HEADER IMMUNE SYSTEM 14-FEB-02 1L0X TITLE TCR BETA CHAIN COMPLEXED WITH STREPTOCOCCAL SUPERANTIGEN SPEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14.3.D T CELL RECEPTOR BETA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EXOTOXIN TYPE A; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: SCARLET FEVER TOXIN, ERYTHROGENIC TOXIN, SPE A; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: J558L; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 11 ORGANISM_TAXID: 1314; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TCR, SUPERANTIGEN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,E.J.SUNDBERG,R.A.MARIUZZA REVDAT 8 16-AUG-23 1L0X 1 REMARK REVDAT 7 27-OCT-21 1L0X 1 SEQADV REVDAT 6 21-JUL-21 1L0X 1 REMARK REVDAT 5 18-SEP-13 1L0X 1 REMARK REVDAT 4 13-JUL-11 1L0X 1 VERSN REVDAT 3 24-FEB-09 1L0X 1 VERSN REVDAT 2 17-MAY-05 1L0X 1 JRNL REMARK SCALE1 SCALE2 REVDAT 1 03-APR-02 1L0X 0 JRNL AUTH E.J.SUNDBERG,H.LI,A.S.LLERA,J.K.MCCORMICK,J.TORMO, JRNL AUTH 2 P.M.SCHLIEVERT,K.KARJALAINEN,R.A.MARIUZZA JRNL TITL STRUCTURES OF TWO STREPTOCOCCAL SUPERANTIGENS BOUND TO TCR JRNL TITL 2 BETA CHAINS REVEAL DIVERSITY IN THE ARCHITECTURE OF T CELL JRNL TITL 3 SIGNALING COMPLEXES. JRNL REF STRUCTURE V. 10 687 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12015151 JRNL DOI 10.1016/S0969-2126(02)00759-1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 26924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1326 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.340 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.990 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : 0.12100 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : 0.37300 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1BEC AND 1B1Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG8000, 0.2M MGCL2, 0.1M TRIS, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.62500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 245 REMARK 465 ASP A 246 REMARK 465 ALA C 245 REMARK 465 ASP C 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 SER A 133 CB OG REMARK 470 LYS A 134 CB CG CD CE NZ REMARK 470 ALA A 135 CB REMARK 470 GLU A 136 CB CG CD OE1 OE2 REMARK 470 ASN A 139 CB CG OD1 ND2 REMARK 470 LYS A 140 CB CG CD CE NZ REMARK 470 GLN A 141 CB CG CD OE1 NE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 TYR A 179 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 PRO A 226 CB CG CD REMARK 470 SER A 229 CB OG REMARK 470 GLN B 2 CB CG CD OE1 NE2 REMARK 470 GLN B 8 CG CD OE1 NE2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 TYR B 88 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 91 CB CG CD OE1 OE2 REMARK 470 ASN B 92 CB CG OD1 ND2 REMARK 470 ALA B 93 CB REMARK 470 GLU B 112 CB CG CD OE1 OE2 REMARK 470 ILE B 113 CG1 CG2 CD1 REMARK 470 VAL B 118 CG1 CG2 REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 ASN B 178 CG OD1 ND2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 117 CG CD OE1 OE2 REMARK 470 LYS C 134 CB CG CD CE NZ REMARK 470 GLU C 136 CB CG CD OE1 OE2 REMARK 470 ILE C 137 CB CG1 CG2 CD1 REMARK 470 ALA C 138 CB REMARK 470 ASN C 139 CB CG OD1 ND2 REMARK 470 LYS C 140 CB CG CD CE NZ REMARK 470 LYS C 142 CG CD CE NZ REMARK 470 LYS C 166 CG CD CE NZ REMARK 470 SER C 170 CB OG REMARK 470 TYR C 179 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN C 186 CG OD1 ND2 REMARK 470 ARG C 207 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 221 CB CG CD OE1 OE2 REMARK 470 GLU C 222 CG CD OE1 OE2 REMARK 470 LYS C 224 CB CG CD CE NZ REMARK 470 GLU C 227 CB CG CD OE1 OE2 REMARK 470 GLN D 2 CB CG CD OE1 NE2 REMARK 470 LYS D 36 CD CE NZ REMARK 470 TYR D 88 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 91 CB CG CD OE1 OE2 REMARK 470 ASN D 92 CB CG OD1 ND2 REMARK 470 ALA D 93 CB REMARK 470 GLU D 112 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 146 OH TYR B 201 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 39 114.04 -27.26 REMARK 500 SER A 88 -170.60 -178.23 REMARK 500 LYS A 134 -38.91 -36.85 REMARK 500 ILE A 137 48.91 -96.89 REMARK 500 ALA A 138 -86.12 -166.40 REMARK 500 ASN A 139 38.04 -89.91 REMARK 500 GLN A 141 -12.99 69.51 REMARK 500 PRO A 154 -169.79 -72.87 REMARK 500 HIS A 156 65.79 -102.74 REMARK 500 PRO A 232 68.65 -66.07 REMARK 500 ALA A 241 146.87 -171.14 REMARK 500 ASP B 3 153.09 -30.82 REMARK 500 ASN B 17 57.21 -115.39 REMARK 500 ASN B 34 86.86 37.99 REMARK 500 SER B 37 160.30 -42.04 REMARK 500 GLN B 40 145.64 -173.47 REMARK 500 LEU B 41 -65.39 -109.56 REMARK 500 PRO B 53 -39.13 -39.79 REMARK 500 SER B 90 -143.85 -146.14 REMARK 500 ALA B 93 -40.69 135.92 REMARK 500 GLU B 94 -151.99 42.58 REMARK 500 GLN B 127 89.26 -66.37 REMARK 500 LYS B 177 -80.26 -50.05 REMARK 500 ASN B 178 52.46 -116.06 REMARK 500 LEU B 198 8.11 -66.09 REMARK 500 THR C 39 113.35 -27.70 REMARK 500 SER C 88 -169.45 -177.73 REMARK 500 LYS C 134 -37.60 -37.76 REMARK 500 ILE C 137 48.02 -93.56 REMARK 500 ALA C 138 -86.07 -168.47 REMARK 500 ASN C 139 37.13 -90.04 REMARK 500 GLN C 141 -9.73 69.22 REMARK 500 HIS C 156 67.06 -101.76 REMARK 500 TYR C 187 51.65 -119.10 REMARK 500 LEU C 219 150.85 -49.75 REMARK 500 PRO C 232 68.41 -65.38 REMARK 500 ALA C 241 146.08 -171.56 REMARK 500 GLN D 2 127.06 -26.27 REMARK 500 ASP D 3 152.99 -40.78 REMARK 500 ASN D 17 57.75 -116.50 REMARK 500 ASN D 34 83.13 42.50 REMARK 500 SER D 37 161.23 -44.19 REMARK 500 GLN D 40 145.88 -174.33 REMARK 500 LEU D 41 -67.11 -109.31 REMARK 500 SER D 90 -144.19 -147.07 REMARK 500 ALA D 93 -41.05 136.28 REMARK 500 GLU D 94 -154.10 44.00 REMARK 500 GLN D 127 87.43 -65.37 REMARK 500 LYS D 177 -80.48 -50.31 REMARK 500 ASN D 178 50.61 -114.83 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 35 0.08 SIDE CHAIN REMARK 500 TYR D 147 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SBB RELATED DB: PDB REMARK 900 TCR BETA CHAIN COMPLEXED WITH SUPERANTIGEN SEB REMARK 900 RELATED ID: 1JCK RELATED DB: PDB REMARK 900 TCR BETA CHAIN COMPLEXED WITH SUPERANTIGEN SEC3 REMARK 900 RELATED ID: 1L0Y RELATED DB: PDB REMARK 900 T CELL RECEPTOR BETA CHAIN COMPLEXED WITH SUPERANTIGEN SPEA SOAKED REMARK 900 WITH ZINC REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAINS A AND C ARE NOT D10 TCR, GENBANK ENTRY AAB41230. REMARK 999 THEY ARE RATHER 14.3.D TCR, WHOSE SEQUENCE HAS NOT BEEN REMARK 999 DEPOSITED. THE TWO ARE SLIGHTLY DIFFERENT AND HENCE REMARK 999 GIVE RISE TO THE FOUR SEQADV. DBREF 1L0X A 3 246 UNP P01851 TCB2_MOUSE 32 267 DBREF 1L0X C 3 246 UNP P01851 TCB2_MOUSE 32 267 DBREF 1L0X B 1 221 UNP P08095 SPEA_STRPY 31 251 DBREF 1L0X D 1 221 UNP P08095 SPEA_STRPY 31 251 SEQADV 1L0X GLN A 24 UNP P01851 ASN 53 ENGINEERED MUTATION SEQADV 1L0X GLN A 74 UNP P01851 ASN 102 ENGINEERED MUTATION SEQADV 1L0X A UNP P01851 GLN 125 SEE REMARK 999 SEQADV 1L0X GLY A 99 UNP P01851 SEE REMARK 999 SEQADV 1L0X SER A 100 UNP P01851 SEE REMARK 999 SEQADV 1L0X TYR A 101 UNP P01851 SEE REMARK 999 SEQADV 1L0X GLN A 121 UNP P01851 ASN 146 ENGINEERED MUTATION SEQADV 1L0X GLN C 24 UNP P01851 ASN 53 ENGINEERED MUTATION SEQADV 1L0X GLN C 74 UNP P01851 ASN 102 ENGINEERED MUTATION SEQADV 1L0X C UNP P01851 GLN 125 SEE REMARK 999 SEQADV 1L0X GLY C 99 UNP P01851 SEE REMARK 999 SEQADV 1L0X SER C 100 UNP P01851 SEE REMARK 999 SEQADV 1L0X TYR C 101 UNP P01851 SEE REMARK 999 SEQADV 1L0X GLN C 121 UNP P01851 ASN 146 ENGINEERED MUTATION SEQADV 1L0X SER B 90 UNP P08095 CYS 120 ENGINEERED MUTATION SEQADV 1L0X SER D 90 UNP P08095 CYS 120 ENGINEERED MUTATION SEQRES 1 A 238 ALA VAL THR GLN SER PRO ARG ASN LYS VAL ALA VAL THR SEQRES 2 A 238 GLY GLY LYS VAL THR LEU SER CYS GLN GLN THR ASN ASN SEQRES 3 A 238 HIS ASN ASN MET TYR TRP TYR ARG GLN ASP THR GLY HIS SEQRES 4 A 238 GLY LEU ARG LEU ILE HIS TYR SER TYR GLY ALA GLY SER SEQRES 5 A 238 THR GLU LYS GLY ASP ILE PRO ASP GLY TYR LYS ALA SER SEQRES 6 A 238 ARG PRO SER GLN GLU GLN PHE SER LEU ILE LEU GLU LEU SEQRES 7 A 238 ALA THR PRO SER GLN THR SER VAL TYR PHE CYS ALA SER SEQRES 8 A 238 GLY GLY GLY ARG GLY SER TYR ALA GLU GLN PHE PHE GLY SEQRES 9 A 238 PRO GLY THR ARG LEU THR VAL LEU GLU ASP LEU ARG GLN SEQRES 10 A 238 VAL THR PRO PRO LYS VAL SER LEU PHE GLU PRO SER LYS SEQRES 11 A 238 ALA GLU ILE ALA ASN LYS GLN LYS ALA THR LEU VAL CYS SEQRES 12 A 238 LEU ALA ARG GLY PHE PHE PRO ASP HIS VAL GLU LEU SER SEQRES 13 A 238 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL SER SEQRES 14 A 238 THR ASP PRO GLN ALA TYR LYS GLU SER ASN TYR SER TYR SEQRES 15 A 238 CYS LEU SER SER ARG LEU ARG VAL SER ALA THR PHE TRP SEQRES 16 A 238 HIS ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL GLN PHE SEQRES 17 A 238 HIS GLY LEU SER GLU GLU ASP LYS TRP PRO GLU GLY SER SEQRES 18 A 238 PRO LYS PRO VAL THR GLN ASN ILE SER ALA GLU ALA TRP SEQRES 19 A 238 GLY ARG ALA ASP SEQRES 1 B 221 GLN GLN ASP PRO ASP PRO SER GLN LEU HIS ARG SER SER SEQRES 2 B 221 LEU VAL LYS ASN LEU GLN ASN ILE TYR PHE LEU TYR GLU SEQRES 3 B 221 GLY ASP PRO VAL THR HIS GLU ASN VAL LYS SER VAL ASP SEQRES 4 B 221 GLN LEU LEU SER HIS ASP LEU ILE TYR ASN VAL SER GLY SEQRES 5 B 221 PRO ASN TYR ASP LYS LEU LYS THR GLU LEU LYS ASN GLN SEQRES 6 B 221 GLU MET ALA THR LEU PHE LYS ASP LYS ASN VAL ASP ILE SEQRES 7 B 221 TYR GLY VAL GLU TYR TYR HIS LEU CYS TYR LEU SER GLU SEQRES 8 B 221 ASN ALA GLU ARG SER ALA CYS ILE TYR GLY GLY VAL THR SEQRES 9 B 221 ASN HIS GLU GLY ASN HIS LEU GLU ILE PRO LYS LYS ILE SEQRES 10 B 221 VAL VAL LYS VAL SER ILE ASP GLY ILE GLN SER LEU SER SEQRES 11 B 221 PHE ASP ILE GLU THR ASN LYS LYS MET VAL THR ALA GLN SEQRES 12 B 221 GLU LEU ASP TYR LYS VAL ARG LYS TYR LEU THR ASP ASN SEQRES 13 B 221 LYS GLN LEU TYR THR ASN GLY PRO SER LYS TYR GLU THR SEQRES 14 B 221 GLY TYR ILE LYS PHE ILE PRO LYS ASN LYS GLU SER PHE SEQRES 15 B 221 TRP PHE ASP PHE PHE PRO GLU PRO GLU PHE THR GLN SER SEQRES 16 B 221 LYS TYR LEU MET ILE TYR LYS ASP ASN GLU THR LEU ASP SEQRES 17 B 221 SER ASN THR SER GLN ILE GLU VAL TYR LEU THR THR LYS SEQRES 1 C 238 ALA VAL THR GLN SER PRO ARG ASN LYS VAL ALA VAL THR SEQRES 2 C 238 GLY GLY LYS VAL THR LEU SER CYS GLN GLN THR ASN ASN SEQRES 3 C 238 HIS ASN ASN MET TYR TRP TYR ARG GLN ASP THR GLY HIS SEQRES 4 C 238 GLY LEU ARG LEU ILE HIS TYR SER TYR GLY ALA GLY SER SEQRES 5 C 238 THR GLU LYS GLY ASP ILE PRO ASP GLY TYR LYS ALA SER SEQRES 6 C 238 ARG PRO SER GLN GLU GLN PHE SER LEU ILE LEU GLU LEU SEQRES 7 C 238 ALA THR PRO SER GLN THR SER VAL TYR PHE CYS ALA SER SEQRES 8 C 238 GLY GLY GLY ARG GLY SER TYR ALA GLU GLN PHE PHE GLY SEQRES 9 C 238 PRO GLY THR ARG LEU THR VAL LEU GLU ASP LEU ARG GLN SEQRES 10 C 238 VAL THR PRO PRO LYS VAL SER LEU PHE GLU PRO SER LYS SEQRES 11 C 238 ALA GLU ILE ALA ASN LYS GLN LYS ALA THR LEU VAL CYS SEQRES 12 C 238 LEU ALA ARG GLY PHE PHE PRO ASP HIS VAL GLU LEU SER SEQRES 13 C 238 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL SER SEQRES 14 C 238 THR ASP PRO GLN ALA TYR LYS GLU SER ASN TYR SER TYR SEQRES 15 C 238 CYS LEU SER SER ARG LEU ARG VAL SER ALA THR PHE TRP SEQRES 16 C 238 HIS ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL GLN PHE SEQRES 17 C 238 HIS GLY LEU SER GLU GLU ASP LYS TRP PRO GLU GLY SER SEQRES 18 C 238 PRO LYS PRO VAL THR GLN ASN ILE SER ALA GLU ALA TRP SEQRES 19 C 238 GLY ARG ALA ASP SEQRES 1 D 221 GLN GLN ASP PRO ASP PRO SER GLN LEU HIS ARG SER SER SEQRES 2 D 221 LEU VAL LYS ASN LEU GLN ASN ILE TYR PHE LEU TYR GLU SEQRES 3 D 221 GLY ASP PRO VAL THR HIS GLU ASN VAL LYS SER VAL ASP SEQRES 4 D 221 GLN LEU LEU SER HIS ASP LEU ILE TYR ASN VAL SER GLY SEQRES 5 D 221 PRO ASN TYR ASP LYS LEU LYS THR GLU LEU LYS ASN GLN SEQRES 6 D 221 GLU MET ALA THR LEU PHE LYS ASP LYS ASN VAL ASP ILE SEQRES 7 D 221 TYR GLY VAL GLU TYR TYR HIS LEU CYS TYR LEU SER GLU SEQRES 8 D 221 ASN ALA GLU ARG SER ALA CYS ILE TYR GLY GLY VAL THR SEQRES 9 D 221 ASN HIS GLU GLY ASN HIS LEU GLU ILE PRO LYS LYS ILE SEQRES 10 D 221 VAL VAL LYS VAL SER ILE ASP GLY ILE GLN SER LEU SER SEQRES 11 D 221 PHE ASP ILE GLU THR ASN LYS LYS MET VAL THR ALA GLN SEQRES 12 D 221 GLU LEU ASP TYR LYS VAL ARG LYS TYR LEU THR ASP ASN SEQRES 13 D 221 LYS GLN LEU TYR THR ASN GLY PRO SER LYS TYR GLU THR SEQRES 14 D 221 GLY TYR ILE LYS PHE ILE PRO LYS ASN LYS GLU SER PHE SEQRES 15 D 221 TRP PHE ASP PHE PHE PRO GLU PRO GLU PHE THR GLN SER SEQRES 16 D 221 LYS TYR LEU MET ILE TYR LYS ASP ASN GLU THR LEU ASP SEQRES 17 D 221 SER ASN THR SER GLN ILE GLU VAL TYR LEU THR THR LYS HET GOL B 301 6 HET GOL D 302 6 HET GOL D 303 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *181(H2 O) HELIX 1 1 THR A 83 THR A 87 5 5 HELIX 2 2 SER A 100 ALA A 102 5 3 HELIX 3 3 ASP A 118 VAL A 122 5 5 HELIX 4 4 ALA A 200 HIS A 204 1 5 HELIX 5 5 ASP B 5 LEU B 9 5 5 HELIX 6 6 ARG B 11 VAL B 15 5 5 HELIX 7 7 LEU B 18 GLY B 27 1 10 HELIX 8 8 ASN B 64 LYS B 72 1 9 HELIX 9 9 ALA B 142 GLN B 158 1 17 HELIX 10 10 THR B 193 LEU B 198 1 6 HELIX 11 11 MET B 199 LYS B 202 5 4 HELIX 12 12 THR C 83 THR C 87 5 5 HELIX 13 13 SER C 100 ALA C 102 5 3 HELIX 14 14 ASP C 118 VAL C 122 5 5 HELIX 15 15 ALA C 200 HIS C 204 1 5 HELIX 16 16 ASP D 5 LEU D 9 5 5 HELIX 17 17 ARG D 11 VAL D 15 5 5 HELIX 18 18 LEU D 18 GLY D 27 1 10 HELIX 19 19 ASN D 64 LYS D 72 1 9 HELIX 20 20 ALA D 142 GLN D 158 1 17 HELIX 21 21 THR D 193 LEU D 198 1 6 HELIX 22 22 MET D 199 LYS D 202 5 4 SHEET 1 A 4 VAL A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 GLN A 25 -1 O GLN A 24 N THR A 5 SHEET 3 A 4 GLN A 74 LEU A 79 -1 O LEU A 79 N VAL A 19 SHEET 4 A 4 LYS A 66 SER A 68 -1 N SER A 68 O SER A 76 SHEET 1 B 5 GLU A 56 LYS A 57 0 SHEET 2 B 5 LEU A 43 SER A 49 -1 N TYR A 48 O GLU A 56 SHEET 3 B 5 ASN A 31 GLN A 37 -1 N TRP A 34 O ILE A 46 SHEET 4 B 5 SER A 88 GLY A 95 -1 O PHE A 91 N TYR A 35 SHEET 5 B 5 GLN A 106 PHE A 108 -1 O PHE A 107 N SER A 94 SHEET 1 C 6 GLU A 56 LYS A 57 0 SHEET 2 C 6 LEU A 43 SER A 49 -1 N TYR A 48 O GLU A 56 SHEET 3 C 6 ASN A 31 GLN A 37 -1 N TRP A 34 O ILE A 46 SHEET 4 C 6 SER A 88 GLY A 95 -1 O PHE A 91 N TYR A 35 SHEET 5 C 6 THR A 112 LEU A 250 -1 O THR A 112 N TYR A 90 SHEET 6 C 6 ASN A 10 VAL A 14 1 N ALA A 13 O LEU A 250 SHEET 1 D 4 LYS A 126 PHE A 130 0 SHEET 2 D 4 LYS A 142 PHE A 152 -1 O ARG A 150 N LYS A 126 SHEET 3 D 4 SER A 189 SER A 199 -1 O VAL A 198 N ALA A 143 SHEET 4 D 4 VAL A 172 THR A 174 -1 N SER A 173 O ARG A 195 SHEET 1 E 4 LYS A 126 PHE A 130 0 SHEET 2 E 4 LYS A 142 PHE A 152 -1 O ARG A 150 N LYS A 126 SHEET 3 E 4 SER A 189 SER A 199 -1 O VAL A 198 N ALA A 143 SHEET 4 E 4 TYR A 179 SER A 182 -1 N SER A 182 O SER A 189 SHEET 1 F 4 LYS A 166 VAL A 168 0 SHEET 2 F 4 VAL A 157 VAL A 163 -1 N VAL A 163 O LYS A 166 SHEET 3 F 4 HIS A 209 PHE A 216 -1 O GLN A 213 N SER A 160 SHEET 4 F 4 GLN A 235 TRP A 242 -1 O ALA A 241 N PHE A 210 SHEET 1 G 3 VAL B 30 VAL B 35 0 SHEET 2 G 3 VAL B 76 GLY B 80 -1 O ILE B 78 N HIS B 32 SHEET 3 G 3 VAL B 103 ASN B 105 -1 O THR B 104 N ASP B 77 SHEET 1 H 3 ASP B 45 TYR B 48 0 SHEET 2 H 3 LYS B 57 GLU B 61 -1 O LEU B 58 N TYR B 48 SHEET 3 H 3 SER B 96 TYR B 100 1 O ALA B 97 N LYS B 57 SHEET 1 I 5 ILE B 126 LYS B 137 0 SHEET 2 I 5 HIS B 110 ILE B 123 -1 N LYS B 115 O THR B 135 SHEET 3 I 5 SER B 212 THR B 220 1 O VAL B 216 N SER B 122 SHEET 4 I 5 TYR B 167 PRO B 176 -1 N LYS B 173 O GLU B 215 SHEET 5 I 5 PHE B 182 ASP B 185 -1 O PHE B 182 N PHE B 174 SHEET 1 J 2 MET B 139 THR B 141 0 SHEET 2 J 2 THR B 206 ASP B 208 -1 O LEU B 207 N VAL B 140 SHEET 1 K 4 VAL C 4 SER C 7 0 SHEET 2 K 4 VAL C 19 GLN C 25 -1 O GLN C 24 N THR C 5 SHEET 3 K 4 GLN C 74 LEU C 79 -1 O LEU C 79 N VAL C 19 SHEET 4 K 4 LYS C 66 SER C 68 -1 N SER C 68 O SER C 76 SHEET 1 L 5 GLU C 56 LYS C 57 0 SHEET 2 L 5 LEU C 43 SER C 49 -1 N TYR C 48 O GLU C 56 SHEET 3 L 5 ASN C 31 GLN C 37 -1 N TRP C 34 O ILE C 46 SHEET 4 L 5 SER C 88 GLY C 95 -1 O PHE C 91 N TYR C 35 SHEET 5 L 5 GLN C 106 PHE C 108 -1 O PHE C 107 N SER C 94 SHEET 1 M 6 GLU C 56 LYS C 57 0 SHEET 2 M 6 LEU C 43 SER C 49 -1 N TYR C 48 O GLU C 56 SHEET 3 M 6 ASN C 31 GLN C 37 -1 N TRP C 34 O ILE C 46 SHEET 4 M 6 SER C 88 GLY C 95 -1 O PHE C 91 N TYR C 35 SHEET 5 M 6 THR C 112 LEU C 250 -1 O THR C 112 N TYR C 90 SHEET 6 M 6 ASN C 10 VAL C 14 1 N LYS C 11 O THR C 115 SHEET 1 N 4 LYS C 126 PHE C 130 0 SHEET 2 N 4 LYS C 142 PHE C 152 -1 O ARG C 150 N LYS C 126 SHEET 3 N 4 SER C 189 SER C 199 -1 O VAL C 198 N ALA C 143 SHEET 4 N 4 VAL C 172 THR C 174 -1 N SER C 173 O ARG C 195 SHEET 1 O 4 LYS C 126 PHE C 130 0 SHEET 2 O 4 LYS C 142 PHE C 152 -1 O ARG C 150 N LYS C 126 SHEET 3 O 4 SER C 189 SER C 199 -1 O VAL C 198 N ALA C 143 SHEET 4 O 4 TYR C 179 SER C 182 -1 N TYR C 179 O CYS C 191 SHEET 1 P 4 LYS C 166 VAL C 168 0 SHEET 2 P 4 VAL C 157 VAL C 163 -1 N VAL C 163 O LYS C 166 SHEET 3 P 4 HIS C 209 PHE C 216 -1 O GLN C 213 N SER C 160 SHEET 4 P 4 GLN C 235 TRP C 242 -1 O ALA C 241 N PHE C 210 SHEET 1 Q 3 VAL D 30 VAL D 35 0 SHEET 2 Q 3 VAL D 76 GLY D 80 -1 O ILE D 78 N HIS D 32 SHEET 3 Q 3 VAL D 103 ASN D 105 -1 O THR D 104 N ASP D 77 SHEET 1 R 3 ASP D 45 TYR D 48 0 SHEET 2 R 3 LYS D 57 GLU D 61 -1 O LEU D 58 N TYR D 48 SHEET 3 R 3 SER D 96 TYR D 100 1 O ALA D 97 N LYS D 57 SHEET 1 S 5 ILE D 126 LYS D 137 0 SHEET 2 S 5 HIS D 110 ILE D 123 -1 N ILE D 117 O ILE D 133 SHEET 3 S 5 SER D 212 THR D 220 1 O VAL D 216 N SER D 122 SHEET 4 S 5 TYR D 167 PRO D 176 -1 N LYS D 173 O GLU D 215 SHEET 5 S 5 PHE D 182 ASP D 185 -1 O PHE D 182 N PHE D 174 SHEET 1 T 2 MET D 139 THR D 141 0 SHEET 2 T 2 THR D 206 ASP D 208 -1 O LEU D 207 N VAL D 140 SSBOND 1 CYS A 23 CYS A 92 1555 1555 2.02 SSBOND 2 CYS A 147 CYS A 212 1555 1555 2.03 SSBOND 3 CYS B 87 CYS B 98 1555 1555 2.03 SSBOND 4 CYS C 23 CYS C 92 1555 1555 2.01 SSBOND 5 CYS C 147 CYS C 212 1555 1555 2.02 SSBOND 6 CYS D 87 CYS D 98 1555 1555 2.05 CISPEP 1 SER A 7 PRO A 8 0 0.01 CISPEP 2 PHE A 153 PRO A 154 0 0.09 CISPEP 3 SER C 7 PRO C 8 0 0.10 CISPEP 4 PHE C 153 PRO C 154 0 -0.01 SITE 1 AC1 6 GLU A 56 ASN B 20 HIS B 85 PHE B 192 SITE 2 AC1 6 THR B 193 GLN B 194 SITE 1 AC2 5 GLU C 56 HIS D 85 THR D 193 GLN D 194 SITE 2 AC2 5 GOL D 303 SITE 1 AC3 5 GLU C 56 HOH C 272 ASN D 17 PHE D 192 SITE 2 AC3 5 GOL D 302 CRYST1 71.400 83.250 93.583 90.00 91.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014006 0.000000 0.000399 0.00000 SCALE2 0.000000 0.012012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010690 0.00000