HEADER VIRAL PROTEIN 22-FEB-02 1L2M TITLE MINIMIZED AVERAGE STRUCTURE OF THE N-TERMINAL, DNA-BINDING DOMAIN OF TITLE 2 THE REPLICATION INITIATION PROTEIN FROM A GEMINIVIRUS (TOMATO YELLOW TITLE 3 LEAF CURL VIRUS-SARDINIA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: REP PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 4-121), DNA-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOMATO YELLOW LEAF CURL SARDINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 123735; SOURCE 4 GENE: REP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS A+B FOLD, RBD-LIKE FOLD, VIRAL PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR R.CAMPOS-OLIVAS,J.M.LOUIS,D.CLEROT,B.GRONENBORN,A.M.GRONENBORN REVDAT 3 23-FEB-22 1L2M 1 REMARK REVDAT 2 24-FEB-09 1L2M 1 VERSN REVDAT 1 18-SEP-02 1L2M 0 JRNL AUTH R.CAMPOS-OLIVAS,J.M.LOUIS,D.CLEROT,B.GRONENBORN, JRNL AUTH 2 A.M.GRONENBORN JRNL TITL THE STRUCTURE OF A REPLICATION INITIATOR UNITES DIVERSE JRNL TITL 2 ASPECTS OF NUCLEIC ACID METABOLISM JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 10310 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12130667 JRNL DOI 10.1073/PNAS.152342699 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, DYANA REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015586. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 0.3M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8-1.0MM [10%-13C;U-99% 15N] REMARK 210 REP4-121, SODIUM PHOSPHATE 20MM, REMARK 210 NACL 100MM, DTT 1MM; 0.8-1.0MM REMARK 210 [U-13C;U-99% 15N] REP4-121, REMARK 210 SODIUM PHOSPHATE 20MM, NACL REMARK 210 100MM, DTT 1MM; 0.8-1.0MM [10%- REMARK 210 13C;U-99% 15N] REP4-121, SODIUM REMARK 210 PHOSPHATE 20MM, NACL 100MM, DTT REMARK 210 1MM; 0.8-1.0MM [U-13C;U-99% 15N] REMARK 210 REP4-121, SODIUM PHOSPHATE 20MM, REMARK 210 NACL 100MM, DTT 1MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; HNHB; 4D_ REMARK 210 13C/15N-SEPARATED_NOESY; 2D REMARK 210 HNCOCG AROM; 2D HNCO AROM; 4D REMARK 210 13C,13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 4.1.1, TALOS, DYANA REMARK 210 METHOD USED : TORSION ANGLE SIMULATED REMARK 210 ANHEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS ENTRY CONTAINS THE MINIMIZED AVERAGE STRUCTURE OF REMARK 210 THE 30-CONFORMER ENSEMBLE DEPOSITED UNDER CODE 1L5I. THE REMARK 210 SINGLE MODEL INCLUDED IN THIS ENTRY IS A GOOD REPRESENTATION OF THE REMARK 210 30-CONFORMER ENSEMBLE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 20 42.95 39.04 REMARK 500 THR A 39 -108.66 -115.80 REMARK 500 ASN A 40 137.67 -171.53 REMARK 500 LEU A 42 -84.54 -103.21 REMARK 500 CYS A 70 69.48 -108.46 REMARK 500 THR A 71 31.95 -96.02 REMARK 500 GLN A 73 38.66 -87.87 REMARK 500 LYS A 95 -143.90 -61.88 REMARK 500 SER A 97 142.51 156.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5297 RELATED DB: BMRB REMARK 900 1H, 13C, AND 15N NMR ASSIGNMENTS. COUPLING CONSTANTS HNHA. REMARK 900 RELATED ID: 1L5I RELATED DB: PDB REMARK 900 ENSEMBLE OF 30 CONFORMERS DBREF 1L2M A 4 121 UNP P27260 VAL1_TYLCS 4 121 SEQRES 1 A 118 SER GLY ARG PHE SER ILE LYS ALA LYS ASN TYR PHE LEU SEQRES 2 A 118 THR TYR PRO LYS CYS ASP LEU THR LYS GLU ASN ALA LEU SEQRES 3 A 118 SER GLN ILE THR ASN LEU GLN THR PRO THR ASN LYS LEU SEQRES 4 A 118 PHE ILE LYS ILE CYS ARG GLU LEU HIS GLU ASN GLY GLU SEQRES 5 A 118 PRO HIS LEU HIS ILE LEU ILE GLN PHE GLU GLY LYS TYR SEQRES 6 A 118 ASN CYS THR ASN GLN ARG PHE PHE ASP LEU VAL SER PRO SEQRES 7 A 118 THR ARG SER ALA HIS PHE HIS PRO ASN ILE GLN GLY ALA SEQRES 8 A 118 LYS SER SER SER ASP VAL LYS SER TYR ILE ASP LYS ASP SEQRES 9 A 118 GLY ASP VAL LEU GLU TRP GLY THR PHE GLN ILE ASP GLY SEQRES 10 A 118 ARG HELIX 1 1 THR A 24 LEU A 35 1 12 HELIX 2 2 SER A 98 LYS A 106 1 9 SHEET 1 A 5 ASN A 90 ALA A 94 0 SHEET 2 A 5 LYS A 10 TYR A 18 -1 N PHE A 15 O GLN A 92 SHEET 3 A 5 PRO A 56 ASN A 69 -1 O ILE A 62 N TYR A 14 SHEET 4 A 5 LYS A 41 LEU A 50 -1 N LYS A 45 O LEU A 61 SHEET 5 A 5 LEU A 111 TRP A 113 -1 O TRP A 113 N ILE A 44 SHEET 1 B 2 LEU A 78 VAL A 79 0 SHEET 2 B 2 HIS A 86 PHE A 87 -1 O PHE A 87 N LEU A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000