GLY ARG VAL LEU ALA SEQRES 29 A 501 GLY GLY ARG ARG LEU GLY PRO THR TYR VAL GLN PRO THR SEQRES 30 A 501 LEU VAL GLU ALA PRO ALA ASP ARG VAL LYS ASP MET VAL SEQRES 31 A 501 LEU TYR LYS ARG GLU VAL PHE ALA PRO VAL ALA SER ALA SEQRES 32 A 501 VAL GLU VAL LYS ASP LEU ASP GLN ALA ILE GLU LEU ALA SEQRES 33 A 501 ASN GLY ARG PRO TYR GLY LEU ASP ALA ALA VAL PHE GLY SEQRES 34 A 501 ARG ASP VAL VAL LYS ILE ARG ARG ALA VAL ARG LEU LEU SEQRES 35 A 501 GLU VAL GLY ALA ILE TYR ILE ASN ASP MET PRO ARG HIS SEQRES 36 A 501 GLY ILE GLY TYR TYR PRO PHE GLY GLY ARG LYS LYS SER SEQRES 37 A 501 GLY VAL PHE ARG GLU GLY ILE GLY TYR ALA VAL GLU ALA SEQRES 38 A 501 VAL THR ALA TYR LYS THR ILE VAL PHE ASN TYR LYS GLY SEQRES 39 A 501 LYS GLY VAL TRP LYS TYR GLU HET NA A1001 1 HET NAP A 999 48 HETNAM NA SODIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NA NA 1+ FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *386(H2 O) HELIX 1 1 ALA A 3 GLU A 7 5 5 HELIX 2 2 SER A 52 ARG A 66 1 15 HELIX 3 3 ARG A 66 MET A 74 1 9 HELIX 4 4 PRO A 75 ASN A 93 1 19 HELIX 5 5 ASN A 93 GLY A 106 1 14 HELIX 6 6 PRO A 108 LEU A 125 1 18 HELIX 7 7 ALA A 126 LYS A 131 5 6 HELIX 8 8 TYR A 169 TYR A 184 1 16 HELIX 9 9 PRO A 197 GLY A 211 1 15 HELIX 10 10 PRO A 223 GLU A 226 5 4 HELIX 11 11 ALA A 227 ASP A 233 1 7 HELIX 12 12 SER A 244 GLY A 256 1 13 HELIX 13 13 ASP A 277 SER A 291 1 15 HELIX 14 14 TYR A 292 GLN A 295 5 4 HELIX 15 15 ARG A 307 SER A 323 1 17 HELIX 16 16 SER A 341 LYS A 358 1 18 HELIX 17 17 PRO A 382 LYS A 387 1 6 HELIX 18 18 MET A 389 ARG A 394 1 6 HELIX 19 19 ASP A 408 GLY A 418 1 11 HELIX 20 20 ASP A 431 LEU A 442 1 12 HELIX 21 21 ALA A 478 VAL A 482 1 5 SHEET 1 A 4 LYS A 11 LYS A 13 0 SHEET 2 A 4 VAL A 16 TYR A 19 -1 O VAL A 18 N LYS A 11 SHEET 3 A 4 THR A 44 ILE A 49 1 O LYS A 47 N TYR A 19 SHEET 4 A 4 GLU A 33 LYS A 37 -1 N VAL A 36 O ALA A 46 SHEET 1 B 2 SER A 21 TYR A 22 0 SHEET 2 B 2 TRP A 27 GLY A 28 -1 O GLY A 28 N SER A 21 SHEET 1 C 3 ASP A 136 PRO A 139 0 SHEET 2 C 3 THR A 149 PRO A 157 -1 O GLY A 151 N ILE A 138 SHEET 3 C 3 THR A 483 ASN A 491 -1 O ALA A 484 N GLU A 156 SHEET 1 D 6 ILE A 217 LEU A 219 0 SHEET 2 D 6 ALA A 187 LYS A 191 1 N VAL A 190 O ALA A 218 SHEET 3 D 6 VAL A 160 ILE A 164 1 N ALA A 163 O VAL A 189 SHEET 4 D 6 ALA A 238 THR A 242 1 O ALA A 238 N ALA A 162 SHEET 5 D 6 GLN A 259 GLU A 263 1 O GLU A 263 N PHE A 241 SHEET 6 D 6 GLY A 469 VAL A 470 -1 O VAL A 470 N MET A 262 SHEET 1 E 7 ARG A 361 ALA A 364 0 SHEET 2 E 7 THR A 377 GLU A 380 -1 O GLU A 380 N ARG A 361 SHEET 3 E 7 VAL A 400 VAL A 406 1 O ALA A 401 N VAL A 379 SHEET 4 E 7 ILE A 300 GLU A 306 1 N VAL A 303 O SER A 402 SHEET 5 E 7 ASP A 268 VAL A 272 1 N ALA A 270 O LEU A 304 SHEET 6 E 7 ASP A 424 PHE A 428 1 O PHE A 428 N ILE A 271 SHEET 7 E 7 ALA A 446 ILE A 449 1 O TYR A 448 N VAL A 427 SHEET 1 F 2 ARG A 368 GLY A 370 0 SHEET 2 F 2 TYR A 373 VAL A 374 -1 O TYR A 373 N GLY A 370 SHEET 1 G 2 TYR A 421 GLY A 422 0 SHEET 2 G 2 ARG A 465 LYS A 466 -1 N ARG A 465 O GLY A 422 LINK OE2 GLU A 249 NA NA A1001 9555 1555 2.58 LINK O GLY A 255 NA NA A1001 1555 1555 2.26 LINK O HOH A 620 NA NA A1001 1555 1555 2.61 LINK O HOH A 629 NA NA A1001 1555 1555 2.45 LINK O HOH A 658 NA NA A1001 1555 1555 2.58 LINK O HOH A 712 NA NA A1001 1555 1555 2.45 SITE 1 AC1 6 GLU A 249 GLY A 255 HOH A 620 HOH A 629 SITE 2 AC1 6 HOH A 658 HOH A 712 SITE 1 AC2 29 ILE A 164 THR A 165 PRO A 166 PHE A 167 SITE 2 AC2 29 ASN A 168 LYS A 191 SER A 193 ILE A 194 SITE 3 AC2 29 PRO A 223 GLY A 224 LYS A 225 ALA A 227 SITE 4 AC2 29 GLU A 228 PHE A 241 THR A 242 GLY A 243 SITE 5 AC2 29 SER A 244 VAL A 247 GLU A 263 LEU A 264 SITE 6 AC2 29 GLY A 265 GLY A 266 CYS A 297 GLU A 395 SITE 7 AC2 29 PHE A 397 HOH A 660 HOH A 730 HOH A 917 SITE 8 AC2 29 HOH A 968 CRYST1 185.200 185.200 132.100 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005400 0.003117 0.000000 0.00000 SCALE2 0.000000 0.006235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007570 0.00000