data_1KZT # _entry.id 1KZT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KZT pdb_00001kzt 10.2210/pdb1kzt/pdb RCSB RCSB015516 ? ? WWPDB D_1000015516 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-08-28 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KZT _pdbx_database_status.recvd_initial_deposition_date 2002-02-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1kzs '1kzs is the Structure of Human Immunodeficiency Virus Type 1 Vpr(34-51) Peptide in Aqueous TFE Solution.' unspecified PDB 1kzv '1KZV is the Structure of human immunodeficiency virus type 1 Vpr(34-51) peptide in chloroform methanol.' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Engler, A.' 1 'Stangler, T.' 2 'Willbold, D.' 3 # _citation.id primary _citation.title 'Structure of human immunodeficiency virus type 1 Vpr(34-51) peptide in micelle containing aqueous solution.' _citation.journal_abbrev Eur.J.Biochem. _citation.journal_volume 269 _citation.page_first 3264 _citation.page_last 3269 _citation.year 2002 _citation.journal_id_ASTM EJBCAI _citation.country IX _citation.journal_id_ISSN 0014-2956 _citation.journal_id_CSD 0262 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12084067 _citation.pdbx_database_id_DOI 10.1046/j.1432-1033.2002.03005.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Engler, A.' 1 ? primary 'Stangler, T.' 2 ? primary 'Willbold, D.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Vpr PROTEIN' _entity.formula_weight 2271.578 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RESIDUES 34-51' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)FPRIWLHNLGQHIYETYG(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XFPRIWLHNLGQHIYETYGX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PHE n 1 3 PRO n 1 4 ARG n 1 5 ILE n 1 6 TRP n 1 7 LEU n 1 8 HIS n 1 9 ASN n 1 10 LEU n 1 11 GLY n 1 12 GLN n 1 13 HIS n 1 14 ILE n 1 15 TYR n 1 16 GLU n 1 17 THR n 1 18 TYR n 1 19 GLY n 1 20 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'THIS PEPTIDE WAS Chemically synthesized. IT IS NATURALLY FOUND IN human immunodeficiency virus type 1 (New York-5 isolate) (HIV-1).' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 33 33 ACE ACE A . n A 1 2 PHE 2 34 34 PHE PHE A . n A 1 3 PRO 3 35 35 PRO PRO A . n A 1 4 ARG 4 36 36 ARG ARG A . n A 1 5 ILE 5 37 37 ILE ILE A . n A 1 6 TRP 6 38 38 TRP TRP A . n A 1 7 LEU 7 39 39 LEU LEU A . n A 1 8 HIS 8 40 40 HIS HIS A . n A 1 9 ASN 9 41 41 ASN ASN A . n A 1 10 LEU 10 42 42 LEU LEU A . n A 1 11 GLY 11 43 43 GLY GLY A . n A 1 12 GLN 12 44 44 GLN GLN A . n A 1 13 HIS 13 45 45 HIS HIS A . n A 1 14 ILE 14 46 46 ILE ILE A . n A 1 15 TYR 15 47 47 TYR TYR A . n A 1 16 GLU 16 48 48 GLU GLU A . n A 1 17 THR 17 49 49 THR THR A . n A 1 18 TYR 18 50 50 TYR TYR A . n A 1 19 GLY 19 51 51 GLY GLY A . n A 1 20 NH2 20 52 51 NH2 GLY A . n # _exptl.entry_id 1KZT _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1KZT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1KZT _struct.title 'Structure of Human Immunodeficiency Virus Type 1 Vpr(34-51) Peptide in DPC Micelle Containing Aqueous Solution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KZT _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'HIV-1, Vpr, solution structure, dodecylphosphocholine, micelles, Viral protein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VPR_HV1N5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code FPRIWLHNLGQHIYETYG _struct_ref.pdbx_align_begin 34 _struct_ref.pdbx_db_accession P12520 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KZT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P12520 _struct_ref_seq.db_align_beg 34 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 51 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 34 _struct_ref_seq.pdbx_auth_seq_align_end 51 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ILE _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 5 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id TYR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 18 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ILE _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 37 _struct_conf.end_auth_comp_id TYR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 50 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PHE 2 N ? ? A ACE 33 A PHE 34 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale2 covale both ? A GLY 19 C ? ? ? 1_555 A NH2 20 N ? ? A GLY 51 A NH2 52 1_555 ? ? ? ? ? ? ? 1.306 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE A 1 ? PHE A 2 ? ACE A 33 ? 1_555 PHE A 34 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 2 NH2 A 20 ? GLY A 19 ? NH2 A 52 ? 1_555 GLY A 51 ? 1_555 . . GLY 12 NH2 None 'Terminal amidation' # _struct_site.id AC2 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NH2 _struct_site.pdbx_auth_seq_id 52 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE NH2 A 52' # _struct_site_gen.id 1 _struct_site_gen.site_id AC2 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id GLY _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 19 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id GLY _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 51 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _pdbx_entry_details.entry_id 1KZT _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 37 ? ? -59.73 -156.14 2 3 ILE A 37 ? ? -58.68 -162.90 3 6 LEU A 39 ? ? 69.11 -50.72 4 6 TYR A 50 ? ? -174.87 98.94 5 9 LEU A 39 ? ? 72.49 -44.72 6 9 THR A 49 ? ? -101.72 -73.52 7 11 ILE A 37 ? ? -60.61 -151.09 8 13 ARG A 36 ? ? 171.67 92.36 9 15 ILE A 37 ? ? -73.47 -131.24 10 16 ARG A 36 ? ? -162.67 85.22 11 16 THR A 49 ? ? 71.82 -54.12 12 18 ILE A 37 ? ? -68.66 -139.42 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 36 ? ? 0.125 'SIDE CHAIN' 2 2 ARG A 36 ? ? 0.130 'SIDE CHAIN' 3 3 ARG A 36 ? ? 0.309 'SIDE CHAIN' 4 4 ARG A 36 ? ? 0.318 'SIDE CHAIN' 5 5 ARG A 36 ? ? 0.099 'SIDE CHAIN' 6 6 ARG A 36 ? ? 0.228 'SIDE CHAIN' 7 7 ARG A 36 ? ? 0.113 'SIDE CHAIN' 8 8 ARG A 36 ? ? 0.306 'SIDE CHAIN' 9 9 ARG A 36 ? ? 0.310 'SIDE CHAIN' 10 10 ARG A 36 ? ? 0.315 'SIDE CHAIN' 11 11 ARG A 36 ? ? 0.299 'SIDE CHAIN' 12 12 ARG A 36 ? ? 0.317 'SIDE CHAIN' 13 13 ARG A 36 ? ? 0.315 'SIDE CHAIN' 14 14 ARG A 36 ? ? 0.312 'SIDE CHAIN' 15 15 ARG A 36 ? ? 0.287 'SIDE CHAIN' 16 16 ARG A 36 ? ? 0.160 'SIDE CHAIN' 17 17 ARG A 36 ? ? 0.271 'SIDE CHAIN' 18 18 ARG A 36 ? ? 0.211 'SIDE CHAIN' 19 19 ARG A 36 ? ? 0.192 'SIDE CHAIN' 20 20 ARG A 36 ? ? 0.308 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1KZT _pdbx_nmr_ensemble.conformers_calculated_total_number 97 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1KZT _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2mM Vpr(34-51); 100mM Dodecylphosphocholine d38; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type '2D NOESY' # _pdbx_nmr_refine.entry_id 1KZT _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'structures were calculated using floating chirality.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 3.851 'structure solution' Brunger 1 VNMR 5.3 collection Varian 2 NDEE ? 'data analysis' 'SpinUp Inc.' 3 X-PLOR 3.851 refinement Brunger 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ARG N N N N 8 ARG CA C N S 9 ARG C C N N 10 ARG O O N N 11 ARG CB C N N 12 ARG CG C N N 13 ARG CD C N N 14 ARG NE N N N 15 ARG CZ C N N 16 ARG NH1 N N N 17 ARG NH2 N N N 18 ARG OXT O N N 19 ARG H H N N 20 ARG H2 H N N 21 ARG HA H N N 22 ARG HB2 H N N 23 ARG HB3 H N N 24 ARG HG2 H N N 25 ARG HG3 H N N 26 ARG HD2 H N N 27 ARG HD3 H N N 28 ARG HE H N N 29 ARG HH11 H N N 30 ARG HH12 H N N 31 ARG HH21 H N N 32 ARG HH22 H N N 33 ARG HXT H N N 34 ASN N N N N 35 ASN CA C N S 36 ASN C C N N 37 ASN O O N N 38 ASN CB C N N 39 ASN CG C N N 40 ASN OD1 O N N 41 ASN ND2 N N N 42 ASN OXT O N N 43 ASN H H N N 44 ASN H2 H N N 45 ASN HA H N N 46 ASN HB2 H N N 47 ASN HB3 H N N 48 ASN HD21 H N N 49 ASN HD22 H N N 50 ASN HXT H N N 51 GLN N N N N 52 GLN CA C N S 53 GLN C C N N 54 GLN O O N N 55 GLN CB C N N 56 GLN CG C N N 57 GLN CD C N N 58 GLN OE1 O N N 59 GLN NE2 N N N 60 GLN OXT O N N 61 GLN H H N N 62 GLN H2 H N N 63 GLN HA H N N 64 GLN HB2 H N N 65 GLN HB3 H N N 66 GLN HG2 H N N 67 GLN HG3 H N N 68 GLN HE21 H N N 69 GLN HE22 H N N 70 GLN HXT H N N 71 GLU N N N N 72 GLU CA C N S 73 GLU C C N N 74 GLU O O N N 75 GLU CB C N N 76 GLU CG C N N 77 GLU CD C N N 78 GLU OE1 O N N 79 GLU OE2 O N N 80 GLU OXT O N N 81 GLU H H N N 82 GLU H2 H N N 83 GLU HA H N N 84 GLU HB2 H N N 85 GLU HB3 H N N 86 GLU HG2 H N N 87 GLU HG3 H N N 88 GLU HE2 H N N 89 GLU HXT H N N 90 GLY N N N N 91 GLY CA C N N 92 GLY C C N N 93 GLY O O N N 94 GLY OXT O N N 95 GLY H H N N 96 GLY H2 H N N 97 GLY HA2 H N N 98 GLY HA3 H N N 99 GLY HXT H N N 100 HIS N N N N 101 HIS CA C N S 102 HIS C C N N 103 HIS O O N N 104 HIS CB C N N 105 HIS CG C Y N 106 HIS ND1 N Y N 107 HIS CD2 C Y N 108 HIS CE1 C Y N 109 HIS NE2 N Y N 110 HIS OXT O N N 111 HIS H H N N 112 HIS H2 H N N 113 HIS HA H N N 114 HIS HB2 H N N 115 HIS HB3 H N N 116 HIS HD1 H N N 117 HIS HD2 H N N 118 HIS HE1 H N N 119 HIS HE2 H N N 120 HIS HXT H N N 121 ILE N N N N 122 ILE CA C N S 123 ILE C C N N 124 ILE O O N N 125 ILE CB C N S 126 ILE CG1 C N N 127 ILE CG2 C N N 128 ILE CD1 C N N 129 ILE OXT O N N 130 ILE H H N N 131 ILE H2 H N N 132 ILE HA H N N 133 ILE HB H N N 134 ILE HG12 H N N 135 ILE HG13 H N N 136 ILE HG21 H N N 137 ILE HG22 H N N 138 ILE HG23 H N N 139 ILE HD11 H N N 140 ILE HD12 H N N 141 ILE HD13 H N N 142 ILE HXT H N N 143 LEU N N N N 144 LEU CA C N S 145 LEU C C N N 146 LEU O O N N 147 LEU CB C N N 148 LEU CG C N N 149 LEU CD1 C N N 150 LEU CD2 C N N 151 LEU OXT O N N 152 LEU H H N N 153 LEU H2 H N N 154 LEU HA H N N 155 LEU HB2 H N N 156 LEU HB3 H N N 157 LEU HG H N N 158 LEU HD11 H N N 159 LEU HD12 H N N 160 LEU HD13 H N N 161 LEU HD21 H N N 162 LEU HD22 H N N 163 LEU HD23 H N N 164 LEU HXT H N N 165 NH2 N N N N 166 NH2 HN1 H N N 167 NH2 HN2 H N N 168 PHE N N N N 169 PHE CA C N S 170 PHE C C N N 171 PHE O O N N 172 PHE CB C N N 173 PHE CG C Y N 174 PHE CD1 C Y N 175 PHE CD2 C Y N 176 PHE CE1 C Y N 177 PHE CE2 C Y N 178 PHE CZ C Y N 179 PHE OXT O N N 180 PHE H H N N 181 PHE H2 H N N 182 PHE HA H N N 183 PHE HB2 H N N 184 PHE HB3 H N N 185 PHE HD1 H N N 186 PHE HD2 H N N 187 PHE HE1 H N N 188 PHE HE2 H N N 189 PHE HZ H N N 190 PHE HXT H N N 191 PRO N N N N 192 PRO CA C N S 193 PRO C C N N 194 PRO O O N N 195 PRO CB C N N 196 PRO CG C N N 197 PRO CD C N N 198 PRO OXT O N N 199 PRO H H N N 200 PRO HA H N N 201 PRO HB2 H N N 202 PRO HB3 H N N 203 PRO HG2 H N N 204 PRO HG3 H N N 205 PRO HD2 H N N 206 PRO HD3 H N N 207 PRO HXT H N N 208 THR N N N N 209 THR CA C N S 210 THR C C N N 211 THR O O N N 212 THR CB C N R 213 THR OG1 O N N 214 THR CG2 C N N 215 THR OXT O N N 216 THR H H N N 217 THR H2 H N N 218 THR HA H N N 219 THR HB H N N 220 THR HG1 H N N 221 THR HG21 H N N 222 THR HG22 H N N 223 THR HG23 H N N 224 THR HXT H N N 225 TRP N N N N 226 TRP CA C N S 227 TRP C C N N 228 TRP O O N N 229 TRP CB C N N 230 TRP CG C Y N 231 TRP CD1 C Y N 232 TRP CD2 C Y N 233 TRP NE1 N Y N 234 TRP CE2 C Y N 235 TRP CE3 C Y N 236 TRP CZ2 C Y N 237 TRP CZ3 C Y N 238 TRP CH2 C Y N 239 TRP OXT O N N 240 TRP H H N N 241 TRP H2 H N N 242 TRP HA H N N 243 TRP HB2 H N N 244 TRP HB3 H N N 245 TRP HD1 H N N 246 TRP HE1 H N N 247 TRP HE3 H N N 248 TRP HZ2 H N N 249 TRP HZ3 H N N 250 TRP HH2 H N N 251 TRP HXT H N N 252 TYR N N N N 253 TYR CA C N S 254 TYR C C N N 255 TYR O O N N 256 TYR CB C N N 257 TYR CG C Y N 258 TYR CD1 C Y N 259 TYR CD2 C Y N 260 TYR CE1 C Y N 261 TYR CE2 C Y N 262 TYR CZ C Y N 263 TYR OH O N N 264 TYR OXT O N N 265 TYR H H N N 266 TYR H2 H N N 267 TYR HA H N N 268 TYR HB2 H N N 269 TYR HB3 H N N 270 TYR HD1 H N N 271 TYR HD2 H N N 272 TYR HE1 H N N 273 TYR HE2 H N N 274 TYR HH H N N 275 TYR HXT H N N 276 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ARG N CA sing N N 7 ARG N H sing N N 8 ARG N H2 sing N N 9 ARG CA C sing N N 10 ARG CA CB sing N N 11 ARG CA HA sing N N 12 ARG C O doub N N 13 ARG C OXT sing N N 14 ARG CB CG sing N N 15 ARG CB HB2 sing N N 16 ARG CB HB3 sing N N 17 ARG CG CD sing N N 18 ARG CG HG2 sing N N 19 ARG CG HG3 sing N N 20 ARG CD NE sing N N 21 ARG CD HD2 sing N N 22 ARG CD HD3 sing N N 23 ARG NE CZ sing N N 24 ARG NE HE sing N N 25 ARG CZ NH1 sing N N 26 ARG CZ NH2 doub N N 27 ARG NH1 HH11 sing N N 28 ARG NH1 HH12 sing N N 29 ARG NH2 HH21 sing N N 30 ARG NH2 HH22 sing N N 31 ARG OXT HXT sing N N 32 ASN N CA sing N N 33 ASN N H sing N N 34 ASN N H2 sing N N 35 ASN CA C sing N N 36 ASN CA CB sing N N 37 ASN CA HA sing N N 38 ASN C O doub N N 39 ASN C OXT sing N N 40 ASN CB CG sing N N 41 ASN CB HB2 sing N N 42 ASN CB HB3 sing N N 43 ASN CG OD1 doub N N 44 ASN CG ND2 sing N N 45 ASN ND2 HD21 sing N N 46 ASN ND2 HD22 sing N N 47 ASN OXT HXT sing N N 48 GLN N CA sing N N 49 GLN N H sing N N 50 GLN N H2 sing N N 51 GLN CA C sing N N 52 GLN CA CB sing N N 53 GLN CA HA sing N N 54 GLN C O doub N N 55 GLN C OXT sing N N 56 GLN CB CG sing N N 57 GLN CB HB2 sing N N 58 GLN CB HB3 sing N N 59 GLN CG CD sing N N 60 GLN CG HG2 sing N N 61 GLN CG HG3 sing N N 62 GLN CD OE1 doub N N 63 GLN CD NE2 sing N N 64 GLN NE2 HE21 sing N N 65 GLN NE2 HE22 sing N N 66 GLN OXT HXT sing N N 67 GLU N CA sing N N 68 GLU N H sing N N 69 GLU N H2 sing N N 70 GLU CA C sing N N 71 GLU CA CB sing N N 72 GLU CA HA sing N N 73 GLU C O doub N N 74 GLU C OXT sing N N 75 GLU CB CG sing N N 76 GLU CB HB2 sing N N 77 GLU CB HB3 sing N N 78 GLU CG CD sing N N 79 GLU CG HG2 sing N N 80 GLU CG HG3 sing N N 81 GLU CD OE1 doub N N 82 GLU CD OE2 sing N N 83 GLU OE2 HE2 sing N N 84 GLU OXT HXT sing N N 85 GLY N CA sing N N 86 GLY N H sing N N 87 GLY N H2 sing N N 88 GLY CA C sing N N 89 GLY CA HA2 sing N N 90 GLY CA HA3 sing N N 91 GLY C O doub N N 92 GLY C OXT sing N N 93 GLY OXT HXT sing N N 94 HIS N CA sing N N 95 HIS N H sing N N 96 HIS N H2 sing N N 97 HIS CA C sing N N 98 HIS CA CB sing N N 99 HIS CA HA sing N N 100 HIS C O doub N N 101 HIS C OXT sing N N 102 HIS CB CG sing N N 103 HIS CB HB2 sing N N 104 HIS CB HB3 sing N N 105 HIS CG ND1 sing Y N 106 HIS CG CD2 doub Y N 107 HIS ND1 CE1 doub Y N 108 HIS ND1 HD1 sing N N 109 HIS CD2 NE2 sing Y N 110 HIS CD2 HD2 sing N N 111 HIS CE1 NE2 sing Y N 112 HIS CE1 HE1 sing N N 113 HIS NE2 HE2 sing N N 114 HIS OXT HXT sing N N 115 ILE N CA sing N N 116 ILE N H sing N N 117 ILE N H2 sing N N 118 ILE CA C sing N N 119 ILE CA CB sing N N 120 ILE CA HA sing N N 121 ILE C O doub N N 122 ILE C OXT sing N N 123 ILE CB CG1 sing N N 124 ILE CB CG2 sing N N 125 ILE CB HB sing N N 126 ILE CG1 CD1 sing N N 127 ILE CG1 HG12 sing N N 128 ILE CG1 HG13 sing N N 129 ILE CG2 HG21 sing N N 130 ILE CG2 HG22 sing N N 131 ILE CG2 HG23 sing N N 132 ILE CD1 HD11 sing N N 133 ILE CD1 HD12 sing N N 134 ILE CD1 HD13 sing N N 135 ILE OXT HXT sing N N 136 LEU N CA sing N N 137 LEU N H sing N N 138 LEU N H2 sing N N 139 LEU CA C sing N N 140 LEU CA CB sing N N 141 LEU CA HA sing N N 142 LEU C O doub N N 143 LEU C OXT sing N N 144 LEU CB CG sing N N 145 LEU CB HB2 sing N N 146 LEU CB HB3 sing N N 147 LEU CG CD1 sing N N 148 LEU CG CD2 sing N N 149 LEU CG HG sing N N 150 LEU CD1 HD11 sing N N 151 LEU CD1 HD12 sing N N 152 LEU CD1 HD13 sing N N 153 LEU CD2 HD21 sing N N 154 LEU CD2 HD22 sing N N 155 LEU CD2 HD23 sing N N 156 LEU OXT HXT sing N N 157 NH2 N HN1 sing N N 158 NH2 N HN2 sing N N 159 PHE N CA sing N N 160 PHE N H sing N N 161 PHE N H2 sing N N 162 PHE CA C sing N N 163 PHE CA CB sing N N 164 PHE CA HA sing N N 165 PHE C O doub N N 166 PHE C OXT sing N N 167 PHE CB CG sing N N 168 PHE CB HB2 sing N N 169 PHE CB HB3 sing N N 170 PHE CG CD1 doub Y N 171 PHE CG CD2 sing Y N 172 PHE CD1 CE1 sing Y N 173 PHE CD1 HD1 sing N N 174 PHE CD2 CE2 doub Y N 175 PHE CD2 HD2 sing N N 176 PHE CE1 CZ doub Y N 177 PHE CE1 HE1 sing N N 178 PHE CE2 CZ sing Y N 179 PHE CE2 HE2 sing N N 180 PHE CZ HZ sing N N 181 PHE OXT HXT sing N N 182 PRO N CA sing N N 183 PRO N CD sing N N 184 PRO N H sing N N 185 PRO CA C sing N N 186 PRO CA CB sing N N 187 PRO CA HA sing N N 188 PRO C O doub N N 189 PRO C OXT sing N N 190 PRO CB CG sing N N 191 PRO CB HB2 sing N N 192 PRO CB HB3 sing N N 193 PRO CG CD sing N N 194 PRO CG HG2 sing N N 195 PRO CG HG3 sing N N 196 PRO CD HD2 sing N N 197 PRO CD HD3 sing N N 198 PRO OXT HXT sing N N 199 THR N CA sing N N 200 THR N H sing N N 201 THR N H2 sing N N 202 THR CA C sing N N 203 THR CA CB sing N N 204 THR CA HA sing N N 205 THR C O doub N N 206 THR C OXT sing N N 207 THR CB OG1 sing N N 208 THR CB CG2 sing N N 209 THR CB HB sing N N 210 THR OG1 HG1 sing N N 211 THR CG2 HG21 sing N N 212 THR CG2 HG22 sing N N 213 THR CG2 HG23 sing N N 214 THR OXT HXT sing N N 215 TRP N CA sing N N 216 TRP N H sing N N 217 TRP N H2 sing N N 218 TRP CA C sing N N 219 TRP CA CB sing N N 220 TRP CA HA sing N N 221 TRP C O doub N N 222 TRP C OXT sing N N 223 TRP CB CG sing N N 224 TRP CB HB2 sing N N 225 TRP CB HB3 sing N N 226 TRP CG CD1 doub Y N 227 TRP CG CD2 sing Y N 228 TRP CD1 NE1 sing Y N 229 TRP CD1 HD1 sing N N 230 TRP CD2 CE2 doub Y N 231 TRP CD2 CE3 sing Y N 232 TRP NE1 CE2 sing Y N 233 TRP NE1 HE1 sing N N 234 TRP CE2 CZ2 sing Y N 235 TRP CE3 CZ3 doub Y N 236 TRP CE3 HE3 sing N N 237 TRP CZ2 CH2 doub Y N 238 TRP CZ2 HZ2 sing N N 239 TRP CZ3 CH2 sing Y N 240 TRP CZ3 HZ3 sing N N 241 TRP CH2 HH2 sing N N 242 TRP OXT HXT sing N N 243 TYR N CA sing N N 244 TYR N H sing N N 245 TYR N H2 sing N N 246 TYR CA C sing N N 247 TYR CA CB sing N N 248 TYR CA HA sing N N 249 TYR C O doub N N 250 TYR C OXT sing N N 251 TYR CB CG sing N N 252 TYR CB HB2 sing N N 253 TYR CB HB3 sing N N 254 TYR CG CD1 doub Y N 255 TYR CG CD2 sing Y N 256 TYR CD1 CE1 sing Y N 257 TYR CD1 HD1 sing N N 258 TYR CD2 CE2 doub Y N 259 TYR CD2 HD2 sing N N 260 TYR CE1 CZ doub Y N 261 TYR CE1 HE1 sing N N 262 TYR CE2 CZ sing Y N 263 TYR CE2 HE2 sing N N 264 TYR CZ OH sing N N 265 TYR OH HH sing N N 266 TYR OXT HXT sing N N 267 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 # _atom_sites.entry_id 1KZT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_