HEADER TRANSCRIPTION 26-FEB-02 1L3E TITLE NMR STRUCTURES OF THE HIF-1ALPHA CTAD/P300 CH1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA INDUCIBLE FACTOR-1 ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL TRANSACTIVATION DOMAIN (CTAD); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: P300 PROTEIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: CYSTEINE/HISTIDINE-RICH 1 DOMAIN (CH1); COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HYPOXIA INDUCIBLE FACTOR-1 ALPHA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: P300; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PACYC KEYWDS PROTEIN-PROTEIN COMPLEX, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 17 AUTHOR S.J.FREEDMAN,Z.J.SUN,F.POY,A.L.KUNG,D.M.LIVINGSTON,G.WAGNER,M.J.ECK REVDAT 5 23-FEB-22 1L3E 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 1L3E 1 VERSN REVDAT 3 01-APR-03 1L3E 1 JRNL REVDAT 2 11-FEB-03 1L3E 1 HEADER REVDAT 1 24-APR-02 1L3E 0 JRNL AUTH S.J.FREEDMAN,Z.Y.SUN,F.POY,A.L.KUNG,D.M.LIVINGSTON,G.WAGNER, JRNL AUTH 2 M.J.ECK JRNL TITL STRUCTURAL BASIS FOR RECRUITMENT OF CBP/P300 BY JRNL TITL 2 HYPOXIA-INDUCIBLE FACTOR-1 ALPHA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 5367 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11959990 JRNL DOI 10.1073/PNAS.082117899 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, X-PLOR 3.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1378 RESTRAINTS; 1126 ARE NOE-DERIVED DISTANCE RESTRAINTS REMARK 3 (INCLUDING 1013 INTRAMOLECULAR, 113 INTERMOLECULAR), 158 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, AND 94 HYDROGEN BOND RESTRAINTS REMARK 4 REMARK 4 1L3E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015604. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM CTAD/CH1 COMPLEX U-15N,13C; REMARK 210 0.1MM ZNSO4; 1MM DTT; 1MM CTAD/ REMARK 210 CH1 COMPLEX U-15N,13C; 0.1MM REMARK 210 ZNSO4; 1MM DTT; 1MM CTAD/CH1 REMARK 210 COMPLEX U-15N; 0.1MM ZNSO4; 1MM REMARK 210 DTT; 1MM CTAD/CH1 COMPLEX; 0.1MM REMARK 210 ZNSO4; 1MM DTT; 1MM CTAD/CH1 REMARK 210 COMPLEX 10% U-13C; 0.1MM ZNSO4; REMARK 210 1MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; REMARK 210 2D_NOESY; 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; UNITY; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 5.3, PROSA 3.7, XEASY REMARK 210 1.3.13, DYANA 1.4 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 17 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS B 125 H CYS B 129 1.50 REMARK 500 O MET B 150 H LEU B 154 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 89.49 -63.72 REMARK 500 1 MET A 3 57.47 -112.57 REMARK 500 1 PRO A 9 104.95 -50.74 REMARK 500 1 ALA A 20 91.43 -164.43 REMARK 500 1 GLN A 23 47.17 78.29 REMARK 500 1 SER A 25 99.47 64.24 REMARK 500 1 ARG A 26 149.91 -38.63 REMARK 500 1 GLN A 30 -72.73 -143.22 REMARK 500 1 ASP A 39 44.66 -92.82 REMARK 500 1 HIS B 106 64.94 62.30 REMARK 500 1 ALA B 108 107.16 179.78 REMARK 500 1 HIS B 125 -71.38 -61.28 REMARK 500 1 CYS B 142 141.45 -38.69 REMARK 500 1 LEU B 144 90.65 -162.81 REMARK 500 1 CYS B 160 64.79 -106.02 REMARK 500 1 LYS B 164 -43.93 83.94 REMARK 500 1 CYS B 166 -162.56 -77.15 REMARK 500 1 ARG B 186 60.79 61.49 REMARK 500 1 ASP B 188 46.88 -108.20 REMARK 500 1 CYS B 189 104.50 -46.44 REMARK 500 1 ASN B 197 96.85 -43.87 REMARK 500 2 ASP A 4 97.86 -50.00 REMARK 500 2 GLU A 5 19.57 -140.64 REMARK 500 2 SER A 6 127.44 175.13 REMARK 500 2 PRO A 9 104.85 -50.49 REMARK 500 2 GLN A 23 40.82 77.05 REMARK 500 2 SER A 25 -73.39 -57.30 REMARK 500 2 ARG A 26 -166.28 -128.88 REMARK 500 2 LEU A 28 -74.44 -65.12 REMARK 500 2 GLN A 30 -87.90 -133.96 REMARK 500 2 ASP A 39 46.23 -96.88 REMARK 500 2 GLN A 40 51.07 -104.78 REMARK 500 2 HIS B 106 92.15 -176.71 REMARK 500 2 THR B 107 106.29 -173.26 REMARK 500 2 ALA B 108 77.98 -64.48 REMARK 500 2 ALA B 126 -35.48 -36.17 REMARK 500 2 CYS B 142 99.07 -38.85 REMARK 500 2 LYS B 164 29.81 43.40 REMARK 500 2 SER B 165 38.87 174.88 REMARK 500 2 ASP B 188 76.63 67.82 REMARK 500 2 CYS B 189 64.20 -158.06 REMARK 500 2 VAL B 191 -63.94 -90.32 REMARK 500 2 LYS B 196 58.22 -154.49 REMARK 500 2 ALA B 198 172.66 64.75 REMARK 500 3 SER A 6 135.78 176.08 REMARK 500 3 ALA A 20 82.18 -150.93 REMARK 500 3 GLN A 23 60.29 75.45 REMARK 500 3 SER A 25 100.47 69.88 REMARK 500 3 ARG A 26 170.20 -46.49 REMARK 500 3 GLN A 30 -74.30 -145.15 REMARK 500 REMARK 500 THIS ENTRY HAS 339 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 125 NE2 REMARK 620 2 CYS B 129 SG 77.0 REMARK 620 3 CYS B 142 SG 154.8 93.6 REMARK 620 4 CYS B 147 SG 86.8 86.4 116.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 156 NE2 REMARK 620 2 CYS B 160 SG 146.2 REMARK 620 3 CYS B 166 SG 122.8 60.6 REMARK 620 4 CYS B 171 SG 88.0 84.4 144.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 180 NE2 REMARK 620 2 CYS B 184 SG 141.9 REMARK 620 3 CYS B 189 SG 144.8 35.5 REMARK 620 4 CYS B 192 SG 96.2 120.5 107.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZN1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: Zinc coordinate site 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: Zinc coordinate site 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN3 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: Zinc coordinate site 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 204 DBREF 1L3E A 1 42 UNP Q16665 HIF1A_HUMAN 785 826 DBREF 1L3E B 101 201 UNP Q09472 EP300_HUMAN 323 423 SEQADV 1L3E GLY A 1 UNP Q16665 GLN 785 CLONING ARTIFACT SEQRES 1 A 42 GLY SER MET ASP GLU SER GLY LEU PRO GLN LEU THR SER SEQRES 2 A 42 TYR ASP CYS GLU VAL ASN ALA PRO ILE GLN GLY SER ARG SEQRES 3 A 42 ASN LEU LEU GLN GLY GLU GLU LEU LEU ARG ALA LEU ASP SEQRES 4 A 42 GLN VAL ASN SEQRES 1 B 101 MET GLY SER GLY ALA HIS THR ALA ASP PRO GLU LYS ARG SEQRES 2 B 101 LYS LEU ILE GLN GLN GLN LEU VAL LEU LEU LEU HIS ALA SEQRES 3 B 101 HIS LYS CYS GLN ARG ARG GLU GLN ALA ASN GLY GLU VAL SEQRES 4 B 101 ARG GLN CYS ASN LEU PRO HIS CYS ARG THR MET LYS ASN SEQRES 5 B 101 VAL LEU ASN HIS MET THR HIS CYS GLN SER GLY LYS SER SEQRES 6 B 101 CYS GLN VAL ALA HIS CYS ALA SER SER ARG GLN ILE ILE SEQRES 7 B 101 SER HIS TRP LYS ASN CYS THR ARG HIS ASP CYS PRO VAL SEQRES 8 B 101 CYS LEU PRO LEU LYS ASN ALA GLY ASP LYS HET ZN B 202 1 HET ZN B 203 1 HET ZN B 204 1 HETNAM ZN ZINC ION FORMUL 3 ZN 3(ZN 2+) HELIX 1 1 THR A 12 ALA A 20 1 9 HELIX 2 2 GLY A 31 ASP A 39 1 9 HELIX 3 3 ASP B 109 GLU B 111 5 3 HELIX 4 4 LYS B 112 GLN B 134 1 23 HELIX 5 5 LEU B 144 THR B 158 1 15 HELIX 6 6 VAL B 168 CYS B 184 1 17 HELIX 7 7 VAL B 191 ASN B 197 1 7 SSBOND 1 CYS B 160 CYS B 166 1555 1555 2.37 SSBOND 2 CYS B 184 CYS B 189 1555 1555 1.44 LINK NE2 HIS B 125 ZN ZN B 202 1555 1555 2.05 LINK SG CYS B 129 ZN ZN B 202 1555 1555 2.35 LINK SG CYS B 142 ZN ZN B 202 1555 1555 2.35 LINK SG CYS B 147 ZN ZN B 202 1555 1555 2.35 LINK NE2 HIS B 156 ZN ZN B 203 1555 1555 2.05 LINK SG CYS B 160 ZN ZN B 203 1555 1555 2.35 LINK SG CYS B 166 ZN ZN B 203 1555 1555 2.35 LINK SG CYS B 171 ZN ZN B 203 1555 1555 2.35 LINK NE2 HIS B 180 ZN ZN B 204 1555 1555 2.05 LINK SG CYS B 184 ZN ZN B 204 1555 1555 2.35 LINK SG CYS B 189 ZN ZN B 204 1555 1555 2.35 LINK SG CYS B 192 ZN ZN B 204 1555 1555 2.35 SITE 1 ZN1 4 HIS B 125 CYS B 129 CYS B 142 CYS B 147 SITE 1 ZN2 4 HIS B 156 CYS B 160 CYS B 166 CYS B 171 SITE 1 ZN3 4 HIS B 180 CYS B 184 CYS B 189 CYS B 192 SITE 1 AC1 4 HIS B 125 CYS B 129 CYS B 142 CYS B 147 SITE 1 AC2 4 HIS B 156 CYS B 160 CYS B 166 CYS B 171 SITE 1 AC3 4 HIS B 180 CYS B 184 CYS B 189 CYS B 192 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1