HEADER DNA BINDING PROTEIN, PROTEIN BINDING 08-FEB-02 1KZY TITLE CRYSTAL STRUCTURE OF THE 53BP1 BRCT REGION COMPLEXED TO TUMOR TITLE 2 SUPPRESSOR P53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING CORE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUMOR SUPPRESSOR P53-BINDING PROTEIN 1; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: TANDEM-BRCT DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: 53BP1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS TANDEM-BRCT AND LINKER COMPLEXED WITH NON-BRCT PROTEIN, THREE-HELIX KEYWDS 2 BUNDLE, PARALLEL BETA SHEET, DNA BINDING PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR W.S.JOO,P.D.JEFFREY,S.B.CANTOR,M.S.FINNIN,D.M.LIVINGSTON, AUTHOR 2 N.P.PAVLETICH REVDAT 3 16-OCT-24 1KZY 1 REMARK LINK REVDAT 2 24-FEB-09 1KZY 1 VERSN REVDAT 1 20-MAR-02 1KZY 0 JRNL AUTH W.S.JOO,P.D.JEFFREY,S.B.CANTOR,M.S.FINNIN,D.M.LIVINGSTON, JRNL AUTH 2 N.P.PAVLETICH JRNL TITL STRUCTURE OF THE 53BP1 BRCT REGION BOUND TO P53 AND ITS JRNL TITL 2 COMPARISON TO THE BRCA1 BRCT STRUCTURE. JRNL REF GENES DEV. V. 16 583 2002 JRNL REFN ISSN 0890-9369 JRNL PMID 11877378 JRNL DOI 10.1101/GAD.959202 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1469 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2832,1.2817,1.2622 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30624 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 16.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM CITRATE, AMMONIUM REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.56600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.84000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.48800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.84000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.56600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.48800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE BIOLOGICAL UNIT IS TENTATIVELY DEFINED AS A HETERODIMER. REMARK 300 HOWEVER, THE FUNCTIONAL BIOLOGICAL UNIT REMAINS TO BE REMARK 300 DETERMINED. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 1741 REMARK 465 SER C 1742 REMARK 465 ASP C 1743 REMARK 465 LYS C 1744 REMARK 465 LEU C 1745 REMARK 465 ALA C 1746 REMARK 465 SER C 1747 REMARK 465 ARG C 1748 REMARK 465 SER C 1749 REMARK 465 LYS C 1750 REMARK 465 LEU C 1751 REMARK 465 PRO C 1752 REMARK 465 ASP C 1753 REMARK 465 GLY C 1754 REMARK 465 PRO C 1755 REMARK 465 THR C 1756 REMARK 465 GLY C 1757 REMARK 465 SER C 1758 REMARK 465 SER C 1759 REMARK 465 GLU C 1760 REMARK 465 GLU C 1761 REMARK 465 GLU C 1762 REMARK 465 GLU C 1763 REMARK 465 GLU C 1764 REMARK 465 PHE C 1765 REMARK 465 LEU C 1766 REMARK 465 GLU C 1767 REMARK 465 THR D 1741 REMARK 465 SER D 1742 REMARK 465 ASP D 1743 REMARK 465 LYS D 1744 REMARK 465 LEU D 1745 REMARK 465 ALA D 1746 REMARK 465 SER D 1747 REMARK 465 ARG D 1748 REMARK 465 SER D 1749 REMARK 465 LYS D 1750 REMARK 465 LEU D 1751 REMARK 465 PRO D 1752 REMARK 465 ASP D 1753 REMARK 465 GLY D 1754 REMARK 465 PRO D 1755 REMARK 465 THR D 1756 REMARK 465 GLY D 1757 REMARK 465 SER D 1758 REMARK 465 SER D 1759 REMARK 465 GLU D 1760 REMARK 465 GLU D 1761 REMARK 465 GLU D 1762 REMARK 465 GLU D 1763 REMARK 465 GLU D 1764 REMARK 465 PHE D 1765 REMARK 465 LEU D 1766 REMARK 465 GLU D 1767 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA C 1794 O HOH C 207 2.14 REMARK 500 NE ARG B 202 O HOH B 337 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 188 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 116 2.95 -157.00 REMARK 500 THR A 118 34.55 -141.11 REMARK 500 ALA A 138 6.73 56.79 REMARK 500 SER A 183 2.76 -62.27 REMARK 500 ASP A 186 26.23 -77.19 REMARK 500 ASP A 208 104.47 11.11 REMARK 500 PHE A 212 9.95 84.61 REMARK 500 CYS A 242 106.70 -42.74 REMARK 500 ARG A 248 -14.98 83.37 REMARK 500 CYS A 277 78.93 -117.75 REMARK 500 ASN A 288 1.80 -54.24 REMARK 500 SER B 116 35.72 -153.04 REMARK 500 THR B 118 31.33 -141.67 REMARK 500 CYS B 124 117.14 -164.10 REMARK 500 ALA B 138 5.62 50.92 REMARK 500 ASP B 184 5.24 -60.07 REMARK 500 SER B 185 97.64 -66.28 REMARK 500 ASP B 186 30.71 -67.68 REMARK 500 ASP B 208 112.15 18.30 REMARK 500 PHE B 212 0.90 84.18 REMARK 500 PRO B 223 172.01 -58.48 REMARK 500 ARG B 248 -9.61 72.50 REMARK 500 ASN B 288 0.05 -66.97 REMARK 500 ALA C1739 -165.06 -78.18 REMARK 500 ARG C1858 165.83 175.40 REMARK 500 GLN C1881 -74.06 -61.23 REMARK 500 ASN C1883 -35.81 95.76 REMARK 500 PHE C1884 -79.08 -127.06 REMARK 500 SER C1905 -92.41 -32.52 REMARK 500 ALA C1907 55.48 -62.56 REMARK 500 LYS C1910 67.06 -51.17 REMARK 500 ASP C1911 52.66 -110.43 REMARK 500 LYS C1964 -9.73 -56.52 REMARK 500 SER C1971 -96.30 -20.34 REMARK 500 ARG D1719 -53.81 -29.76 REMARK 500 LEU D1724 -75.50 63.89 REMARK 500 PRO D1769 104.61 -51.52 REMARK 500 PRO D1770 129.32 -25.21 REMARK 500 GLN D1870 123.20 -38.84 REMARK 500 ASN D1871 18.67 52.66 REMARK 500 ASN D1883 -25.82 96.22 REMARK 500 PHE D1884 -74.91 -135.90 REMARK 500 SER D1905 -93.17 -29.96 REMARK 500 ALA D1907 65.65 -59.15 REMARK 500 HIS D1908 130.34 -176.82 REMARK 500 LYS D1910 68.30 -63.05 REMARK 500 ASP D1911 52.44 -110.76 REMARK 500 LYS D1964 -6.42 -56.54 REMARK 500 SER D1971 -98.90 -4.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 107 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 102.4 REMARK 620 3 CYS A 238 SG 115.2 101.9 REMARK 620 4 CYS A 242 SG 114.9 101.6 117.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 103.4 REMARK 620 3 CYS B 238 SG 113.4 108.7 REMARK 620 4 CYS B 242 SG 115.8 98.8 114.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 DBREF 1KZY A 95 289 UNP P04637 P53_HUMAN 95 289 DBREF 1KZY B 95 289 UNP P04637 P53_HUMAN 95 289 DBREF 1KZY C 1714 1972 UNP Q12888 TP53B_HUMAN 1714 1972 DBREF 1KZY D 1714 1972 UNP Q12888 TP53B_HUMAN 1714 1972 SEQRES 1 A 195 SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR SEQRES 2 A 195 GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SEQRES 3 A 195 SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET SEQRES 4 A 195 PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP SEQRES 5 A 195 VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA SEQRES 6 A 195 MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL SEQRES 7 A 195 VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER SEQRES 8 A 195 ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU SEQRES 9 A 195 GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR SEQRES 10 A 195 PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU SEQRES 11 A 195 VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET SEQRES 12 A 195 CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO SEQRES 13 A 195 ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN SEQRES 14 A 195 LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA SEQRES 15 A 195 CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 B 195 SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR SEQRES 2 B 195 GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SEQRES 3 B 195 SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET SEQRES 4 B 195 PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP SEQRES 5 B 195 VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA SEQRES 6 B 195 MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL SEQRES 7 B 195 VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER SEQRES 8 B 195 ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU SEQRES 9 B 195 GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR SEQRES 10 B 195 PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU SEQRES 11 B 195 VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET SEQRES 12 B 195 CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO SEQRES 13 B 195 ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN SEQRES 14 B 195 LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA SEQRES 15 B 195 CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 C 259 ALA LEU GLU GLU GLN ARG GLY PRO LEU PRO LEU ASN LYS SEQRES 2 C 259 THR LEU PHE LEU GLY TYR ALA PHE LEU LEU THR MET ALA SEQRES 3 C 259 THR THR SER ASP LYS LEU ALA SER ARG SER LYS LEU PRO SEQRES 4 C 259 ASP GLY PRO THR GLY SER SER GLU GLU GLU GLU GLU PHE SEQRES 5 C 259 LEU GLU ILE PRO PRO PHE ASN LYS GLN TYR THR GLU SER SEQRES 6 C 259 GLN LEU ARG ALA GLY ALA GLY TYR ILE LEU GLU ASP PHE SEQRES 7 C 259 ASN GLU ALA GLN CYS ASN THR ALA TYR GLN CYS LEU LEU SEQRES 8 C 259 ILE ALA ASP GLN HIS CYS ARG THR ARG LYS TYR PHE LEU SEQRES 9 C 259 CYS LEU ALA SER GLY ILE PRO CYS VAL SER HIS VAL TRP SEQRES 10 C 259 VAL HIS ASP SER CYS HIS ALA ASN GLN LEU GLN ASN TYR SEQRES 11 C 259 ARG ASN TYR LEU LEU PRO ALA GLY TYR SER LEU GLU GLU SEQRES 12 C 259 GLN ARG ILE LEU ASP TRP GLN PRO ARG GLU ASN PRO PHE SEQRES 13 C 259 GLN ASN LEU LYS VAL LEU LEU VAL SER ASP GLN GLN GLN SEQRES 14 C 259 ASN PHE LEU GLU LEU TRP SER GLU ILE LEU MET THR GLY SEQRES 15 C 259 GLY ALA ALA SER VAL LYS GLN HIS HIS SER SER ALA HIS SEQRES 16 C 259 ASN LYS ASP ILE ALA LEU GLY VAL PHE ASP VAL VAL VAL SEQRES 17 C 259 THR ASP PRO SER CYS PRO ALA SER VAL LEU LYS CYS ALA SEQRES 18 C 259 GLU ALA LEU GLN LEU PRO VAL VAL SER GLN GLU TRP VAL SEQRES 19 C 259 ILE GLN CYS LEU ILE VAL GLY GLU ARG ILE GLY PHE LYS SEQRES 20 C 259 GLN HIS PRO LYS TYR LYS HIS ASP TYR VAL SER HIS SEQRES 1 D 259 ALA LEU GLU GLU GLN ARG GLY PRO LEU PRO LEU ASN LYS SEQRES 2 D 259 THR LEU PHE LEU GLY TYR ALA PHE LEU LEU THR MET ALA SEQRES 3 D 259 THR THR SER ASP LYS LEU ALA SER ARG SER LYS LEU PRO SEQRES 4 D 259 ASP GLY PRO THR GLY SER SER GLU GLU GLU GLU GLU PHE SEQRES 5 D 259 LEU GLU ILE PRO PRO PHE ASN LYS GLN TYR THR GLU SER SEQRES 6 D 259 GLN LEU ARG ALA GLY ALA GLY TYR ILE LEU GLU ASP PHE SEQRES 7 D 259 ASN GLU ALA GLN CYS ASN THR ALA TYR GLN CYS LEU LEU SEQRES 8 D 259 ILE ALA ASP GLN HIS CYS ARG THR ARG LYS TYR PHE LEU SEQRES 9 D 259 CYS LEU ALA SER GLY ILE PRO CYS VAL SER HIS VAL TRP SEQRES 10 D 259 VAL HIS ASP SER CYS HIS ALA ASN GLN LEU GLN ASN TYR SEQRES 11 D 259 ARG ASN TYR LEU LEU PRO ALA GLY TYR SER LEU GLU GLU SEQRES 12 D 259 GLN ARG ILE LEU ASP TRP GLN PRO ARG GLU ASN PRO PHE SEQRES 13 D 259 GLN ASN LEU LYS VAL LEU LEU VAL SER ASP GLN GLN GLN SEQRES 14 D 259 ASN PHE LEU GLU LEU TRP SER GLU ILE LEU MET THR GLY SEQRES 15 D 259 GLY ALA ALA SER VAL LYS GLN HIS HIS SER SER ALA HIS SEQRES 16 D 259 ASN LYS ASP ILE ALA LEU GLY VAL PHE ASP VAL VAL VAL SEQRES 17 D 259 THR ASP PRO SER CYS PRO ALA SER VAL LEU LYS CYS ALA SEQRES 18 D 259 GLU ALA LEU GLN LEU PRO VAL VAL SER GLN GLU TRP VAL SEQRES 19 D 259 ILE GLN CYS LEU ILE VAL GLY GLU ARG ILE GLY PHE LYS SEQRES 20 D 259 GLN HIS PRO LYS TYR LYS HIS ASP TYR VAL SER HIS HET ZN A 1 1 HET ZN B 1 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *216(H2 O) HELIX 1 1 CYS A 176 ARG A 181 1 6 HELIX 2 2 CYS A 277 ASN A 288 1 12 HELIX 3 3 GLN B 165 MET B 169 5 5 HELIX 4 4 CYS B 176 ARG B 181 1 6 HELIX 5 5 CYS B 277 ASN B 288 1 12 HELIX 6 6 ALA C 1714 GLY C 1720 1 7 HELIX 7 7 ASN C 1772 ALA C 1782 1 11 HELIX 8 8 THR C 1812 GLY C 1822 1 11 HELIX 9 9 HIS C 1828 ASN C 1838 1 11 HELIX 10 10 ASN C 1842 TYR C 1846 5 5 HELIX 11 11 PHE C 1884 GLY C 1895 1 12 HELIX 12 12 ALA C 1913 PHE C 1917 5 5 HELIX 13 13 PRO C 1927 GLN C 1938 1 12 HELIX 14 14 SER C 1943 GLY C 1954 1 12 HELIX 15 15 HIS C 1962 LYS C 1966 5 5 HELIX 16 16 LEU D 1715 GLY D 1720 1 6 HELIX 17 17 ASN D 1772 GLY D 1783 1 12 HELIX 18 18 ASN D 1792 ALA D 1799 1 8 HELIX 19 19 THR D 1812 GLY D 1822 1 11 HELIX 20 20 HIS D 1828 ASN D 1838 1 11 HELIX 21 21 ASN D 1842 TYR D 1846 5 5 HELIX 22 22 PHE D 1884 GLY D 1895 1 12 HELIX 23 23 PRO D 1927 LEU D 1937 1 11 HELIX 24 24 SER D 1943 GLY D 1954 1 12 HELIX 25 25 HIS D 1962 LYS D 1966 5 5 SHEET 1 A 4 ARG A 110 PHE A 113 0 SHEET 2 A 4 THR A 140 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 A 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 A 4 ILE A 195 GLU A 198 -1 N ARG A 196 O ASN A 235 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 O PHE A 134 N THR A 125 SHEET 3 B 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N LEU A 257 O GLY A 266 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N MET A 160 O ILE A 254 SHEET 6 B 7 SER A 215 PRO A 219 -1 O VAL A 218 N VAL A 157 SHEET 7 B 7 GLU A 204 LEU A 206 -1 N GLU A 204 O VAL A 217 SHEET 1 C 4 ARG B 110 GLY B 112 0 SHEET 2 C 4 CYS B 141 TRP B 146 -1 O GLN B 144 N GLY B 112 SHEET 3 C 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 C 4 ILE B 195 GLU B 198 -1 N ARG B 196 O ASN B 235 SHEET 1 D 7 CYS B 124 SER B 127 0 SHEET 2 D 7 LYS B 132 CYS B 135 -1 O PHE B 134 N THR B 125 SHEET 3 D 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 D 7 ILE B 251 GLU B 258 -1 N LEU B 257 O GLY B 266 SHEET 5 D 7 ARG B 156 TYR B 163 -1 N MET B 160 O ILE B 254 SHEET 6 D 7 SER B 215 PRO B 219 -1 O VAL B 216 N ALA B 159 SHEET 7 D 7 GLU B 204 LEU B 206 -1 N GLU B 204 O VAL B 217 SHEET 1 E 4 TYR C1786 ILE C1787 0 SHEET 2 E 4 TYR C1732 LEU C1736 1 N PHE C1734 O TYR C1786 SHEET 3 E 4 GLN C1801 ALA C1806 1 O ILE C1805 N LEU C1735 SHEET 4 E 4 CYS C1825 SER C1827 1 O VAL C1826 N LEU C1804 SHEET 1 F 2 GLY C1851 SER C1853 0 SHEET 2 F 2 ARG C1858 LEU C1860 -1 O LEU C1860 N GLY C1851 SHEET 1 G 4 SER C1899 HIS C1904 0 SHEET 2 G 4 LYS C1873 SER C1878 1 N VAL C1874 O SER C1899 SHEET 3 G 4 VAL C1919 THR C1922 1 O VAL C1921 N LEU C1875 SHEET 4 G 4 VAL C1941 VAL C1942 1 O VAL C1942 N VAL C1920 SHEET 1 H 4 TYR D1786 ILE D1787 0 SHEET 2 H 4 TYR D1732 LEU D1736 1 N PHE D1734 O TYR D1786 SHEET 3 H 4 GLN D1801 ALA D1806 1 O ILE D1805 N LEU D1735 SHEET 4 H 4 CYS D1825 SER D1827 1 O VAL D1826 N LEU D1804 SHEET 1 I 2 GLY D1851 SER D1853 0 SHEET 2 I 2 ARG D1858 LEU D1860 -1 O LEU D1860 N GLY D1851 SHEET 1 J 4 SER D1899 HIS D1904 0 SHEET 2 J 4 LYS D1873 SER D1878 1 N LEU D1876 O LYS D1901 SHEET 3 J 4 VAL D1919 THR D1922 1 O VAL D1921 N LEU D1875 SHEET 4 J 4 VAL D1941 VAL D1942 1 O VAL D1942 N VAL D1920 SSBOND 1 CYS C 1796 CYS C 1802 1555 1555 2.62 SSBOND 2 CYS D 1796 CYS D 1802 1555 1555 2.47 LINK ZN ZN A 1 SG CYS A 176 1555 1555 2.22 LINK ZN ZN A 1 ND1 HIS A 179 1555 1555 2.23 LINK ZN ZN A 1 SG CYS A 238 1555 1555 2.55 LINK ZN ZN A 1 SG CYS A 242 1555 1555 2.45 LINK ZN ZN B 1 SG CYS B 176 1555 1555 2.27 LINK ZN ZN B 1 ND1 HIS B 179 1555 1555 2.12 LINK ZN ZN B 1 SG CYS B 238 1555 1555 2.33 LINK ZN ZN B 1 SG CYS B 242 1555 1555 2.52 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 CRYST1 73.132 94.976 133.680 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007481 0.00000 CONECT 636 6773 CONECT 660 6773 CONECT 1138 6773 CONECT 1164 6773 CONECT 2167 6774 CONECT 2191 6774 CONECT 2669 6774 CONECT 2695 6774 CONECT 3505 3552 CONECT 3552 3505 CONECT 5360 5407 CONECT 5407 5360 CONECT 6773 636 660 1138 1164 CONECT 6774 2167 2191 2669 2695 MASTER 414 0 2 25 42 0 2 6 6986 4 14 70 END