HEADER TRANSFERASE 06-FEB-02 1KYW TITLE CRYSTAL STRUCTURE ANALYSIS OF CAFFEIC ACID/5-HYDROXYFERULIC ACID 3/5- TITLE 2 O-METHYLTRANSFERASE IN COMPLEX WITH 5-HYDROXYCONIFERALDEHYDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAFFEIC ACID 3-O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, C, F; COMPND 4 SYNONYM: COMT; COMPND 5 EC: 2.1.1.68; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEDICAGO SATIVA; SOURCE 3 ORGANISM_TAXID: 3879; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS O-METHYLTRANSFERASE, LIGNIFICATION, PROTEIN-LIGAND COMPLEX, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZUBIETA,P.KOTA,J.-L.FERRER,R.A.DIXON,J.P.NOEL REVDAT 4 03-APR-24 1KYW 1 REMARK LINK REVDAT 3 24-FEB-09 1KYW 1 VERSN REVDAT 2 01-APR-03 1KYW 1 JRNL REVDAT 1 28-AUG-02 1KYW 0 JRNL AUTH C.ZUBIETA,P.KOTA,J.L.FERRER,R.A.DIXON,J.P.NOEL JRNL TITL STRUCTURAL BASIS FOR THE MODULATION OF LIGNIN MONOMER JRNL TITL 2 METHYLATION BY CAFFEIC ACID/5-HYDROXYFERULIC ACID JRNL TITL 3 3/5-O-METHYLTRANSFERASE. JRNL REF PLANT CELL V. 14 1265 2002 JRNL REFN ISSN 1040-4651 JRNL PMID 12084826 JRNL DOI 10.1105/TPC.001412 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 97.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1028582.190 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 47650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2393 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4640 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 255 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8247 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.12000 REMARK 3 B22 (A**2) : -3.89000 REMARK 3 B33 (A**2) : -1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 16.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.580 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.140 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.950 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 48.35 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : SAH_PARA.TXT REMARK 3 PARAMETER FILE 3 : CONIFERYL_PARA.TXT REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : SAH_TOPO.TXT REMARK 3 TOPOLOGY FILE 3 : CONIFERYL_TOPO.TXT REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47650 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : 0.55700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PARTIAL SELENO-METHIONINE MODEL OF COMT REMARK 200 (UNPUBLISHED) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CALCIUM ACTETATE, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -40.70676 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 104.56920 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 GLN A 8 REMARK 465 ILE A 9 REMARK 465 THR A 10 REMARK 465 PRO A 11 REMARK 465 THR A 12 REMARK 465 LYS A 363 REMARK 465 LYS A 364 REMARK 465 VAL A 365 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 SER C 3 REMARK 465 THR C 4 REMARK 465 MET F 1 REMARK 465 GLY F 2 REMARK 465 SER F 3 REMARK 465 THR F 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR C 10 OG1 THR C 10 2556 1.59 REMARK 500 N THR C 10 OG1 THR C 10 2556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE C 9 CA ILE C 9 C 0.161 REMARK 500 ILE C 9 C THR C 10 N 0.164 REMARK 500 THR C 10 N THR C 10 CA 0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR C 222 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 GLU F 119 N - CA - C ANGL. DEV. = -24.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 108.93 -50.00 REMARK 500 LEU A 192 6.45 -65.39 REMARK 500 GLU A 199 -93.95 -54.68 REMARK 500 ALA A 239 113.14 -34.66 REMARK 500 PRO A 257 116.95 -33.19 REMARK 500 MET A 264 -85.42 -106.32 REMARK 500 LYS A 265 113.25 72.59 REMARK 500 ASP A 289 18.24 38.69 REMARK 500 GLN A 345 -32.83 67.93 REMARK 500 HIS A 350 -96.60 -73.66 REMARK 500 CYS A 351 -159.74 -120.72 REMARK 500 THR C 7 -59.73 56.65 REMARK 500 GLN C 8 29.95 42.26 REMARK 500 ILE C 9 -128.06 75.46 REMARK 500 THR C 10 92.11 -61.70 REMARK 500 PRO C 11 -165.63 -47.10 REMARK 500 SER C 15 -148.74 -76.63 REMARK 500 LYS C 50 -9.91 -58.24 REMARK 500 ASN C 70 109.77 -53.69 REMARK 500 THR C 110 -52.77 -28.78 REMARK 500 ALA C 112 -7.83 -58.22 REMARK 500 LYS C 113 -79.86 -56.98 REMARK 500 TYR C 114 1.59 -54.53 REMARK 500 LYS C 117 31.46 -65.85 REMARK 500 GLU C 119 86.47 -59.12 REMARK 500 PHE C 198 31.31 -89.18 REMARK 500 LYS C 202 152.96 51.54 REMARK 500 SER C 203 112.32 72.70 REMARK 500 LEU C 204 108.75 -165.18 REMARK 500 ASN C 216 16.99 -39.29 REMARK 500 THR C 217 -38.98 134.65 REMARK 500 SER C 220 16.26 -66.93 REMARK 500 ALA C 239 133.90 -31.66 REMARK 500 PRO C 240 -116.49 -58.33 REMARK 500 SER C 241 102.11 163.27 REMARK 500 VAL C 254 -64.38 -100.64 REMARK 500 MET C 264 -82.93 -89.82 REMARK 500 LYS C 265 94.90 70.90 REMARK 500 ASP C 289 0.06 -51.24 REMARK 500 ASN C 324 170.18 -46.43 REMARK 500 GLN C 345 11.69 39.32 REMARK 500 HIS C 350 -157.50 -90.01 REMARK 500 CYS C 351 177.71 -45.54 REMARK 500 ASN C 355 -26.87 81.52 REMARK 500 SER F 28 35.48 -141.66 REMARK 500 LYS F 117 -172.12 -58.03 REMARK 500 ASN F 118 81.10 55.05 REMARK 500 ASP F 120 35.17 109.91 REMARK 500 MET F 264 -88.96 -87.79 REMARK 500 LYS F 265 98.99 71.50 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH C 1698 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH F 1699 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HFL F 0 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KYZ RELATED DB: PDB REMARK 900 1KYZ IS THE CRYSTAL STRUCTURE ANALYSIS OF CAFFEIC ACID/5- REMARK 900 HYDROXYFERULIC ACID 3/5-O-METHYLTRANSFERASE FERULIC ACID COMPLEX. DBREF 1KYW A 1 365 UNP P28002 COMT1_MEDSA 1 365 DBREF 1KYW C 1 365 UNP P28002 COMT1_MEDSA 1 365 DBREF 1KYW F 1 365 UNP P28002 COMT1_MEDSA 1 365 SEQRES 1 A 365 MET GLY SER THR GLY GLU THR GLN ILE THR PRO THR HIS SEQRES 2 A 365 ILE SER ASP GLU GLU ALA ASN LEU PHE ALA MET GLN LEU SEQRES 3 A 365 ALA SER ALA SER VAL LEU PRO MET ILE LEU LYS SER ALA SEQRES 4 A 365 LEU GLU LEU ASP LEU LEU GLU ILE ILE ALA LYS ALA GLY SEQRES 5 A 365 PRO GLY ALA GLN ILE SER PRO ILE GLU ILE ALA SER GLN SEQRES 6 A 365 LEU PRO THR THR ASN PRO ASP ALA PRO VAL MET LEU ASP SEQRES 7 A 365 ARG MET LEU ARG LEU LEU ALA CYS TYR ILE ILE LEU THR SEQRES 8 A 365 CYS SER VAL ARG THR GLN GLN ASP GLY LYS VAL GLN ARG SEQRES 9 A 365 LEU TYR GLY LEU ALA THR VAL ALA LYS TYR LEU VAL LYS SEQRES 10 A 365 ASN GLU ASP GLY VAL SER ILE SER ALA LEU ASN LEU MET SEQRES 11 A 365 ASN GLN ASP LYS VAL LEU MET GLU SER TRP TYR HIS LEU SEQRES 12 A 365 LYS ASP ALA VAL LEU ASP GLY GLY ILE PRO PHE ASN LYS SEQRES 13 A 365 ALA TYR GLY MET THR ALA PHE GLU TYR HIS GLY THR ASP SEQRES 14 A 365 PRO ARG PHE ASN LYS VAL PHE ASN LYS GLY MET SER ASP SEQRES 15 A 365 HIS SER THR ILE THR MET LYS LYS ILE LEU GLU THR TYR SEQRES 16 A 365 THR GLY PHE GLU GLY LEU LYS SER LEU VAL ASP VAL GLY SEQRES 17 A 365 GLY GLY THR GLY ALA VAL ILE ASN THR ILE VAL SER LYS SEQRES 18 A 365 TYR PRO THR ILE LYS GLY ILE ASN PHE ASP LEU PRO HIS SEQRES 19 A 365 VAL ILE GLU ASP ALA PRO SER TYR PRO GLY VAL GLU HIS SEQRES 20 A 365 VAL GLY GLY ASP MET PHE VAL SER ILE PRO LYS ALA ASP SEQRES 21 A 365 ALA VAL PHE MET LYS TRP ILE CYS HIS ASP TRP SER ASP SEQRES 22 A 365 GLU HIS CYS LEU LYS PHE LEU LYS ASN CYS TYR GLU ALA SEQRES 23 A 365 LEU PRO ASP ASN GLY LYS VAL ILE VAL ALA GLU CYS ILE SEQRES 24 A 365 LEU PRO VAL ALA PRO ASP SER SER LEU ALA THR LYS GLY SEQRES 25 A 365 VAL VAL HIS ILE ASP VAL ILE MET LEU ALA HIS ASN PRO SEQRES 26 A 365 GLY GLY LYS GLU ARG THR GLN LYS GLU PHE GLU ASP LEU SEQRES 27 A 365 ALA LYS GLY ALA GLY PHE GLN GLY PHE LYS VAL HIS CYS SEQRES 28 A 365 ASN ALA PHE ASN THR TYR ILE MET GLU PHE LEU LYS LYS SEQRES 29 A 365 VAL SEQRES 1 C 365 MET GLY SER THR GLY GLU THR GLN ILE THR PRO THR HIS SEQRES 2 C 365 ILE SER ASP GLU GLU ALA ASN LEU PHE ALA MET GLN LEU SEQRES 3 C 365 ALA SER ALA SER VAL LEU PRO MET ILE LEU LYS SER ALA SEQRES 4 C 365 LEU GLU LEU ASP LEU LEU GLU ILE ILE ALA LYS ALA GLY SEQRES 5 C 365 PRO GLY ALA GLN ILE SER PRO ILE GLU ILE ALA SER GLN SEQRES 6 C 365 LEU PRO THR THR ASN PRO ASP ALA PRO VAL MET LEU ASP SEQRES 7 C 365 ARG MET LEU ARG LEU LEU ALA CYS TYR ILE ILE LEU THR SEQRES 8 C 365 CYS SER VAL ARG THR GLN GLN ASP GLY LYS VAL GLN ARG SEQRES 9 C 365 LEU TYR GLY LEU ALA THR VAL ALA LYS TYR LEU VAL LYS SEQRES 10 C 365 ASN GLU ASP GLY VAL SER ILE SER ALA LEU ASN LEU MET SEQRES 11 C 365 ASN GLN ASP LYS VAL LEU MET GLU SER TRP TYR HIS LEU SEQRES 12 C 365 LYS ASP ALA VAL LEU ASP GLY GLY ILE PRO PHE ASN LYS SEQRES 13 C 365 ALA TYR GLY MET THR ALA PHE GLU TYR HIS GLY THR ASP SEQRES 14 C 365 PRO ARG PHE ASN LYS VAL PHE ASN LYS GLY MET SER ASP SEQRES 15 C 365 HIS SER THR ILE THR MET LYS LYS ILE LEU GLU THR TYR SEQRES 16 C 365 THR GLY PHE GLU GLY LEU LYS SER LEU VAL ASP VAL GLY SEQRES 17 C 365 GLY GLY THR GLY ALA VAL ILE ASN THR ILE VAL SER LYS SEQRES 18 C 365 TYR PRO THR ILE LYS GLY ILE ASN PHE ASP LEU PRO HIS SEQRES 19 C 365 VAL ILE GLU ASP ALA PRO SER TYR PRO GLY VAL GLU HIS SEQRES 20 C 365 VAL GLY GLY ASP MET PHE VAL SER ILE PRO LYS ALA ASP SEQRES 21 C 365 ALA VAL PHE MET LYS TRP ILE CYS HIS ASP TRP SER ASP SEQRES 22 C 365 GLU HIS CYS LEU LYS PHE LEU LYS ASN CYS TYR GLU ALA SEQRES 23 C 365 LEU PRO ASP ASN GLY LYS VAL ILE VAL ALA GLU CYS ILE SEQRES 24 C 365 LEU PRO VAL ALA PRO ASP SER SER LEU ALA THR LYS GLY SEQRES 25 C 365 VAL VAL HIS ILE ASP VAL ILE MET LEU ALA HIS ASN PRO SEQRES 26 C 365 GLY GLY LYS GLU ARG THR GLN LYS GLU PHE GLU ASP LEU SEQRES 27 C 365 ALA LYS GLY ALA GLY PHE GLN GLY PHE LYS VAL HIS CYS SEQRES 28 C 365 ASN ALA PHE ASN THR TYR ILE MET GLU PHE LEU LYS LYS SEQRES 29 C 365 VAL SEQRES 1 F 365 MET GLY SER THR GLY GLU THR GLN ILE THR PRO THR HIS SEQRES 2 F 365 ILE SER ASP GLU GLU ALA ASN LEU PHE ALA MET GLN LEU SEQRES 3 F 365 ALA SER ALA SER VAL LEU PRO MET ILE LEU LYS SER ALA SEQRES 4 F 365 LEU GLU LEU ASP LEU LEU GLU ILE ILE ALA LYS ALA GLY SEQRES 5 F 365 PRO GLY ALA GLN ILE SER PRO ILE GLU ILE ALA SER GLN SEQRES 6 F 365 LEU PRO THR THR ASN PRO ASP ALA PRO VAL MET LEU ASP SEQRES 7 F 365 ARG MET LEU ARG LEU LEU ALA CYS TYR ILE ILE LEU THR SEQRES 8 F 365 CYS SER VAL ARG THR GLN GLN ASP GLY LYS VAL GLN ARG SEQRES 9 F 365 LEU TYR GLY LEU ALA THR VAL ALA LYS TYR LEU VAL LYS SEQRES 10 F 365 ASN GLU ASP GLY VAL SER ILE SER ALA LEU ASN LEU MET SEQRES 11 F 365 ASN GLN ASP LYS VAL LEU MET GLU SER TRP TYR HIS LEU SEQRES 12 F 365 LYS ASP ALA VAL LEU ASP GLY GLY ILE PRO PHE ASN LYS SEQRES 13 F 365 ALA TYR GLY MET THR ALA PHE GLU TYR HIS GLY THR ASP SEQRES 14 F 365 PRO ARG PHE ASN LYS VAL PHE ASN LYS GLY MET SER ASP SEQRES 15 F 365 HIS SER THR ILE THR MET LYS LYS ILE LEU GLU THR TYR SEQRES 16 F 365 THR GLY PHE GLU GLY LEU LYS SER LEU VAL ASP VAL GLY SEQRES 17 F 365 GLY GLY THR GLY ALA VAL ILE ASN THR ILE VAL SER LYS SEQRES 18 F 365 TYR PRO THR ILE LYS GLY ILE ASN PHE ASP LEU PRO HIS SEQRES 19 F 365 VAL ILE GLU ASP ALA PRO SER TYR PRO GLY VAL GLU HIS SEQRES 20 F 365 VAL GLY GLY ASP MET PHE VAL SER ILE PRO LYS ALA ASP SEQRES 21 F 365 ALA VAL PHE MET LYS TRP ILE CYS HIS ASP TRP SER ASP SEQRES 22 F 365 GLU HIS CYS LEU LYS PHE LEU LYS ASN CYS TYR GLU ALA SEQRES 23 F 365 LEU PRO ASP ASN GLY LYS VAL ILE VAL ALA GLU CYS ILE SEQRES 24 F 365 LEU PRO VAL ALA PRO ASP SER SER LEU ALA THR LYS GLY SEQRES 25 F 365 VAL VAL HIS ILE ASP VAL ILE MET LEU ALA HIS ASN PRO SEQRES 26 F 365 GLY GLY LYS GLU ARG THR GLN LYS GLU PHE GLU ASP LEU SEQRES 27 F 365 ALA LYS GLY ALA GLY PHE GLN GLY PHE LYS VAL HIS CYS SEQRES 28 F 365 ASN ALA PHE ASN THR TYR ILE MET GLU PHE LEU LYS LYS SEQRES 29 F 365 VAL HET SAH C1698 26 HET SAH F1699 26 HET HFL F 0 15 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM HFL 5-(3,3-DIHYDROXYPROPENY)-3-METHOXY-BENZENE-1,2-DIOL FORMUL 4 SAH 2(C14 H20 N6 O5 S) FORMUL 6 HFL C10 H12 O5 FORMUL 7 HOH *224(H2 O) HELIX 1 1 SER A 15 SER A 28 1 14 HELIX 2 2 SER A 30 ASP A 43 1 14 HELIX 3 3 ASP A 43 LYS A 50 1 8 HELIX 4 4 SER A 58 SER A 64 1 7 HELIX 5 5 ASP A 72 TYR A 87 1 16 HELIX 6 6 ALA A 109 LEU A 115 1 7 HELIX 7 7 ILE A 124 GLN A 132 1 9 HELIX 8 8 ASP A 133 TYR A 141 1 9 HELIX 9 9 HIS A 142 GLY A 150 1 9 HELIX 10 10 ILE A 152 GLY A 159 1 8 HELIX 11 11 THR A 161 ASP A 169 1 9 HELIX 12 12 ASP A 169 LEU A 192 1 24 HELIX 13 13 ALA A 213 TYR A 222 1 10 HELIX 14 14 LEU A 232 GLU A 237 1 6 HELIX 15 15 ILE A 267 TRP A 271 5 5 HELIX 16 16 SER A 272 LEU A 287 1 16 HELIX 17 17 SER A 307 ASN A 324 1 18 HELIX 18 18 THR A 331 ALA A 342 1 12 HELIX 19 19 GLU C 18 SER C 28 1 11 HELIX 20 20 SER C 30 LEU C 42 1 13 HELIX 21 21 ASP C 43 LYS C 50 1 8 HELIX 22 22 SER C 58 SER C 64 1 7 HELIX 23 23 ASP C 72 TYR C 87 1 16 HELIX 24 24 THR C 110 LYS C 113 5 4 HELIX 25 25 ILE C 124 GLN C 132 1 9 HELIX 26 26 ASP C 133 TYR C 141 1 9 HELIX 27 27 HIS C 142 GLY C 150 1 9 HELIX 28 28 ILE C 152 GLY C 159 1 8 HELIX 29 29 THR C 161 ASP C 169 1 9 HELIX 30 30 ASP C 169 TYR C 195 1 27 HELIX 31 31 LEU C 232 GLU C 237 1 6 HELIX 32 32 ILE C 267 TRP C 271 5 5 HELIX 33 33 SER C 272 LEU C 287 1 16 HELIX 34 34 SER C 307 ASN C 324 1 18 HELIX 35 35 GLN C 332 ALA C 342 1 11 HELIX 36 36 SER F 15 GLU F 17 5 3 HELIX 37 37 GLU F 18 SER F 28 1 11 HELIX 38 38 SER F 30 ASP F 43 1 14 HELIX 39 39 ASP F 43 LYS F 50 1 8 HELIX 40 40 SER F 58 SER F 64 1 7 HELIX 41 41 ASP F 72 TYR F 87 1 16 HELIX 42 42 THR F 110 VAL F 116 5 7 HELIX 43 43 ILE F 124 GLN F 132 1 9 HELIX 44 44 ASP F 133 TYR F 141 1 9 HELIX 45 45 HIS F 142 GLY F 150 1 9 HELIX 46 46 ILE F 152 GLY F 159 1 8 HELIX 47 47 THR F 161 ASP F 169 1 9 HELIX 48 48 ASP F 169 TYR F 195 1 27 HELIX 49 49 GLY F 212 TYR F 222 1 11 HELIX 50 50 LEU F 232 GLU F 237 1 6 HELIX 51 51 ILE F 267 TRP F 271 5 5 HELIX 52 52 SER F 272 ALA F 286 1 15 HELIX 53 53 SER F 307 ASN F 324 1 18 HELIX 54 54 THR F 331 ALA F 342 1 12 SHEET 1 A 2 LEU A 90 THR A 96 0 SHEET 2 A 2 VAL A 102 LEU A 108 -1 O GLN A 103 N ARG A 95 SHEET 1 B 7 VAL A 245 GLY A 249 0 SHEET 2 B 7 LYS A 226 ASP A 231 1 N GLY A 227 O GLU A 246 SHEET 3 B 7 SER A 203 VAL A 207 1 N LEU A 204 O LYS A 226 SHEET 4 B 7 VAL A 262 PHE A 263 1 O PHE A 263 N VAL A 205 SHEET 5 B 7 VAL A 293 GLU A 297 1 O ILE A 294 N VAL A 262 SHEET 6 B 7 THR A 356 PHE A 361 -1 O MET A 359 N VAL A 295 SHEET 7 B 7 PHE A 347 ALA A 353 -1 N ALA A 353 O THR A 356 SHEET 1 C 2 LEU C 90 THR C 96 0 SHEET 2 C 2 VAL C 102 LEU C 108 -1 O GLN C 103 N ARG C 95 SHEET 1 D 7 PHE C 347 ALA C 353 0 SHEET 2 D 7 THR C 356 LEU C 362 -1 O THR C 356 N ALA C 353 SHEET 3 D 7 LYS C 292 LEU C 300 -1 N VAL C 295 O MET C 359 SHEET 4 D 7 ALA C 261 PHE C 263 1 N VAL C 262 O ILE C 294 SHEET 5 D 7 LEU C 204 VAL C 207 1 N VAL C 205 O PHE C 263 SHEET 6 D 7 GLY C 227 ASP C 231 1 O ILE C 228 N ASP C 206 SHEET 7 D 7 VAL C 245 GLY C 249 1 O GLU C 246 N GLY C 227 SHEET 1 E 4 PHE C 347 ALA C 353 0 SHEET 2 E 4 THR C 356 LEU C 362 -1 O THR C 356 N ALA C 353 SHEET 3 E 4 LYS C 292 LEU C 300 -1 N VAL C 295 O MET C 359 SHEET 4 E 4 ARG C 330 THR C 331 1 O ARG C 330 N LEU C 300 SHEET 1 F 2 LEU F 90 THR F 96 0 SHEET 2 F 2 VAL F 102 LEU F 108 -1 O GLY F 107 N THR F 91 SHEET 1 G 7 VAL F 245 GLY F 249 0 SHEET 2 G 7 LYS F 226 ASP F 231 1 N ASN F 229 O VAL F 248 SHEET 3 G 7 SER F 203 VAL F 207 1 N ASP F 206 O ILE F 228 SHEET 4 G 7 ALA F 261 PHE F 263 1 O PHE F 263 N VAL F 205 SHEET 5 G 7 LYS F 292 GLU F 297 1 O ILE F 294 N VAL F 262 SHEET 6 G 7 THR F 356 LEU F 362 -1 O MET F 359 N VAL F 295 SHEET 7 G 7 GLY F 346 ALA F 353 -1 N ALA F 353 O THR F 356 LINK C15 HFL F 0 CD2 LEU F 136 1555 1555 2.06 SITE 1 AC1 10 GLY C 208 ASP C 231 LEU C 232 ASP C 251 SITE 2 AC1 10 MET C 252 PHE C 253 LYS C 265 TRP C 266 SITE 3 AC1 10 TRP C 271 HOH C1713 SITE 1 AC2 14 SER F 184 GLY F 208 ASP F 231 LEU F 232 SITE 2 AC2 14 GLY F 250 ASP F 251 MET F 252 PHE F 253 SITE 3 AC2 14 LYS F 265 TRP F 266 TRP F 271 HOH F1743 SITE 4 AC2 14 HOH F1766 HOH F1767 SITE 1 AC3 8 LEU F 136 ALA F 162 MET F 180 ASP F 270 SITE 2 AC3 8 MET F 320 HIS F 323 ASN F 324 HOH F1714 CRYST1 104.473 61.996 112.213 90.00 111.27 90.00 P 1 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009572 0.000000 0.003726 0.00000 SCALE2 0.000000 0.016130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009563 0.00000