data_1L4J # _entry.id 1L4J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1L4J pdb_00001l4j 10.2210/pdb1l4j/pdb NDB UD0018 ? ? RCSB RCSB015635 ? ? WWPDB D_1000015635 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-03-04 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' diffrn_source 3 5 'Structure model' software 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond 6 6 'Structure model' database_2 7 6 'Structure model' pdbx_struct_conn_angle 8 6 'Structure model' struct_conn 9 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_software.classification' 3 5 'Structure model' '_software.name' 4 5 'Structure model' '_software.version' 5 6 'Structure model' '_database_2.pdbx_DOI' 6 6 'Structure model' '_database_2.pdbx_database_accession' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 6 'Structure model' '_pdbx_struct_conn_angle.value' 20 6 'Structure model' '_struct_conn.pdbx_dist_value' 21 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 34 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 35 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1L4J _pdbx_database_status.recvd_initial_deposition_date 2002-03-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thorpe, J.H.' 1 'Gale, B.C.' 2 'Teixeira, S.C.M.' 3 'Cardin, C.J.' 4 # _citation.id primary _citation.title ;Conformational and Hydration Effects of Site-selective Sodium, Calcium and Strontium Ion Binding to the DNA Holliday Junction Structure d(TCGGTACCGA)4 ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 327 _citation.page_first 97 _citation.page_last 109 _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12614611 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(03)00088-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thorpe, J.H.' 1 ? primary 'Gale, B.C.' 2 ? primary 'Teixeira, S.C.M.' 3 ? primary 'Cardin, C.J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3'" 3045.005 4 ? ? ? 'section of Holliday junction' 2 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 water nat water 18.015 168 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGTACCGA _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DA 10 10 10 DA A A . n B 1 1 DT 1 11 11 DT T B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DG 4 14 14 DG G B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DA 10 20 20 DA A B . n C 1 1 DT 1 21 21 DT T C . n C 1 2 DC 2 22 22 DC C C . n C 1 3 DG 3 23 23 DG G C . n C 1 4 DG 4 24 24 DG G C . n C 1 5 DT 5 25 25 DT T C . n C 1 6 DA 6 26 26 DA A C . n C 1 7 DC 7 27 27 DC C C . n C 1 8 DC 8 28 28 DC C C . n C 1 9 DG 9 29 29 DG G C . n C 1 10 DA 10 30 30 DA A C . n D 1 1 DT 1 31 31 DT T D . n D 1 2 DC 2 32 32 DC C D . n D 1 3 DG 3 33 33 DG G D . n D 1 4 DG 4 34 34 DG G D . n D 1 5 DT 5 35 35 DT T D . n D 1 6 DA 6 36 36 DA A D . n D 1 7 DC 7 37 37 DC C D . n D 1 8 DC 8 38 38 DC C D . n D 1 9 DG 9 39 39 DG G D . n D 1 10 DA 10 40 40 DA A D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA 1 101 101 CA CA A . F 2 CA 1 102 102 CA CA B . G 2 CA 1 104 104 CA CA C . H 2 CA 1 103 103 CA CA D . I 3 NA 1 105 105 NA NA D . J 3 NA 1 106 106 NA NA D . K 4 HOH 1 501 501 HOH HOH A . K 4 HOH 2 503 503 HOH HOH A . K 4 HOH 3 504 504 HOH HOH A . K 4 HOH 4 514 514 HOH HOH A . K 4 HOH 5 518 518 HOH HOH A . K 4 HOH 6 521 521 HOH HOH A . K 4 HOH 7 522 522 HOH HOH A . K 4 HOH 8 526 526 HOH HOH A . K 4 HOH 9 527 527 HOH HOH A . K 4 HOH 10 540 540 HOH HOH A . K 4 HOH 11 541 541 HOH HOH A . K 4 HOH 12 542 542 HOH HOH A . K 4 HOH 13 543 543 HOH HOH A . K 4 HOH 14 546 546 HOH HOH A . K 4 HOH 15 548 548 HOH HOH A . K 4 HOH 16 549 549 HOH HOH A . K 4 HOH 17 551 551 HOH HOH A . K 4 HOH 18 554 554 HOH HOH A . K 4 HOH 19 555 555 HOH HOH A . K 4 HOH 20 561 561 HOH HOH A . K 4 HOH 21 562 562 HOH HOH A . K 4 HOH 22 563 563 HOH HOH A . K 4 HOH 23 576 576 HOH HOH A . K 4 HOH 24 577 577 HOH HOH A . K 4 HOH 25 578 578 HOH HOH A . K 4 HOH 26 580 580 HOH HOH A . K 4 HOH 27 588 588 HOH HOH A . K 4 HOH 28 601 601 HOH HOH A . K 4 HOH 29 602 602 HOH HOH A . K 4 HOH 30 605 605 HOH HOH A . K 4 HOH 31 624 624 HOH HOH A . K 4 HOH 32 625 625 HOH HOH A . K 4 HOH 33 627 627 HOH HOH A . K 4 HOH 34 632 632 HOH HOH A . K 4 HOH 35 633 633 HOH HOH A . K 4 HOH 36 634 634 HOH HOH A . K 4 HOH 37 636 636 HOH HOH A . K 4 HOH 38 652 652 HOH HOH A . K 4 HOH 39 653 653 HOH HOH A . K 4 HOH 40 657 657 HOH HOH A . K 4 HOH 41 661 661 HOH HOH A . K 4 HOH 42 666 666 HOH HOH A . L 4 HOH 1 508 508 HOH HOH B . L 4 HOH 2 511 511 HOH HOH B . L 4 HOH 3 512 512 HOH HOH B . L 4 HOH 4 519 519 HOH HOH B . L 4 HOH 5 523 523 HOH HOH B . L 4 HOH 6 525 525 HOH HOH B . L 4 HOH 7 530 530 HOH HOH B . L 4 HOH 8 538 538 HOH HOH B . L 4 HOH 9 547 547 HOH HOH B . L 4 HOH 10 550 550 HOH HOH B . L 4 HOH 11 552 552 HOH HOH B . L 4 HOH 12 553 553 HOH HOH B . L 4 HOH 13 565 565 HOH HOH B . L 4 HOH 14 566 566 HOH HOH B . L 4 HOH 15 567 567 HOH HOH B . L 4 HOH 16 589 589 HOH HOH B . L 4 HOH 17 590 590 HOH HOH B . L 4 HOH 18 591 591 HOH HOH B . L 4 HOH 19 592 592 HOH HOH B . L 4 HOH 20 606 606 HOH HOH B . L 4 HOH 21 607 607 HOH HOH B . L 4 HOH 22 608 608 HOH HOH B . L 4 HOH 23 620 620 HOH HOH B . L 4 HOH 24 621 621 HOH HOH B . L 4 HOH 25 622 622 HOH HOH B . L 4 HOH 26 623 623 HOH HOH B . L 4 HOH 27 629 629 HOH HOH B . L 4 HOH 28 630 630 HOH HOH B . L 4 HOH 29 631 631 HOH HOH B . L 4 HOH 30 640 640 HOH HOH B . L 4 HOH 31 641 641 HOH HOH B . L 4 HOH 32 642 642 HOH HOH B . L 4 HOH 33 645 645 HOH HOH B . L 4 HOH 34 647 647 HOH HOH B . L 4 HOH 35 658 658 HOH HOH B . L 4 HOH 36 659 659 HOH HOH B . L 4 HOH 37 662 662 HOH HOH B . M 4 HOH 1 507 507 HOH HOH C . M 4 HOH 2 517 517 HOH HOH C . M 4 HOH 3 524 524 HOH HOH C . M 4 HOH 4 531 531 HOH HOH C . M 4 HOH 5 532 532 HOH HOH C . M 4 HOH 6 534 534 HOH HOH C . M 4 HOH 7 536 536 HOH HOH C . M 4 HOH 8 537 537 HOH HOH C . M 4 HOH 9 556 556 HOH HOH C . M 4 HOH 10 557 557 HOH HOH C . M 4 HOH 11 564 564 HOH HOH C . M 4 HOH 12 568 568 HOH HOH C . M 4 HOH 13 570 570 HOH HOH C . M 4 HOH 14 571 571 HOH HOH C . M 4 HOH 15 573 573 HOH HOH C . M 4 HOH 16 582 582 HOH HOH C . M 4 HOH 17 583 583 HOH HOH C . M 4 HOH 18 584 584 HOH HOH C . M 4 HOH 19 587 587 HOH HOH C . M 4 HOH 20 593 593 HOH HOH C . M 4 HOH 21 594 594 HOH HOH C . M 4 HOH 22 596 596 HOH HOH C . M 4 HOH 23 597 597 HOH HOH C . M 4 HOH 24 598 598 HOH HOH C . M 4 HOH 25 599 599 HOH HOH C . M 4 HOH 26 603 603 HOH HOH C . M 4 HOH 27 609 609 HOH HOH C . M 4 HOH 28 610 610 HOH HOH C . M 4 HOH 29 612 612 HOH HOH C . M 4 HOH 30 617 617 HOH HOH C . M 4 HOH 31 618 618 HOH HOH C . M 4 HOH 32 637 637 HOH HOH C . M 4 HOH 33 638 638 HOH HOH C . M 4 HOH 34 646 646 HOH HOH C . M 4 HOH 35 654 654 HOH HOH C . M 4 HOH 36 656 656 HOH HOH C . M 4 HOH 37 667 667 HOH HOH C . M 4 HOH 38 668 668 HOH HOH C . N 4 HOH 1 502 502 HOH HOH D . N 4 HOH 2 505 505 HOH HOH D . N 4 HOH 3 506 506 HOH HOH D . N 4 HOH 4 509 509 HOH HOH D . N 4 HOH 5 510 510 HOH HOH D . N 4 HOH 6 513 513 HOH HOH D . N 4 HOH 7 515 515 HOH HOH D . N 4 HOH 8 516 516 HOH HOH D . N 4 HOH 9 520 520 HOH HOH D . N 4 HOH 10 528 528 HOH HOH D . N 4 HOH 11 529 529 HOH HOH D . N 4 HOH 12 533 533 HOH HOH D . N 4 HOH 13 535 535 HOH HOH D . N 4 HOH 14 539 539 HOH HOH D . N 4 HOH 15 544 544 HOH HOH D . N 4 HOH 16 545 545 HOH HOH D . N 4 HOH 17 558 558 HOH HOH D . N 4 HOH 18 559 559 HOH HOH D . N 4 HOH 19 560 560 HOH HOH D . N 4 HOH 20 569 569 HOH HOH D . N 4 HOH 21 572 572 HOH HOH D . N 4 HOH 22 574 574 HOH HOH D . N 4 HOH 23 575 575 HOH HOH D . N 4 HOH 24 579 579 HOH HOH D . N 4 HOH 25 581 581 HOH HOH D . N 4 HOH 26 585 585 HOH HOH D . N 4 HOH 27 586 586 HOH HOH D . N 4 HOH 28 595 595 HOH HOH D . N 4 HOH 29 600 600 HOH HOH D . N 4 HOH 30 604 604 HOH HOH D . N 4 HOH 31 611 611 HOH HOH D . N 4 HOH 32 613 613 HOH HOH D . N 4 HOH 33 614 614 HOH HOH D . N 4 HOH 34 615 615 HOH HOH D . N 4 HOH 35 616 616 HOH HOH D . N 4 HOH 36 619 619 HOH HOH D . N 4 HOH 37 626 626 HOH HOH D . N 4 HOH 38 628 628 HOH HOH D . N 4 HOH 39 635 635 HOH HOH D . N 4 HOH 40 639 639 HOH HOH D . N 4 HOH 41 643 643 HOH HOH D . N 4 HOH 42 644 644 HOH HOH D . N 4 HOH 43 648 648 HOH HOH D . N 4 HOH 44 649 649 HOH HOH D . N 4 HOH 45 650 650 HOH HOH D . N 4 HOH 46 651 651 HOH HOH D . N 4 HOH 47 655 655 HOH HOH D . N 4 HOH 48 660 660 HOH HOH D . N 4 HOH 49 663 663 HOH HOH D . N 4 HOH 50 664 664 HOH HOH D . N 4 HOH 51 665 665 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.0 ? 1 XDS 'data reduction' . ? 2 XTALVIEW refinement . ? 3 MAR345 'data collection' . ? 4 XDS 'data scaling' . ? 5 # _cell.entry_id 1L4J _cell.length_a 66.067 _cell.length_b 23.775 _cell.length_c 73.816 _cell.angle_alpha 90.00 _cell.angle_beta 110.58 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L4J _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 1L4J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.47 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'Sodium Cacodylate, Calcium Chloride, MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Sodium Cacodylate' ? ? ? 1 2 1 'Calcium Chloride' ? ? ? 1 3 1 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-12-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.073 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.073 # _reflns.entry_id 1L4J _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 1.85 _reflns.number_obs 8780 _reflns.number_all 9224 _reflns.percent_possible_obs 97.35 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.25 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.0 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs 0.199 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.45 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1913 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1L4J _refine.ls_number_reflns_obs 8780 _refine.ls_number_reflns_all 9180 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 97.35 _refine.ls_R_factor_obs 0.23144 _refine.ls_R_factor_all 0.2314 _refine.ls_R_factor_R_work 0.22821 _refine.ls_R_factor_R_free 0.29726 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 440 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 18.270 _refine.aniso_B[1][1] 0.26 _refine.aniso_B[2][2] 1.15 _refine.aniso_B[3][3] -1.64 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.32 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.189 _refine.overall_SU_B 5.120 _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc 0.929 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML 0.159 _refine.pdbx_overall_ESU_R 0.195 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free 0.858 _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 808 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 168 _refine_hist.number_atoms_total 982 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.021 ? 900 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 372 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.641 3.000 ? 1372 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.320 3.000 ? 936 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.081 0.200 ? 120 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.015 0.020 ? 412 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.348 0.300 ? 275 'X-RAY DIFFRACTION' ? r_nbd_other 0.220 0.300 ? 458 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.180 0.500 ? 136 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.037 0.500 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.133 0.300 ? 34 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.211 0.300 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.230 0.500 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.027 3.000 ? 900 'X-RAY DIFFRACTION' ? r_scangle_it 2.520 4.500 ? 1372 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.948 _refine_ls_shell.number_reflns_R_work 1281 _refine_ls_shell.R_factor_R_work 0.246 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.303 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1L4J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1L4J _struct.title 'Holliday Junction TCGGTACCGA with Na and Ca Binding Sites.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1L4J _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Holliday Junction, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1L4J _struct_ref.pdbx_db_accession 1L4J _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1L4J A 1 ? 10 ? 1L4J 1 ? 10 ? 1 10 2 1 1L4J B 1 ? 10 ? 1L4J 11 ? 20 ? 11 20 3 1 1L4J C 1 ? 10 ? 1L4J 21 ? 30 ? 21 30 4 1 1L4J D 1 ? 10 ? 1L4J 31 ? 40 ? 31 40 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details 'biological unit is composed of 4 strands' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 503 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc2 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 540 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc3 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 541 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc4 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 542 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc5 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 543 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc6 metalc ? ? E CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 101 D HOH 502 1_555 ? ? ? ? ? ? ? 2.458 ? ? metalc7 metalc ? ? E CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 101 D HOH 544 1_555 ? ? ? ? ? ? ? 2.424 ? ? metalc8 metalc ? ? K HOH . O ? ? ? 1_555 F CA . CA ? ? A HOH 577 B CA 102 1_555 ? ? ? ? ? ? ? 2.662 ? ? metalc9 metalc ? ? K HOH . O ? ? ? 1_555 F CA . CA ? ? A HOH 588 B CA 102 1_555 ? ? ? ? ? ? ? 2.608 ? ? metalc10 metalc ? ? K HOH . O ? ? ? 1_555 J NA . NA ? ? A HOH 627 D NA 106 1_555 ? ? ? ? ? ? ? 2.552 ? ? metalc11 metalc ? ? F CA . CA ? ? ? 1_555 L HOH . O ? ? B CA 102 B HOH 512 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc12 metalc ? ? F CA . CA ? ? ? 1_555 L HOH . O ? ? B CA 102 B HOH 589 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc13 metalc ? ? F CA . CA ? ? ? 1_555 L HOH . O ? ? B CA 102 B HOH 590 1_555 ? ? ? ? ? ? ? 2.482 ? ? metalc14 metalc ? ? F CA . CA ? ? ? 1_555 L HOH . O ? ? B CA 102 B HOH 591 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc15 metalc ? ? F CA . CA ? ? ? 1_555 L HOH . O ? ? B CA 102 B HOH 592 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc16 metalc ? ? L HOH . O ? ? ? 1_555 G CA . CA ? ? B HOH 538 C CA 104 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc17 metalc ? ? L HOH . O ? ? ? 1_555 J NA . NA ? ? B HOH 659 D NA 106 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc18 metalc ? ? G CA . CA ? ? ? 1_555 M HOH . O ? ? C CA 104 C HOH 531 1_555 ? ? ? ? ? ? ? 2.403 ? ? metalc19 metalc ? ? G CA . CA ? ? ? 1_555 M HOH . O ? ? C CA 104 C HOH 582 1_555 ? ? ? ? ? ? ? 2.402 ? ? metalc20 metalc ? ? G CA . CA ? ? ? 1_555 M HOH . O ? ? C CA 104 C HOH 583 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc21 metalc ? ? G CA . CA ? ? ? 1_555 M HOH . O ? ? C CA 104 C HOH 584 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc22 metalc ? ? G CA . CA ? ? ? 1_555 M HOH . O ? ? C CA 104 C HOH 587 1_555 ? ? ? ? ? ? ? 2.434 ? ? metalc23 metalc ? ? M HOH . O ? ? ? 1_555 H CA . CA ? ? C HOH 570 D CA 103 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc24 metalc ? ? M HOH . O ? ? ? 1_555 H CA . CA ? ? C HOH 571 D CA 103 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc25 metalc ? ? M HOH . O ? ? ? 1_555 I NA . NA ? ? C HOH 610 D NA 105 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc26 metalc ? ? M HOH . O ? ? ? 1_555 I NA . NA ? ? C HOH 612 D NA 105 1_555 ? ? ? ? ? ? ? 2.560 ? ? metalc27 metalc ? ? H CA . CA ? ? ? 1_555 N HOH . O ? ? D CA 103 D HOH 515 1_555 ? ? ? ? ? ? ? 2.591 ? ? metalc28 metalc ? ? H CA . CA ? ? ? 1_555 N HOH . O ? ? D CA 103 D HOH 572 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc29 metalc ? ? H CA . CA ? ? ? 1_555 N HOH . O ? ? D CA 103 D HOH 581 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc30 metalc ? ? H CA . CA ? ? ? 1_555 N HOH . O ? ? D CA 103 D HOH 585 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc31 metalc ? ? H CA . CA ? ? ? 1_555 N HOH . O ? ? D CA 103 D HOH 586 1_555 ? ? ? ? ? ? ? 2.509 ? ? metalc32 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? D NA 105 D HOH 611 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc33 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? D NA 105 D HOH 613 1_555 ? ? ? ? ? ? ? 2.552 ? ? metalc34 metalc ? ? J NA . NA ? ? ? 1_555 N HOH . O ? ? D NA 106 D HOH 628 1_555 ? ? ? ? ? ? ? 2.720 ? ? metalc35 metalc ? ? J NA . NA ? ? ? 1_555 N HOH . O ? ? D NA 106 D HOH 651 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc36 metalc ? ? J NA . NA ? ? ? 1_555 N HOH . O ? ? D NA 106 D HOH 660 1_555 ? ? ? ? ? ? ? 2.513 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 D DA 10 N1 ? ? A DT 1 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 D DA 10 N6 ? ? A DT 1 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 D DG 9 N1 ? ? A DC 2 D DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 D DG 9 O6 ? ? A DC 2 D DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 D DG 9 N2 ? ? A DC 2 D DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 D DC 8 N3 ? ? A DG 3 D DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 D DC 8 O2 ? ? A DG 3 D DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 D DC 8 N4 ? ? A DG 3 D DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 D DC 7 N3 ? ? A DG 4 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 D DC 7 O2 ? ? A DG 4 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 D DC 7 N4 ? ? A DG 4 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 17 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 17 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 17 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 18 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 18 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 18 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 19 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 19 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 19 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 1 N3 ? ? B DA 20 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 1 O4 ? ? B DA 20 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 25 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 25 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 26 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 26 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 27 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 27 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 27 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 28 D DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 28 D DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 28 D DG 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 29 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 29 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 29 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 1 N3 ? ? C DA 30 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DT 1 O4 ? ? C DA 30 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? K HOH . ? A HOH 503 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 540 ? 1_555 138.8 ? 2 O ? K HOH . ? A HOH 503 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 541 ? 1_555 74.9 ? 3 O ? K HOH . ? A HOH 540 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 541 ? 1_555 71.8 ? 4 O ? K HOH . ? A HOH 503 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 542 ? 1_555 141.0 ? 5 O ? K HOH . ? A HOH 540 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 542 ? 1_555 73.7 ? 6 O ? K HOH . ? A HOH 541 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 542 ? 1_555 143.8 ? 7 O ? K HOH . ? A HOH 503 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 543 ? 1_555 77.9 ? 8 O ? K HOH . ? A HOH 540 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 543 ? 1_555 87.5 ? 9 O ? K HOH . ? A HOH 541 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 543 ? 1_555 104.4 ? 10 O ? K HOH . ? A HOH 542 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 543 ? 1_555 84.5 ? 11 O ? K HOH . ? A HOH 503 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 502 ? 1_555 74.2 ? 12 O ? K HOH . ? A HOH 540 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 502 ? 1_555 146.5 ? 13 O ? K HOH . ? A HOH 541 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 502 ? 1_555 137.5 ? 14 O ? K HOH . ? A HOH 542 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 502 ? 1_555 73.7 ? 15 O ? K HOH . ? A HOH 543 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 502 ? 1_555 96.8 ? 16 O ? K HOH . ? A HOH 503 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 544 ? 1_555 109.2 ? 17 O ? K HOH . ? A HOH 540 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 544 ? 1_555 89.2 ? 18 O ? K HOH . ? A HOH 541 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 544 ? 1_555 81.5 ? 19 O ? K HOH . ? A HOH 542 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 544 ? 1_555 87.6 ? 20 O ? K HOH . ? A HOH 543 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 544 ? 1_555 172.0 ? 21 O ? N HOH . ? D HOH 502 ? 1_555 CA ? E CA . ? A CA 101 ? 1_555 O ? N HOH . ? D HOH 544 ? 1_555 82.0 ? 22 O ? K HOH . ? A HOH 577 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? K HOH . ? A HOH 588 ? 1_555 81.1 ? 23 O ? K HOH . ? A HOH 577 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 512 ? 1_555 74.8 ? 24 O ? K HOH . ? A HOH 588 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 512 ? 1_555 134.4 ? 25 O ? K HOH . ? A HOH 577 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 589 ? 1_555 162.7 ? 26 O ? K HOH . ? A HOH 588 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 589 ? 1_555 106.6 ? 27 O ? L HOH . ? B HOH 512 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 589 ? 1_555 89.2 ? 28 O ? K HOH . ? A HOH 577 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 590 ? 1_555 81.2 ? 29 O ? K HOH . ? A HOH 588 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 590 ? 1_555 68.8 ? 30 O ? L HOH . ? B HOH 512 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 590 ? 1_555 69.7 ? 31 O ? L HOH . ? B HOH 589 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 590 ? 1_555 87.1 ? 32 O ? K HOH . ? A HOH 577 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 591 ? 1_555 121.8 ? 33 O ? K HOH . ? A HOH 588 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 591 ? 1_555 76.9 ? 34 O ? L HOH . ? B HOH 512 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 591 ? 1_555 148.5 ? 35 O ? L HOH . ? B HOH 589 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 591 ? 1_555 75.4 ? 36 O ? L HOH . ? B HOH 590 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 591 ? 1_555 134.9 ? 37 O ? K HOH . ? A HOH 577 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 592 ? 1_555 78.4 ? 38 O ? K HOH . ? A HOH 588 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 592 ? 1_555 138.5 ? 39 O ? L HOH . ? B HOH 512 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 592 ? 1_555 73.0 ? 40 O ? L HOH . ? B HOH 589 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 592 ? 1_555 103.6 ? 41 O ? L HOH . ? B HOH 590 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 592 ? 1_555 141.0 ? 42 O ? L HOH . ? B HOH 591 ? 1_555 CA ? F CA . ? B CA 102 ? 1_555 O ? L HOH . ? B HOH 592 ? 1_555 83.9 ? 43 O ? K HOH . ? A HOH 627 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? L HOH . ? B HOH 659 ? 1_555 63.7 ? 44 O ? K HOH . ? A HOH 627 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? N HOH . ? D HOH 628 ? 1_555 113.3 ? 45 O ? L HOH . ? B HOH 659 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? N HOH . ? D HOH 628 ? 1_555 72.8 ? 46 O ? K HOH . ? A HOH 627 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? N HOH . ? D HOH 651 ? 1_555 95.5 ? 47 O ? L HOH . ? B HOH 659 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? N HOH . ? D HOH 651 ? 1_555 132.6 ? 48 O ? N HOH . ? D HOH 628 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? N HOH . ? D HOH 651 ? 1_555 78.8 ? 49 O ? K HOH . ? A HOH 627 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? N HOH . ? D HOH 660 ? 1_555 159.5 ? 50 O ? L HOH . ? B HOH 659 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? N HOH . ? D HOH 660 ? 1_555 131.6 ? 51 O ? N HOH . ? D HOH 628 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? N HOH . ? D HOH 660 ? 1_555 86.3 ? 52 O ? N HOH . ? D HOH 651 ? 1_555 NA ? J NA . ? D NA 106 ? 1_555 O ? N HOH . ? D HOH 660 ? 1_555 82.1 ? 53 O ? L HOH . ? B HOH 538 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 531 ? 1_555 139.5 ? 54 O ? L HOH . ? B HOH 538 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 582 ? 1_555 144.5 ? 55 O ? M HOH . ? C HOH 531 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 582 ? 1_555 70.4 ? 56 O ? L HOH . ? B HOH 538 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 583 ? 1_555 69.3 ? 57 O ? M HOH . ? C HOH 531 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 583 ? 1_555 85.7 ? 58 O ? M HOH . ? C HOH 582 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 583 ? 1_555 144.5 ? 59 O ? L HOH . ? B HOH 538 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 584 ? 1_555 96.1 ? 60 O ? M HOH . ? C HOH 531 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 584 ? 1_555 108.6 ? 61 O ? M HOH . ? C HOH 582 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 584 ? 1_555 86.8 ? 62 O ? M HOH . ? C HOH 583 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 584 ? 1_555 76.2 ? 63 O ? L HOH . ? B HOH 538 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 587 ? 1_555 87.8 ? 64 O ? M HOH . ? C HOH 531 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 587 ? 1_555 72.7 ? 65 O ? M HOH . ? C HOH 582 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 587 ? 1_555 85.3 ? 66 O ? M HOH . ? C HOH 583 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 587 ? 1_555 112.8 ? 67 O ? M HOH . ? C HOH 584 ? 1_555 CA ? G CA . ? C CA 104 ? 1_555 O ? M HOH . ? C HOH 587 ? 1_555 171.0 ? 68 O ? M HOH . ? C HOH 570 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? M HOH . ? C HOH 571 ? 1_555 79.4 ? 69 O ? M HOH . ? C HOH 570 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 515 ? 1_555 101.2 ? 70 O ? M HOH . ? C HOH 571 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 515 ? 1_555 78.0 ? 71 O ? M HOH . ? C HOH 570 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 572 ? 1_555 106.3 ? 72 O ? M HOH . ? C HOH 571 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 572 ? 1_555 75.4 ? 73 O ? N HOH . ? D HOH 515 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 572 ? 1_555 137.0 ? 74 O ? M HOH . ? C HOH 570 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 581 ? 1_555 91.9 ? 75 O ? M HOH . ? C HOH 571 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 581 ? 1_555 144.0 ? 76 O ? N HOH . ? D HOH 515 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 581 ? 1_555 138.0 ? 77 O ? N HOH . ? D HOH 572 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 581 ? 1_555 73.7 ? 78 O ? M HOH . ? C HOH 570 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 585 ? 1_555 173.0 ? 79 O ? M HOH . ? C HOH 571 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 585 ? 1_555 94.4 ? 80 O ? N HOH . ? D HOH 515 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 585 ? 1_555 80.5 ? 81 O ? N HOH . ? D HOH 572 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 585 ? 1_555 68.7 ? 82 O ? N HOH . ? D HOH 581 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 585 ? 1_555 91.3 ? 83 O ? M HOH . ? C HOH 570 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 586 ? 1_555 78.3 ? 84 O ? M HOH . ? C HOH 571 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 586 ? 1_555 135.8 ? 85 O ? N HOH . ? D HOH 515 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 586 ? 1_555 69.7 ? 86 O ? N HOH . ? D HOH 572 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 586 ? 1_555 147.8 ? 87 O ? N HOH . ? D HOH 581 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 586 ? 1_555 74.3 ? 88 O ? N HOH . ? D HOH 585 ? 1_555 CA ? H CA . ? D CA 103 ? 1_555 O ? N HOH . ? D HOH 586 ? 1_555 108.6 ? 89 O ? M HOH . ? C HOH 610 ? 1_555 NA ? I NA . ? D NA 105 ? 1_555 O ? M HOH . ? C HOH 612 ? 1_555 85.4 ? 90 O ? M HOH . ? C HOH 610 ? 1_555 NA ? I NA . ? D NA 105 ? 1_555 O ? N HOH . ? D HOH 611 ? 1_555 168.1 ? 91 O ? M HOH . ? C HOH 612 ? 1_555 NA ? I NA . ? D NA 105 ? 1_555 O ? N HOH . ? D HOH 611 ? 1_555 85.2 ? 92 O ? M HOH . ? C HOH 610 ? 1_555 NA ? I NA . ? D NA 105 ? 1_555 O ? N HOH . ? D HOH 613 ? 1_555 106.7 ? 93 O ? M HOH . ? C HOH 612 ? 1_555 NA ? I NA . ? D NA 105 ? 1_555 O ? N HOH . ? D HOH 613 ? 1_555 132.3 ? 94 O ? N HOH . ? D HOH 611 ? 1_555 NA ? I NA . ? D NA 105 ? 1_555 O ? N HOH . ? D HOH 613 ? 1_555 84.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 101 ? 7 'BINDING SITE FOR RESIDUE CA A 101' AC2 Software B CA 102 ? 7 'BINDING SITE FOR RESIDUE CA B 102' AC3 Software D CA 103 ? 7 'BINDING SITE FOR RESIDUE CA D 103' AC4 Software C CA 104 ? 6 'BINDING SITE FOR RESIDUE CA C 104' AC5 Software D NA 105 ? 5 'BINDING SITE FOR RESIDUE NA D 105' AC6 Software D NA 106 ? 5 'BINDING SITE FOR RESIDUE NA D 106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH K . ? HOH A 503 . ? 1_555 ? 2 AC1 7 HOH K . ? HOH A 540 . ? 1_555 ? 3 AC1 7 HOH K . ? HOH A 541 . ? 1_555 ? 4 AC1 7 HOH K . ? HOH A 542 . ? 1_555 ? 5 AC1 7 HOH K . ? HOH A 543 . ? 1_555 ? 6 AC1 7 HOH N . ? HOH D 502 . ? 1_555 ? 7 AC1 7 HOH N . ? HOH D 544 . ? 1_555 ? 8 AC2 7 HOH K . ? HOH A 577 . ? 1_555 ? 9 AC2 7 HOH K . ? HOH A 588 . ? 1_555 ? 10 AC2 7 HOH L . ? HOH B 512 . ? 1_555 ? 11 AC2 7 HOH L . ? HOH B 589 . ? 1_555 ? 12 AC2 7 HOH L . ? HOH B 590 . ? 1_555 ? 13 AC2 7 HOH L . ? HOH B 591 . ? 1_555 ? 14 AC2 7 HOH L . ? HOH B 592 . ? 1_555 ? 15 AC3 7 HOH M . ? HOH C 570 . ? 1_555 ? 16 AC3 7 HOH M . ? HOH C 571 . ? 1_555 ? 17 AC3 7 HOH N . ? HOH D 515 . ? 1_555 ? 18 AC3 7 HOH N . ? HOH D 572 . ? 1_555 ? 19 AC3 7 HOH N . ? HOH D 581 . ? 1_555 ? 20 AC3 7 HOH N . ? HOH D 585 . ? 1_555 ? 21 AC3 7 HOH N . ? HOH D 586 . ? 1_555 ? 22 AC4 6 HOH L . ? HOH B 538 . ? 1_555 ? 23 AC4 6 HOH M . ? HOH C 531 . ? 1_555 ? 24 AC4 6 HOH M . ? HOH C 582 . ? 1_555 ? 25 AC4 6 HOH M . ? HOH C 583 . ? 1_555 ? 26 AC4 6 HOH M . ? HOH C 584 . ? 1_555 ? 27 AC4 6 HOH M . ? HOH C 587 . ? 1_555 ? 28 AC5 5 HOH M . ? HOH C 610 . ? 1_555 ? 29 AC5 5 HOH M . ? HOH C 612 . ? 1_555 ? 30 AC5 5 HOH N . ? HOH D 611 . ? 1_555 ? 31 AC5 5 HOH N . ? HOH D 613 . ? 1_555 ? 32 AC5 5 HOH N . ? HOH D 614 . ? 1_555 ? 33 AC6 5 HOH K . ? HOH A 627 . ? 1_555 ? 34 AC6 5 HOH L . ? HOH B 659 . ? 1_555 ? 35 AC6 5 HOH N . ? HOH D 628 . ? 1_555 ? 36 AC6 5 HOH N . ? HOH D 651 . ? 1_555 ? 37 AC6 5 HOH N . ? HOH D 660 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DT 1 ? ? "C3'" A DT 1 ? ? 1.369 1.419 -0.050 0.006 N 2 1 "O3'" A DT 1 ? ? P A DC 2 ? ? 1.691 1.607 0.084 0.012 Y 3 1 "O3'" A DC 8 ? ? "C3'" A DC 8 ? ? 1.380 1.419 -0.039 0.006 N 4 1 "O3'" A DG 9 ? ? "C3'" A DG 9 ? ? 1.372 1.419 -0.047 0.006 N 5 1 "O3'" D DA 36 ? ? "C3'" D DA 36 ? ? 1.374 1.419 -0.045 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DT 1 ? ? C4 A DT 1 ? ? O4 A DT 1 ? ? 124.45 119.90 4.55 0.60 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 101.00 105.90 -4.90 0.80 N 3 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 103.78 108.00 -4.22 0.70 N 4 1 C2 A DC 2 ? ? N3 A DC 2 ? ? C4 A DC 2 ? ? 123.72 119.90 3.82 0.50 N 5 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DT 5 ? ? 127.21 119.70 7.51 1.20 Y 6 1 "O5'" A DT 5 ? ? P A DT 5 ? ? OP1 A DT 5 ? ? 96.45 105.70 -9.25 0.90 N 7 1 N3 A DT 5 ? ? C4 A DT 5 ? ? O4 A DT 5 ? ? 123.66 119.90 3.76 0.60 N 8 1 "O3'" A DT 5 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 121.40 110.50 10.90 1.10 Y 9 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP1 A DA 6 ? ? 100.27 105.70 -5.43 0.90 N 10 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? "C1'" A DA 6 ? ? 97.33 102.40 -5.07 0.80 N 11 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.20 108.30 3.90 0.30 N 12 1 N1 A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 123.18 114.30 8.88 1.40 N 13 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 100.60 108.00 -7.40 0.70 N 14 1 "C5'" A DG 9 ? ? "C4'" A DG 9 ? ? "O4'" A DG 9 ? ? 116.40 109.80 6.60 1.10 N 15 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 101.49 108.00 -6.51 0.70 N 16 1 "O3'" B DT 11 ? ? P B DC 12 ? ? OP2 B DC 12 ? ? 118.30 110.50 7.80 1.10 Y 17 1 "O5'" B DG 13 ? ? P B DG 13 ? ? OP1 B DG 13 ? ? 119.17 110.70 8.47 1.20 N 18 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 101.68 108.00 -6.32 0.70 N 19 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 101.60 108.00 -6.40 0.70 N 20 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.54 108.30 2.24 0.30 N 21 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 100.09 108.00 -7.91 0.70 N 22 1 OP1 B DG 19 ? ? P B DG 19 ? ? OP2 B DG 19 ? ? 128.94 119.60 9.34 1.50 N 23 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 111.19 108.30 2.89 0.30 N 24 1 N1 C DT 21 ? ? C2 C DT 21 ? ? N3 C DT 21 ? ? 118.20 114.60 3.60 0.60 N 25 1 "O4'" C DG 24 ? ? "C1'" C DG 24 ? ? N9 C DG 24 ? ? 102.48 108.00 -5.52 0.70 N 26 1 N1 C DG 24 ? ? C6 C DG 24 ? ? O6 C DG 24 ? ? 124.31 119.90 4.41 0.60 N 27 1 C5 C DG 24 ? ? C6 C DG 24 ? ? O6 C DG 24 ? ? 124.45 128.60 -4.15 0.60 N 28 1 OP1 C DT 25 ? ? P C DT 25 ? ? OP2 C DT 25 ? ? 131.21 119.60 11.61 1.50 N 29 1 "O4'" C DT 25 ? ? "C1'" C DT 25 ? ? N1 C DT 25 ? ? 101.51 108.00 -6.49 0.70 N 30 1 "O4'" C DC 27 ? ? "C1'" C DC 27 ? ? N1 C DC 27 ? ? 101.60 108.00 -6.40 0.70 N 31 1 "O4'" C DC 28 ? ? "C1'" C DC 28 ? ? N1 C DC 28 ? ? 102.82 108.00 -5.18 0.70 N 32 1 "O4'" C DG 29 ? ? "C1'" C DG 29 ? ? N9 C DG 29 ? ? 102.33 108.00 -5.67 0.70 N 33 1 "O4'" D DT 31 ? ? "C1'" D DT 31 ? ? N1 D DT 31 ? ? 111.27 108.30 2.97 0.30 N 34 1 C4 D DT 31 ? ? C5 D DT 31 ? ? C7 D DT 31 ? ? 122.80 119.00 3.80 0.60 N 35 1 C6 D DT 31 ? ? C5 D DT 31 ? ? C7 D DT 31 ? ? 117.96 122.90 -4.94 0.60 N 36 1 "O4'" D DC 32 ? ? "C1'" D DC 32 ? ? N1 D DC 32 ? ? 103.27 108.00 -4.73 0.70 N 37 1 "O4'" D DG 34 ? ? "C1'" D DG 34 ? ? N9 D DG 34 ? ? 101.34 108.00 -6.66 0.70 N 38 1 "O4'" D DT 35 ? ? "C1'" D DT 35 ? ? N1 D DT 35 ? ? 102.39 108.00 -5.61 0.70 N 39 1 "O4'" D DC 38 ? ? "C1'" D DC 38 ? ? N1 D DC 38 ? ? 100.57 108.00 -7.43 0.70 N 40 1 "O4'" D DG 39 ? ? "C1'" D DG 39 ? ? N9 D DG 39 ? ? 103.43 108.00 -4.57 0.70 N 41 1 OP1 D DA 40 ? ? P D DA 40 ? ? OP2 D DA 40 ? ? 129.36 119.60 9.76 1.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 NA NA NA N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1L4J 'double helix' 1L4J 'b-form double helix' 1L4J 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 D DA 10 1_555 0.007 -0.107 0.151 2.322 -15.088 7.245 1 A_DT1:DA40_D A 1 ? D 40 ? 20 1 1 A DC 2 1_555 D DG 9 1_555 0.022 -0.211 0.114 6.071 -2.547 -2.720 2 A_DC2:DG39_D A 2 ? D 39 ? 19 1 1 A DG 3 1_555 D DC 8 1_555 -0.354 -0.180 0.310 2.996 -4.062 -3.373 3 A_DG3:DC38_D A 3 ? D 38 ? 19 1 1 A DG 4 1_555 D DC 7 1_555 -0.297 -0.234 0.253 -0.105 -15.895 -0.978 4 A_DG4:DC37_D A 4 ? D 37 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.056 -0.113 0.123 -4.067 -12.756 -2.058 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.354 -0.195 0.232 13.145 -7.337 -4.047 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.205 -0.339 0.138 0.698 -18.295 -2.823 7 A_DC7:DG14_B A 7 ? B 14 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.117 -0.144 0.298 -9.739 3.151 -3.163 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.168 -0.170 0.066 -0.751 -1.256 -2.932 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DA 10 1_555 B DT 1 1_555 0.156 -0.224 0.025 5.376 -13.600 -0.688 10 A_DA10:DT11_B A 10 ? B 11 ? 20 1 1 C DT 1 1_555 B DA 10 1_555 0.061 -0.026 0.027 -3.228 -13.913 1.280 11 C_DT21:DA20_B C 21 ? B 20 ? 20 1 1 C DC 2 1_555 B DG 9 1_555 0.084 -0.181 0.186 2.447 -1.809 -1.864 12 C_DC22:DG19_B C 22 ? B 19 ? 19 1 1 C DG 3 1_555 B DC 8 1_555 -0.190 -0.139 0.312 2.430 -4.029 -1.759 13 C_DG23:DC18_B C 23 ? B 18 ? 19 1 1 C DG 4 1_555 B DC 7 1_555 -0.338 -0.244 0.231 1.435 -13.004 2.351 14 C_DG24:DC17_B C 24 ? B 17 ? 19 1 1 C DT 5 1_555 D DA 6 1_555 -0.275 -0.084 -0.086 -2.827 -10.526 0.328 15 C_DT25:DA36_D C 25 ? D 36 ? 20 1 1 C DA 6 1_555 D DT 5 1_555 0.254 -0.141 0.142 11.941 -12.912 -3.294 16 C_DA26:DT35_D C 26 ? D 35 ? 20 1 1 C DC 7 1_555 D DG 4 1_555 0.218 -0.221 0.218 -1.524 -19.598 -2.210 17 C_DC27:DG34_D C 27 ? D 34 ? 19 1 1 C DC 8 1_555 D DG 3 1_555 0.302 -0.230 0.328 -9.269 5.578 -0.928 18 C_DC28:DG33_D C 28 ? D 33 ? 19 1 1 C DG 9 1_555 D DC 2 1_555 -0.090 -0.165 0.056 -2.805 3.290 -2.547 19 C_DG29:DC32_D C 29 ? D 32 ? 19 1 1 C DA 10 1_555 D DT 1 1_555 -0.003 -0.198 0.146 0.134 -18.541 4.012 20 C_DA30:DT31_D C 30 ? D 31 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 D DA 10 1_555 A DC 2 1_555 D DG 9 1_555 -0.023 2.675 3.494 5.537 6.906 38.992 3.012 0.758 3.855 10.187 -8.167 39.946 1 AA_DT1DC2:DG39DA40_DD A 1 ? D 40 ? A 2 ? D 39 ? 1 A DC 2 1_555 D DG 9 1_555 A DG 3 1_555 D DC 8 1_555 0.459 2.949 3.362 1.808 -1.222 38.495 4.620 -0.468 3.287 -1.852 -2.740 38.555 2 AA_DC2DG3:DC38DG39_DD A 2 ? D 39 ? A 3 ? D 38 ? 1 A DG 3 1_555 D DC 8 1_555 A DG 4 1_555 D DC 7 1_555 -0.178 2.337 3.642 -4.865 3.783 43.318 2.723 -0.294 3.820 5.093 6.551 43.734 3 AA_DG3DG4:DC37DC38_DD A 3 ? D 38 ? A 4 ? D 37 ? 1 A DG 4 1_555 D DC 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.317 -0.363 3.303 0.164 2.339 30.273 -1.166 0.639 3.264 4.470 -0.314 30.362 4 AA_DG4DT5:DA16DC37_BD A 4 ? D 37 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.037 1.447 3.064 -0.934 4.735 33.938 1.736 -0.079 3.230 8.062 1.590 34.270 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DC 7 1_555 B DG 4 1_555 -0.666 0.538 3.642 -1.337 -4.985 40.756 1.367 0.788 3.573 -7.123 1.910 41.068 6 AA_DA6DC7:DG14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 1.237 1.407 3.771 2.611 4.823 35.378 1.460 -1.564 4.000 7.877 -4.265 35.787 7 AA_DC7DC8:DG13DG14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.377 2.520 3.150 2.118 -1.859 39.960 3.880 0.779 3.011 -2.716 -3.094 40.055 8 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DA 10 1_555 B DT 1 1_555 -0.146 1.928 3.477 -3.021 4.768 37.507 2.296 -0.201 3.686 7.364 4.666 37.914 9 AA_DG9DA10:DT11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? 1 C DT 1 1_555 B DA 10 1_555 C DC 2 1_555 B DG 9 1_555 0.412 1.419 3.452 3.784 5.810 36.700 1.377 -0.096 3.649 9.127 -5.944 37.327 10 CC_DT21DC22:DG19DA20_BB C 21 ? B 20 ? C 22 ? B 19 ? 1 C DC 2 1_555 B DG 9 1_555 C DG 3 1_555 B DC 8 1_555 0.147 2.496 3.316 2.257 -1.728 37.964 4.046 0.061 3.207 -2.652 -3.464 38.067 11 CC_DC22DG23:DC18DG19_BB C 22 ? B 19 ? C 23 ? B 18 ? 1 C DG 3 1_555 B DC 8 1_555 C DG 4 1_555 B DC 7 1_555 -0.139 2.335 3.607 -3.958 4.233 40.829 2.796 -0.290 3.816 6.031 5.639 41.221 12 CC_DG23DG24:DC17DC18_BB C 23 ? B 18 ? C 24 ? B 17 ? 1 C DG 4 1_555 B DC 7 1_555 C DT 5 1_555 D DA 6 1_555 -0.635 -0.587 3.252 1.921 4.127 27.790 -2.148 1.745 3.084 8.520 -3.966 28.153 13 CC_DG24DT25:DA36DC17_DB C 24 ? B 17 ? C 25 ? D 36 ? 1 C DT 5 1_555 D DA 6 1_555 C DA 6 1_555 D DT 5 1_555 -0.148 1.506 3.130 0.303 5.079 32.105 1.809 0.316 3.321 9.113 -0.544 32.495 14 CC_DT25DA26:DT35DA36_DD C 25 ? D 36 ? C 26 ? D 35 ? 1 C DA 6 1_555 D DT 5 1_555 C DC 7 1_555 D DG 4 1_555 -0.584 0.747 3.539 -1.986 0.428 42.554 0.981 0.587 3.569 0.589 2.734 42.601 15 CC_DA26DC27:DG34DT35_DD C 26 ? D 35 ? C 27 ? D 34 ? 1 C DC 7 1_555 D DG 4 1_555 C DC 8 1_555 D DG 3 1_555 1.299 1.548 3.752 2.498 3.115 39.174 1.863 -1.580 3.931 4.631 -3.714 39.369 16 CC_DC27DC28:DG33DG34_DD C 27 ? D 34 ? C 28 ? D 33 ? 1 C DC 8 1_555 D DG 3 1_555 C DG 9 1_555 D DC 2 1_555 -0.349 2.524 3.252 1.325 -0.213 37.498 3.952 0.713 3.224 -0.331 -2.061 37.521 17 CC_DC28DG29:DC32DG33_DD C 28 ? D 33 ? C 29 ? D 32 ? 1 C DG 9 1_555 D DC 2 1_555 C DA 10 1_555 D DT 1 1_555 -0.284 2.448 3.462 -4.023 6.908 40.505 2.638 -0.084 3.821 9.862 5.743 41.254 18 CC_DG29DA30:DT31DC32_DD C 29 ? D 32 ? C 30 ? D 31 ? # _atom_sites.entry_id 1L4J _atom_sites.fract_transf_matrix[1][1] 0.015136 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005682 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.042061 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014470 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N NA O P # loop_