HEADER HYDROLASE 26-FEB-02 1L3F TITLE THERMOLYSIN IN THE ABSENCE OF SUBSTRATE HAS AN OPEN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS HYDROLASE, THERMOLYSIN, MATRIX METALLOPROTEASE, ZINC METALLOPROTEASE, KEYWDS 2 HINGE-BENDING EXPDTA X-RAY DIFFRACTION AUTHOR A.C.HAUSRATH,B.W.MATTHEWS REVDAT 3 16-AUG-23 1L3F 1 REMARK LINK REVDAT 2 24-FEB-09 1L3F 1 VERSN REVDAT 1 03-JUL-02 1L3F 0 JRNL AUTH A.C.HAUSRATH,B.W.MATTHEWS JRNL TITL THERMOLYSIN IN THE ABSENCE OF SUBSTRATE HAS AN OPEN JRNL TITL 2 CONFORMATION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 1002 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 12037302 JRNL DOI 10.1107/S090744490200584X REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 22468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1138 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2427 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99000 REMARK 3 B22 (A**2) : -1.99000 REMARK 3 B33 (A**2) : 3.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 3.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 3.500 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.024 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : 0.54000 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB MODEL 8TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, DIMETHYLSULFOXIDE, NACL, ZN REMARK 280 ACETATE, PH 6.00, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.29150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.52600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.52600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.64575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.52600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.52600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.93725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.52600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.52600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.64575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.52600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.52600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.93725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.29150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 219 NZ REMARK 470 LYS E 316 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 509 O HOH E 729 5545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU E 187 CD GLU E 187 OE2 0.090 REMARK 500 GLU E 302 CD GLU E 302 OE2 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP E 16 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP E 16 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 TYR E 29 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP E 32 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP E 32 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP E 37 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP E 37 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR E 42 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 TYR E 42 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP E 43 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP E 43 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP E 59 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP E 67 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 TYR E 76 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP E 82 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP E 94 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP E 94 CB - CG - OD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG E 101 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP E 124 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP E 126 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP E 126 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 TYR E 157 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP E 170 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP E 170 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP E 185 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP E 191 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 THR E 194 CA - CB - CG2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP E 200 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP E 200 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP E 213 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG E 220 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP E 261 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG E 269 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR E 274 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 TYR E 274 CB - CG - CD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG E 285 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 THR E 293 CA - CB - CG2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP E 294 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL E 9 146.55 -176.27 REMARK 500 THR E 26 -61.31 70.80 REMARK 500 TYR E 46 17.24 54.94 REMARK 500 ALA E 68 -63.39 -12.24 REMARK 500 SER E 92 176.55 63.91 REMARK 500 ALA E 98 161.45 -48.93 REMARK 500 HIS E 105 33.46 72.49 REMARK 500 SER E 107 -164.54 66.90 REMARK 500 GLN E 128 -51.22 -122.06 REMARK 500 PRO E 132 121.59 -32.18 REMARK 500 THR E 152 -92.51 -128.75 REMARK 500 GLN E 158 132.86 -173.74 REMARK 500 ASN E 159 -143.72 47.70 REMARK 500 ASN E 183 38.99 34.90 REMARK 500 ASP E 185 177.69 177.69 REMARK 500 THR E 194 76.86 32.62 REMARK 500 ASP E 207 80.05 -150.38 REMARK 500 GLN E 225 170.85 -56.66 REMARK 500 ASP E 226 40.03 37.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 319 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 47.9 REMARK 620 3 ASP E 59 OD1 108.3 60.4 REMARK 620 4 ASP E 59 OD2 145.2 99.2 41.2 REMARK 620 5 GLN E 61 O 84.0 76.7 79.0 100.9 REMARK 620 6 HOH E 419 O 89.1 132.0 150.0 125.8 78.8 REMARK 620 7 HOH E 482 O 169.1 142.2 81.9 45.7 94.5 80.1 REMARK 620 8 HOH E 510 O 71.7 66.2 82.5 85.2 142.9 126.8 114.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 317 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE2 136.0 REMARK 620 3 GLU E 177 OE1 86.6 49.6 REMARK 620 4 ASP E 185 OD1 154.5 68.7 118.3 REMARK 620 5 GLU E 187 O 75.8 145.4 152.7 82.5 REMARK 620 6 GLU E 190 OE2 112.0 57.1 72.6 74.1 133.4 REMARK 620 7 GLU E 190 OE1 81.3 111.9 116.5 82.6 81.7 56.0 REMARK 620 8 HOH E 346 O 100.1 81.8 84.6 88.1 78.3 138.7 158.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 321 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 99.9 REMARK 620 3 GLU E 166 OE2 113.0 82.5 REMARK 620 4 HOH E 392 O 108.3 117.5 129.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 318 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 GLU E 177 OE1 42.2 REMARK 620 3 ASN E 183 O 86.7 122.2 REMARK 620 4 ASN E 183 ND2 97.1 97.6 56.7 REMARK 620 5 ASP E 185 OD2 92.3 113.2 87.8 142.4 REMARK 620 6 ASP E 185 OD1 63.8 72.2 113.8 160.2 41.3 REMARK 620 7 GLU E 190 OE2 94.5 60.3 176.3 126.5 88.6 63.8 REMARK 620 8 HOH E 353 O 89.1 67.1 93.5 38.5 178.1 138.8 90.0 REMARK 620 9 HOH E 475 O 172.3 136.4 90.1 75.3 94.6 123.9 89.2 84.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 O 73.7 REMARK 620 3 THR E 194 OG1 74.4 59.5 REMARK 620 4 ILE E 197 O 137.5 69.8 104.1 REMARK 620 5 ASP E 200 OD1 135.7 125.9 83.5 84.7 REMARK 620 6 ASP E 200 OD2 107.0 95.3 43.1 97.6 40.5 REMARK 620 7 HOH E 354 O 88.5 89.8 147.8 70.4 126.0 164.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 322 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 231 NE2 REMARK 620 2 HOH E 392 O 144.1 REMARK 620 3 HOH E 802 O 108.9 105.5 REMARK 620 4 HOH E 810 O 88.7 109.2 76.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 330 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 250 ND1 REMARK 620 2 HOH E 455 O 100.4 REMARK 620 3 HOH E 524 O 113.2 112.7 REMARK 620 4 HOH E 721 O 105.8 120.7 104.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 330 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8TLN RELATED DB: PDB REMARK 900 8TLN IS THERMOLYSIN IN THE CLOSED, SUBSTRATE-BOUND CONFORMATION DBREF 1L3F E 1 316 UNP P00800 THER_BACTH 1 316 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET CA E 317 1 HET CA E 318 1 HET CA E 319 1 HET CA E 320 1 HET ZN E 321 1 HET ZN E 322 1 HET ZN E 330 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 CA 4(CA 2+) FORMUL 6 ZN 3(ZN 2+) FORMUL 9 HOH *127(H2 O) HELIX 1 1 ASP E 67 ASN E 89 1 23 HELIX 2 2 PRO E 132 GLY E 135 5 4 HELIX 3 3 GLY E 136 TYR E 151 1 16 HELIX 4 4 GLN E 158 ASN E 181 1 24 HELIX 5 5 ASP E 207 TYR E 211 5 5 HELIX 6 6 HIS E 216 ARG E 220 5 5 HELIX 7 7 THR E 224 GLY E 247 1 24 HELIX 8 8 GLY E 259 TYR E 274 1 16 HELIX 9 9 ASN E 280 GLY E 297 1 18 HELIX 10 10 SER E 300 VAL E 313 1 14 SHEET 1 A 5 ALA E 56 ASP E 57 0 SHEET 2 A 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 A 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 A 5 THR E 4 ARG E 11 -1 N GLY E 10 O LYS E 18 SHEET 5 A 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 B 5 ALA E 113 TRP E 115 0 SHEET 2 B 5 MET E 120 TYR E 122 -1 O VAL E 121 N PHE E 114 SHEET 3 B 5 ILE E 100 VAL E 104 1 N SER E 103 O TYR E 122 SHEET 4 B 5 ILE E 39 ASP E 43 1 N TYR E 42 O SER E 102 SHEET 5 B 5 GLN E 31 ASP E 32 -1 N ASP E 32 O ILE E 39 SHEET 1 C 5 ALA E 113 TRP E 115 0 SHEET 2 C 5 MET E 120 TYR E 122 -1 O VAL E 121 N PHE E 114 SHEET 3 C 5 ILE E 100 VAL E 104 1 N SER E 103 O TYR E 122 SHEET 4 C 5 ILE E 39 ASP E 43 1 N TYR E 42 O SER E 102 SHEET 5 C 5 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 D 2 GLU E 187 ILE E 188 0 SHEET 2 D 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 E 2 GLY E 248 HIS E 250 0 SHEET 2 E 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E 319 1555 1555 2.25 LINK OD2 ASP E 57 CA CA E 319 1555 1555 2.98 LINK OD1 ASP E 59 CA CA E 319 1555 1555 2.15 LINK OD2 ASP E 59 CA CA E 319 1555 1555 3.39 LINK O GLN E 61 CA CA E 319 1555 1555 2.19 LINK OD2 ASP E 138 CA CA E 317 1555 1555 2.38 LINK NE2 HIS E 142 ZN ZN E 321 1555 1555 1.99 LINK NE2 HIS E 146 ZN ZN E 321 1555 1555 1.93 LINK OE2 GLU E 166 ZN ZN E 321 1555 1555 1.74 LINK OE2 GLU E 177 CA CA E 317 1555 1555 2.85 LINK OE1 GLU E 177 CA CA E 317 1555 1555 2.11 LINK OE2 GLU E 177 CA CA E 318 1555 1555 1.90 LINK OE1 GLU E 177 CA CA E 318 1555 1555 3.19 LINK O ASN E 183 CA CA E 318 1555 1555 1.89 LINK ND2 ASN E 183 CA CA E 318 1555 1555 3.39 LINK OD1 ASP E 185 CA CA E 317 1555 1555 2.29 LINK OD2 ASP E 185 CA CA E 318 1555 1555 1.75 LINK OD1 ASP E 185 CA CA E 318 1555 1555 3.23 LINK O GLU E 187 CA CA E 317 1555 1555 2.07 LINK OE2 GLU E 190 CA CA E 317 1555 1555 2.53 LINK OE1 GLU E 190 CA CA E 317 1555 1555 2.26 LINK OE2 GLU E 190 CA CA E 318 1555 1555 1.62 LINK O TYR E 193 CA CA E 320 1555 1555 2.38 LINK O THR E 194 CA CA E 320 1555 1555 2.45 LINK OG1 THR E 194 CA CA E 320 1555 1555 2.26 LINK O ILE E 197 CA CA E 320 1555 1555 2.38 LINK OD1 ASP E 200 CA CA E 320 1555 1555 2.04 LINK OD2 ASP E 200 CA CA E 320 1555 1555 3.32 LINK NE2 HIS E 231 ZN ZN E 322 1555 1555 2.01 LINK ND1 HIS E 250 ZN ZN E 330 1555 1555 1.92 LINK CA CA E 317 O HOH E 346 1555 1555 2.16 LINK CA CA E 318 O HOH E 353 1555 1555 1.82 LINK CA CA E 318 O HOH E 475 1555 1555 1.60 LINK CA CA E 319 O HOH E 419 1555 1555 2.32 LINK CA CA E 319 O HOH E 482 1555 1555 2.89 LINK CA CA E 319 O HOH E 510 1555 1555 1.87 LINK CA CA E 320 O HOH E 354 1555 1555 2.13 LINK ZN ZN E 321 O HOH E 392 1555 1555 2.38 LINK ZN ZN E 322 O HOH E 392 1555 1555 2.05 LINK ZN ZN E 322 O HOH E 802 1555 1555 2.01 LINK ZN ZN E 322 O HOH E 810 1555 1555 2.01 LINK ZN ZN E 330 O HOH E 455 1555 1555 2.19 LINK ZN ZN E 330 O HOH E 524 1555 1555 2.29 LINK ZN ZN E 330 O HOH E 721 1555 1555 2.25 CISPEP 1 LEU E 50 PRO E 51 0 4.72 SITE 1 AC1 7 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC1 7 GLU E 190 CA E 318 HOH E 346 SITE 1 AC2 8 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC2 8 ASP E 191 CA E 317 HOH E 353 HOH E 475 SITE 1 AC3 6 ASP E 57 ASP E 59 GLN E 61 HOH E 419 SITE 2 AC3 6 HOH E 482 HOH E 510 SITE 1 AC4 5 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC4 5 HOH E 354 SITE 1 AC5 7 HIS E 142 GLU E 143 HIS E 146 TYR E 157 SITE 2 AC5 7 GLU E 166 ZN E 322 HOH E 392 SITE 1 AC6 8 TYR E 157 GLU E 166 HIS E 231 ZN E 321 SITE 2 AC6 8 HOH E 392 HOH E 802 HOH E 810 HOH E 811 SITE 1 AC7 6 ARG E 47 LYS E 239 HIS E 250 HOH E 455 SITE 2 AC7 6 HOH E 524 HOH E 721 CRYST1 97.052 97.052 106.583 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010304 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009382 0.00000