data_1L5Z # _entry.id 1L5Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1L5Z pdb_00001l5z 10.2210/pdb1l5z/pdb RCSB RCSB015677 ? ? WWPDB D_1000015677 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1QKK 'CRYSTAL STRUCTURE OF THE RECEIVER DOMAIN AND LINKER REGION OF DCTD FROM SINORHIZOBIUM MELILOTI' unspecified PDB 1L5Y 'CRYSTAL STRUCTURE OF MG2+ / BEF3- BOUND RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1L5Z _pdbx_database_status.recvd_initial_deposition_date 2002-03-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Park, S.' 1 'Meyer, M.' 2 'Jones, A.D.' 3 'Yennawar, H.P.' 4 'Yennawar, N.H.' 5 'Nixon, B.T.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Two-component signaling in the AAA + ATPase DctD: binding Mg2+ and BeF3- selects between alternate dimeric states of the receiver domain ; 'FASEB J.' 16 1964 1966 2002 FAJOEC US 0892-6638 2074 ? 12368235 ? 1 'A dimeric two-component receiver domain inhibits the sigma54-dependent ATPase in DctD' 'FASEB J.' 15 1326 1328 2001 FAJOEC US 0892-6638 2074 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Park, S.' 1 ? primary 'Meyer, M.' 2 ? primary 'Jones, A.D.' 3 ? primary 'Yennawar, H.P.' 4 ? primary 'Yennawar, N.H.' 5 ? primary 'Nixon, B.T.' 6 ? 1 'Meyer, M.G.' 7 ? 1 'Park, S.' 8 ? 1 'Zeringue, L.' 9 ? 1 'Staley, M.' 10 ? 1 'McKinstry, M.' 11 ? 1 'Kaufman, R.I.' 12 ? 1 'Zhang, H.' 13 ? 1 'Yan, D.' 14 ? 1 'Yennawar, N.' 15 ? 1 'Yennawar, H.' 16 ? 1 'Farber, G.K.' 17 ? 1 'Nixon, B.T.' 18 ? # _cell.entry_id 1L5Z _cell.length_a 57.129 _cell.length_b 58.139 _cell.length_c 168.824 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L5Z _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD' 16821.326 1 ? E121K 'RECEIVER DOMAIN, RESIDUES 2-143' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 4 water nat water 18.015 144 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name DctDNL # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SAAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMIL VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEKKRRLVMENRSLRRAAEAASEGLKLAAALEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;SAAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMIL VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEKKRRLVMENRSLRRAAEAASEGLKLAAALEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 ALA n 1 4 PRO n 1 5 SER n 1 6 VAL n 1 7 PHE n 1 8 LEU n 1 9 ILE n 1 10 ASP n 1 11 ASP n 1 12 ASP n 1 13 ARG n 1 14 ASP n 1 15 LEU n 1 16 ARG n 1 17 LYS n 1 18 ALA n 1 19 MET n 1 20 GLN n 1 21 GLN n 1 22 THR n 1 23 LEU n 1 24 GLU n 1 25 LEU n 1 26 ALA n 1 27 GLY n 1 28 PHE n 1 29 THR n 1 30 VAL n 1 31 SER n 1 32 SER n 1 33 PHE n 1 34 ALA n 1 35 SER n 1 36 ALA n 1 37 THR n 1 38 GLU n 1 39 ALA n 1 40 LEU n 1 41 ALA n 1 42 GLY n 1 43 LEU n 1 44 SER n 1 45 ALA n 1 46 ASP n 1 47 PHE n 1 48 ALA n 1 49 GLY n 1 50 ILE n 1 51 VAL n 1 52 ILE n 1 53 SER n 1 54 ASP n 1 55 ILE n 1 56 ARG n 1 57 MET n 1 58 PRO n 1 59 GLY n 1 60 MET n 1 61 ASP n 1 62 GLY n 1 63 LEU n 1 64 ALA n 1 65 LEU n 1 66 PHE n 1 67 ARG n 1 68 LYS n 1 69 ILE n 1 70 LEU n 1 71 ALA n 1 72 LEU n 1 73 ASP n 1 74 PRO n 1 75 ASP n 1 76 LEU n 1 77 PRO n 1 78 MET n 1 79 ILE n 1 80 LEU n 1 81 VAL n 1 82 THR n 1 83 GLY n 1 84 HIS n 1 85 GLY n 1 86 ASP n 1 87 ILE n 1 88 PRO n 1 89 MET n 1 90 ALA n 1 91 VAL n 1 92 GLN n 1 93 ALA n 1 94 ILE n 1 95 GLN n 1 96 ASP n 1 97 GLY n 1 98 ALA n 1 99 TYR n 1 100 ASP n 1 101 PHE n 1 102 ILE n 1 103 ALA n 1 104 LYS n 1 105 PRO n 1 106 PHE n 1 107 ALA n 1 108 ALA n 1 109 ASP n 1 110 ARG n 1 111 LEU n 1 112 VAL n 1 113 GLN n 1 114 SER n 1 115 ALA n 1 116 ARG n 1 117 ARG n 1 118 ALA n 1 119 GLU n 1 120 LYS n 1 121 LYS n 1 122 ARG n 1 123 ARG n 1 124 LEU n 1 125 VAL n 1 126 MET n 1 127 GLU n 1 128 ASN n 1 129 ARG n 1 130 SER n 1 131 LEU n 1 132 ARG n 1 133 ARG n 1 134 ALA n 1 135 ALA n 1 136 GLU n 1 137 ALA n 1 138 ALA n 1 139 SER n 1 140 GLU n 1 141 GLY n 1 142 LEU n 1 143 LYS n 1 144 LEU n 1 145 ALA n 1 146 ALA n 1 147 ALA n 1 148 LEU n 1 149 GLU n 1 150 HIS n 1 151 HIS n 1 152 HIS n 1 153 HIS n 1 154 HIS n 1 155 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sinorhizobium _entity_src_gen.pdbx_gene_src_gene dctD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sinorhizobium meliloti' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 382 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21/De3/pLysS _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pT143E121K _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCTD_RHIME _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSAAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMI LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRLVMENRSLRRAAEAASEGL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P13632 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1L5Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 142 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P13632 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 143 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 143 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1L5Z LYS A 120 ? UNP P13632 GLU 121 'engineered mutation' 121 1 1 1L5Z LYS A 143 ? UNP P13632 ? ? 'expression tag' 144 2 1 1L5Z LEU A 144 ? UNP P13632 ? ? 'expression tag' 145 3 1 1L5Z ALA A 145 ? UNP P13632 ? ? 'expression tag' 146 4 1 1L5Z ALA A 146 ? UNP P13632 ? ? 'expression tag' 147 5 1 1L5Z ALA A 147 ? UNP P13632 ? ? 'expression tag' 148 6 1 1L5Z LEU A 148 ? UNP P13632 ? ? 'expression tag' 149 7 1 1L5Z GLU A 149 ? UNP P13632 ? ? 'expression tag' 150 8 1 1L5Z HIS A 150 ? UNP P13632 ? ? 'expression tag' 151 9 1 1L5Z HIS A 151 ? UNP P13632 ? ? 'expression tag' 152 10 1 1L5Z HIS A 152 ? UNP P13632 ? ? 'expression tag' 153 11 1 1L5Z HIS A 153 ? UNP P13632 ? ? 'expression tag' 154 12 1 1L5Z HIS A 154 ? UNP P13632 ? ? 'expression tag' 155 13 1 1L5Z HIS A 155 ? UNP P13632 ? ? 'expression tag' 156 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1L5Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 70.47 _exptl_crystal.density_Matthews 4.17 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'HEPES, lithium sulfate, PEG 8000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2001-09-30 _diffrn_detector.details 'MSC Blue Confocal Optical System' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'MSC Blue Confocal Optical System' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1L5Z _reflns.observed_criterion_sigma_I 2.2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 36.7 _reflns.d_resolution_high 2.0 _reflns.number_obs 19264 _reflns.number_all 19264 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.1 _reflns.B_iso_Wilson_estimate 16.6 _reflns.pdbx_redundancy 3.04 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 97.5 _reflns_shell.Rmerge_I_obs 0.222 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 1.61 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3548 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1L5Z _refine.ls_number_reflns_obs 19264 _refine.ls_number_reflns_all 19264 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 215180.43 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 36.70 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 98.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.232 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1897 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 22.4 _refine.aniso_B[1][1] -0.67 _refine.aniso_B[2][2] -1.10 _refine.aniso_B[3][3] 1.77 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.385197 _refine.solvent_model_param_bsol 66.2093 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1QKK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1L5Z _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.19 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1090 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 1263 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 36.70 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.99 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.41 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.96 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.00 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.92 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2818 _refine_ls_shell.R_factor_R_work 0.246 _refine_ls_shell.percent_reflns_obs 98.4 _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 10.1 _refine_ls_shell.number_reflns_R_free 318 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP1.PARAM ? 'X-RAY DIFFRACTION' 2 WATER.PARAM ? 'X-RAY DIFFRACTION' 3 ION.PARAM ? 'X-RAY DIFFRACTION' 4 CRY.PARAM ? 'X-RAY DIFFRACTION' 5 ? ? 'X-RAY DIFFRACTION' # _struct.entry_id 1L5Z _struct.title 'CRYSTAL STRUCTURE OF THE E121K SUBSTITUTION OF THE RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1L5Z _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text 'two component receiver domain, sigma 54, regulator of AAA+ ATPase, TRANSCRIPTION REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ;analytical ultracentrifuge data indicates solution form is a dimer; genetic and biochemical data indicates substitution destabilizes the dimer ~20-fold, leading to 'derepression' of the ATPase domain asymmetric unit is a monomer biological unit is a dimer - build with symmetry operation -X, -Y, Z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 12 ? LEU A 25 ? ASP A 13 LEU A 26 1 ? 14 HELX_P HELX_P2 2 SER A 35 ? GLY A 42 ? SER A 36 GLY A 43 1 ? 8 HELX_P HELX_P3 3 ASP A 61 ? ASP A 73 ? ASP A 62 ASP A 74 1 ? 13 HELX_P HELX_P4 4 GLY A 83 ? GLY A 85 ? GLY A 84 GLY A 86 5 ? 3 HELX_P HELX_P5 5 ASP A 86 ? ASP A 96 ? ASP A 87 ASP A 97 1 ? 11 HELX_P HELX_P6 6 ALA A 107 ? ALA A 146 ? ALA A 108 ALA A 147 1 ? 40 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? B SO4 . S ? ? ? 1_555 B SO4 . O1 ? ? A SO4 201 A SO4 201 1_555 ? ? ? ? ? ? ? 1.462 ? ? covale2 covale none ? B SO4 . S ? ? ? 1_555 B SO4 . O2 ? ? A SO4 201 A SO4 201 1_555 ? ? ? ? ? ? ? 1.464 ? ? covale3 covale none ? B SO4 . S ? ? ? 1_555 B SO4 . O3 ? ? A SO4 201 A SO4 201 1_555 ? ? ? ? ? ? ? 1.470 ? ? covale4 covale none ? B SO4 . S ? ? ? 1_555 B SO4 . O4 ? ? A SO4 201 A SO4 201 1_555 ? ? ? ? ? ? ? 1.477 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 104 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 105 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 105 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 106 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.59 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 29 ? PHE A 33 ? THR A 30 PHE A 34 A 2 SER A 5 ? ILE A 9 ? SER A 6 ILE A 10 A 3 ILE A 50 ? ASP A 54 ? ILE A 51 ASP A 55 A 4 MET A 78 ? THR A 82 ? MET A 79 THR A 83 A 5 ASP A 100 ? ALA A 103 ? ASP A 101 ALA A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 31 ? O SER A 32 N VAL A 6 ? N VAL A 7 A 2 3 N ILE A 9 ? N ILE A 10 O ILE A 52 ? O ILE A 53 A 3 4 N VAL A 51 ? N VAL A 52 O ILE A 79 ? O ILE A 80 A 4 5 N THR A 82 ? N THR A 83 O ILE A 102 ? O ILE A 103 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 6 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software A GOL 501 ? 5 'BINDING SITE FOR RESIDUE GOL A 501' AC3 Software A GOL 502 ? 5 'BINDING SITE FOR RESIDUE GOL A 502' AC4 Software A GOL 503 ? 8 'BINDING SITE FOR RESIDUE GOL A 503' AC5 Software A GOL 504 ? 5 'BINDING SITE FOR RESIDUE GOL A 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ARG A 13 ? ARG A 14 . ? 1_555 ? 2 AC1 6 ARG A 13 ? ARG A 14 . ? 2_555 ? 3 AC1 6 ARG A 16 ? ARG A 17 . ? 2_555 ? 4 AC1 6 ARG A 16 ? ARG A 17 . ? 1_555 ? 5 AC1 6 HOH G . ? HOH A 574 . ? 2_555 ? 6 AC1 6 HOH G . ? HOH A 574 . ? 1_555 ? 7 AC2 5 ARG A 56 ? ARG A 57 . ? 1_555 ? 8 AC2 5 GLY A 83 ? GLY A 84 . ? 1_555 ? 9 AC2 5 HIS A 84 ? HIS A 85 . ? 1_555 ? 10 AC2 5 GLY A 85 ? GLY A 86 . ? 1_555 ? 11 AC2 5 ASP A 86 ? ASP A 87 . ? 1_555 ? 12 AC3 5 GLN A 21 ? GLN A 22 . ? 1_555 ? 13 AC3 5 ARG A 67 ? ARG A 68 . ? 8_455 ? 14 AC3 5 GLN A 92 ? GLN A 93 . ? 8_455 ? 15 AC3 5 ALA A 93 ? ALA A 94 . ? 8_455 ? 16 AC3 5 ASP A 96 ? ASP A 97 . ? 8_455 ? 17 AC4 8 ILE A 94 ? ILE A 95 . ? 2_565 ? 18 AC4 8 ASP A 100 ? ASP A 101 . ? 2_565 ? 19 AC4 8 ARG A 110 ? ARG A 111 . ? 1_555 ? 20 AC4 8 GLN A 113 ? GLN A 114 . ? 1_555 ? 21 AC4 8 SER A 114 ? SER A 115 . ? 1_555 ? 22 AC4 8 ARG A 117 ? ARG A 118 . ? 1_555 ? 23 AC4 8 HOH G . ? HOH A 559 . ? 2_565 ? 24 AC4 8 HOH G . ? HOH A 559 . ? 1_555 ? 25 AC5 5 HIS A 84 ? HIS A 85 . ? 1_555 ? 26 AC5 5 ILE A 87 ? ILE A 88 . ? 1_555 ? 27 AC5 5 PRO A 88 ? PRO A 89 . ? 1_555 ? 28 AC5 5 ARG A 110 ? ARG A 111 . ? 2_565 ? 29 AC5 5 HOH G . ? HOH A 532 . ? 2_565 ? # _database_PDB_matrix.entry_id 1L5Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1L5Z _atom_sites.fract_transf_matrix[1][1] 0.017504 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017200 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005923 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 ALA 2 3 3 ALA ALA A . n A 1 3 ALA 3 4 4 ALA ALA A . n A 1 4 PRO 4 5 5 PRO PRO A . n A 1 5 SER 5 6 6 SER SER A . n A 1 6 VAL 6 7 7 VAL VAL A . n A 1 7 PHE 7 8 8 PHE PHE A . n A 1 8 LEU 8 9 9 LEU LEU A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 ASP 10 11 11 ASP ASP A . n A 1 11 ASP 11 12 12 ASP ASP A . n A 1 12 ASP 12 13 13 ASP ASP A . n A 1 13 ARG 13 14 14 ARG ARG A . n A 1 14 ASP 14 15 15 ASP ASP A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 ARG 16 17 17 ARG ARG A . n A 1 17 LYS 17 18 18 LYS LYS A . n A 1 18 ALA 18 19 19 ALA ALA A . n A 1 19 MET 19 20 20 MET MET A . n A 1 20 GLN 20 21 21 GLN GLN A . n A 1 21 GLN 21 22 22 GLN GLN A . n A 1 22 THR 22 23 23 THR THR A . n A 1 23 LEU 23 24 24 LEU LEU A . n A 1 24 GLU 24 25 25 GLU GLU A . n A 1 25 LEU 25 26 26 LEU LEU A . n A 1 26 ALA 26 27 27 ALA ALA A . n A 1 27 GLY 27 28 28 GLY GLY A . n A 1 28 PHE 28 29 29 PHE PHE A . n A 1 29 THR 29 30 30 THR THR A . n A 1 30 VAL 30 31 31 VAL VAL A . n A 1 31 SER 31 32 32 SER SER A . n A 1 32 SER 32 33 33 SER SER A . n A 1 33 PHE 33 34 34 PHE PHE A . n A 1 34 ALA 34 35 35 ALA ALA A . n A 1 35 SER 35 36 36 SER SER A . n A 1 36 ALA 36 37 37 ALA ALA A . n A 1 37 THR 37 38 38 THR THR A . n A 1 38 GLU 38 39 39 GLU GLU A . n A 1 39 ALA 39 40 40 ALA ALA A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 ALA 41 42 42 ALA ALA A . n A 1 42 GLY 42 43 43 GLY GLY A . n A 1 43 LEU 43 44 44 LEU LEU A . n A 1 44 SER 44 45 45 SER SER A . n A 1 45 ALA 45 46 46 ALA ALA A . n A 1 46 ASP 46 47 47 ASP ASP A . n A 1 47 PHE 47 48 48 PHE PHE A . n A 1 48 ALA 48 49 49 ALA ALA A . n A 1 49 GLY 49 50 50 GLY GLY A . n A 1 50 ILE 50 51 51 ILE ILE A . n A 1 51 VAL 51 52 52 VAL VAL A . n A 1 52 ILE 52 53 53 ILE ILE A . n A 1 53 SER 53 54 54 SER SER A . n A 1 54 ASP 54 55 55 ASP ASP A . n A 1 55 ILE 55 56 56 ILE ILE A . n A 1 56 ARG 56 57 57 ARG ARG A . n A 1 57 MET 57 58 58 MET MET A . n A 1 58 PRO 58 59 59 PRO PRO A . n A 1 59 GLY 59 60 60 GLY GLY A . n A 1 60 MET 60 61 61 MET MET A . n A 1 61 ASP 61 62 62 ASP ASP A . n A 1 62 GLY 62 63 63 GLY GLY A . n A 1 63 LEU 63 64 64 LEU LEU A . n A 1 64 ALA 64 65 65 ALA ALA A . n A 1 65 LEU 65 66 66 LEU LEU A . n A 1 66 PHE 66 67 67 PHE PHE A . n A 1 67 ARG 67 68 68 ARG ARG A . n A 1 68 LYS 68 69 69 LYS LYS A . n A 1 69 ILE 69 70 70 ILE ILE A . n A 1 70 LEU 70 71 71 LEU LEU A . n A 1 71 ALA 71 72 72 ALA ALA A . n A 1 72 LEU 72 73 73 LEU LEU A . n A 1 73 ASP 73 74 74 ASP ASP A . n A 1 74 PRO 74 75 75 PRO PRO A . n A 1 75 ASP 75 76 76 ASP ASP A . n A 1 76 LEU 76 77 77 LEU LEU A . n A 1 77 PRO 77 78 78 PRO PRO A . n A 1 78 MET 78 79 79 MET MET A . n A 1 79 ILE 79 80 80 ILE ILE A . n A 1 80 LEU 80 81 81 LEU LEU A . n A 1 81 VAL 81 82 82 VAL VAL A . n A 1 82 THR 82 83 83 THR THR A . n A 1 83 GLY 83 84 84 GLY GLY A . n A 1 84 HIS 84 85 85 HIS HIS A . n A 1 85 GLY 85 86 86 GLY GLY A . n A 1 86 ASP 86 87 87 ASP ASP A . n A 1 87 ILE 87 88 88 ILE ILE A . n A 1 88 PRO 88 89 89 PRO PRO A . n A 1 89 MET 89 90 90 MET MET A . n A 1 90 ALA 90 91 91 ALA ALA A . n A 1 91 VAL 91 92 92 VAL VAL A . n A 1 92 GLN 92 93 93 GLN GLN A . n A 1 93 ALA 93 94 94 ALA ALA A . n A 1 94 ILE 94 95 95 ILE ILE A . n A 1 95 GLN 95 96 96 GLN GLN A . n A 1 96 ASP 96 97 97 ASP ASP A . n A 1 97 GLY 97 98 98 GLY GLY A . n A 1 98 ALA 98 99 99 ALA ALA A . n A 1 99 TYR 99 100 100 TYR TYR A . n A 1 100 ASP 100 101 101 ASP ASP A . n A 1 101 PHE 101 102 102 PHE PHE A . n A 1 102 ILE 102 103 103 ILE ILE A . n A 1 103 ALA 103 104 104 ALA ALA A . n A 1 104 LYS 104 105 105 LYS LYS A . n A 1 105 PRO 105 106 106 PRO PRO A . n A 1 106 PHE 106 107 107 PHE PHE A . n A 1 107 ALA 107 108 108 ALA ALA A . n A 1 108 ALA 108 109 109 ALA ALA A . n A 1 109 ASP 109 110 110 ASP ASP A . n A 1 110 ARG 110 111 111 ARG ARG A . n A 1 111 LEU 111 112 112 LEU LEU A . n A 1 112 VAL 112 113 113 VAL VAL A . n A 1 113 GLN 113 114 114 GLN GLN A . n A 1 114 SER 114 115 115 SER SER A . n A 1 115 ALA 115 116 116 ALA ALA A . n A 1 116 ARG 116 117 117 ARG ARG A . n A 1 117 ARG 117 118 118 ARG ARG A . n A 1 118 ALA 118 119 119 ALA ALA A . n A 1 119 GLU 119 120 120 GLU GLU A . n A 1 120 LYS 120 121 121 LYS LYS A . n A 1 121 LYS 121 122 122 LYS LYS A . n A 1 122 ARG 122 123 123 ARG ARG A . n A 1 123 ARG 123 124 124 ARG ARG A . n A 1 124 LEU 124 125 125 LEU LEU A . n A 1 125 VAL 125 126 126 VAL VAL A . n A 1 126 MET 126 127 127 MET MET A . n A 1 127 GLU 127 128 128 GLU GLU A . n A 1 128 ASN 128 129 129 ASN ASN A . n A 1 129 ARG 129 130 130 ARG ARG A . n A 1 130 SER 130 131 131 SER SER A . n A 1 131 LEU 131 132 132 LEU LEU A . n A 1 132 ARG 132 133 133 ARG ARG A . n A 1 133 ARG 133 134 134 ARG ARG A . n A 1 134 ALA 134 135 135 ALA ALA A . n A 1 135 ALA 135 136 136 ALA ALA A . n A 1 136 GLU 136 137 137 GLU GLU A . n A 1 137 ALA 137 138 138 ALA ALA A . n A 1 138 ALA 138 139 139 ALA ALA A . n A 1 139 SER 139 140 140 SER SER A . n A 1 140 GLU 140 141 141 GLU GLU A . n A 1 141 GLY 141 142 142 GLY GLY A . n A 1 142 LEU 142 143 143 LEU LEU A . n A 1 143 LYS 143 144 144 LYS ALA A . n A 1 144 LEU 144 145 145 LEU ALA A . n A 1 145 ALA 145 146 146 ALA ALA A . n A 1 146 ALA 146 147 147 ALA ALA A . n A 1 147 ALA 147 148 ? ? ? A . n A 1 148 LEU 148 149 ? ? ? A . n A 1 149 GLU 149 150 ? ? ? A . n A 1 150 HIS 150 151 ? ? ? A . n A 1 151 HIS 151 152 ? ? ? A . n A 1 152 HIS 152 153 ? ? ? A . n A 1 153 HIS 153 154 ? ? ? A . n A 1 154 HIS 154 155 ? ? ? A . n A 1 155 HIS 155 156 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 1 SO4 SO4 A . C 3 GOL 1 501 501 GOL CRY A . D 3 GOL 1 502 502 GOL CRY A . E 3 GOL 1 503 503 GOL CRY A . F 3 GOL 1 504 504 GOL CRY A . G 4 HOH 1 505 1 HOH HOH A . G 4 HOH 2 506 2 HOH HOH A . G 4 HOH 3 507 3 HOH HOH A . G 4 HOH 4 508 4 HOH HOH A . G 4 HOH 5 509 5 HOH HOH A . G 4 HOH 6 510 6 HOH HOH A . G 4 HOH 7 511 7 HOH HOH A . G 4 HOH 8 512 8 HOH HOH A . G 4 HOH 9 513 9 HOH HOH A . G 4 HOH 10 514 10 HOH HOH A . G 4 HOH 11 515 11 HOH HOH A . G 4 HOH 12 516 12 HOH HOH A . G 4 HOH 13 517 13 HOH HOH A . G 4 HOH 14 518 14 HOH HOH A . G 4 HOH 15 519 15 HOH HOH A . G 4 HOH 16 520 16 HOH HOH A . G 4 HOH 17 521 17 HOH HOH A . G 4 HOH 18 522 18 HOH HOH A . G 4 HOH 19 523 19 HOH HOH A . G 4 HOH 20 524 20 HOH HOH A . G 4 HOH 21 525 21 HOH HOH A . G 4 HOH 22 526 22 HOH HOH A . G 4 HOH 23 527 23 HOH HOH A . G 4 HOH 24 528 24 HOH HOH A . G 4 HOH 25 529 25 HOH HOH A . G 4 HOH 26 530 26 HOH HOH A . G 4 HOH 27 531 27 HOH HOH A . G 4 HOH 28 532 28 HOH HOH A . G 4 HOH 29 533 29 HOH HOH A . G 4 HOH 30 534 30 HOH HOH A . G 4 HOH 31 535 31 HOH HOH A . G 4 HOH 32 536 32 HOH HOH A . G 4 HOH 33 537 33 HOH HOH A . G 4 HOH 34 538 34 HOH HOH A . G 4 HOH 35 539 35 HOH HOH A . G 4 HOH 36 540 36 HOH HOH A . G 4 HOH 37 541 37 HOH HOH A . G 4 HOH 38 542 38 HOH HOH A . G 4 HOH 39 543 39 HOH HOH A . G 4 HOH 40 544 40 HOH HOH A . G 4 HOH 41 545 41 HOH HOH A . G 4 HOH 42 546 42 HOH HOH A . G 4 HOH 43 547 43 HOH HOH A . G 4 HOH 44 548 44 HOH HOH A . G 4 HOH 45 549 45 HOH HOH A . G 4 HOH 46 550 46 HOH HOH A . G 4 HOH 47 551 47 HOH HOH A . G 4 HOH 48 552 48 HOH HOH A . G 4 HOH 49 553 49 HOH HOH A . G 4 HOH 50 554 50 HOH HOH A . G 4 HOH 51 555 51 HOH HOH A . G 4 HOH 52 556 52 HOH HOH A . G 4 HOH 53 557 53 HOH HOH A . G 4 HOH 54 558 54 HOH HOH A . G 4 HOH 55 559 55 HOH HOH A . G 4 HOH 56 560 56 HOH HOH A . G 4 HOH 57 561 57 HOH HOH A . G 4 HOH 58 562 58 HOH HOH A . G 4 HOH 59 563 59 HOH HOH A . G 4 HOH 60 564 60 HOH HOH A . G 4 HOH 61 565 61 HOH HOH A . G 4 HOH 62 566 62 HOH HOH A . G 4 HOH 63 567 63 HOH HOH A . G 4 HOH 64 568 64 HOH HOH A . G 4 HOH 65 569 65 HOH HOH A . G 4 HOH 66 570 66 HOH HOH A . G 4 HOH 67 571 67 HOH HOH A . G 4 HOH 68 572 68 HOH HOH A . G 4 HOH 69 573 69 HOH HOH A . G 4 HOH 70 574 70 HOH HOH A . G 4 HOH 71 575 71 HOH HOH A . G 4 HOH 72 576 72 HOH HOH A . G 4 HOH 73 577 73 HOH HOH A . G 4 HOH 74 578 74 HOH HOH A . G 4 HOH 75 579 75 HOH HOH A . G 4 HOH 76 580 76 HOH HOH A . G 4 HOH 77 581 77 HOH HOH A . G 4 HOH 78 582 78 HOH HOH A . G 4 HOH 79 583 79 HOH HOH A . G 4 HOH 80 584 80 HOH HOH A . G 4 HOH 81 585 81 HOH HOH A . G 4 HOH 82 586 82 HOH HOH A . G 4 HOH 83 587 83 HOH HOH A . G 4 HOH 84 588 84 HOH HOH A . G 4 HOH 85 589 85 HOH HOH A . G 4 HOH 86 590 86 HOH HOH A . G 4 HOH 87 591 87 HOH HOH A . G 4 HOH 88 592 88 HOH HOH A . G 4 HOH 89 593 89 HOH HOH A . G 4 HOH 90 594 90 HOH HOH A . G 4 HOH 91 595 91 HOH HOH A . G 4 HOH 92 596 92 HOH HOH A . G 4 HOH 93 597 93 HOH HOH A . G 4 HOH 94 598 94 HOH HOH A . G 4 HOH 95 599 95 HOH HOH A . G 4 HOH 96 600 96 HOH HOH A . G 4 HOH 97 601 97 HOH HOH A . G 4 HOH 98 602 98 HOH HOH A . G 4 HOH 99 603 99 HOH HOH A . G 4 HOH 100 604 100 HOH HOH A . G 4 HOH 101 605 101 HOH HOH A . G 4 HOH 102 606 102 HOH HOH A . G 4 HOH 103 607 103 HOH HOH A . G 4 HOH 104 608 104 HOH HOH A . G 4 HOH 105 609 105 HOH HOH A . G 4 HOH 106 610 106 HOH HOH A . G 4 HOH 107 611 107 HOH HOH A . G 4 HOH 108 612 108 HOH HOH A . G 4 HOH 109 613 109 HOH HOH A . G 4 HOH 110 614 110 HOH HOH A . G 4 HOH 111 615 111 HOH HOH A . G 4 HOH 112 616 112 HOH HOH A . G 4 HOH 113 617 114 HOH HOH A . G 4 HOH 114 618 115 HOH HOH A . G 4 HOH 115 619 116 HOH HOH A . G 4 HOH 116 620 117 HOH HOH A . G 4 HOH 117 621 118 HOH HOH A . G 4 HOH 118 622 119 HOH HOH A . G 4 HOH 119 623 120 HOH HOH A . G 4 HOH 120 624 121 HOH HOH A . G 4 HOH 121 625 122 HOH HOH A . G 4 HOH 122 626 123 HOH HOH A . G 4 HOH 123 627 124 HOH HOH A . G 4 HOH 124 628 125 HOH HOH A . G 4 HOH 125 629 126 HOH HOH A . G 4 HOH 126 630 127 HOH HOH A . G 4 HOH 127 631 128 HOH HOH A . G 4 HOH 128 632 129 HOH HOH A . G 4 HOH 129 633 130 HOH HOH A . G 4 HOH 130 634 131 HOH HOH A . G 4 HOH 131 635 132 HOH HOH A . G 4 HOH 132 636 133 HOH HOH A . G 4 HOH 133 637 134 HOH HOH A . G 4 HOH 134 638 135 HOH HOH A . G 4 HOH 135 639 136 HOH HOH A . G 4 HOH 136 640 137 HOH HOH A . G 4 HOH 137 641 138 HOH HOH A . G 4 HOH 138 642 139 HOH HOH A . G 4 HOH 139 643 140 HOH HOH A . G 4 HOH 140 644 141 HOH HOH A . G 4 HOH 141 645 142 HOH HOH A . G 4 HOH 142 646 143 HOH HOH A . G 4 HOH 143 647 144 HOH HOH A . G 4 HOH 144 648 145 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA,PQS tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G 2 1,2,3,4 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 10020 ? 2 MORE -35 ? 2 'SSA (A^2)' 25400 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 58.1390000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 58.1390000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 201 ? B SO4 . 2 1 A HOH 574 ? G HOH . 3 1 A HOH 578 ? G HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-10-23 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 5 'Structure model' 1 4 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 d*TREK 'data reduction' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.0 ? 4 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 5 d*TREK 'data scaling' . ? 6 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 ND2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 129 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 ND2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ASN _pdbx_validate_symm_contact.auth_seq_id_2 129 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_565 _pdbx_validate_symm_contact.dist 1.59 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 74 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -172.85 _pdbx_validate_torsion.psi 106.55 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 144 ? CG ? A LYS 143 CG 2 1 Y 1 A LYS 144 ? CD ? A LYS 143 CD 3 1 Y 1 A LYS 144 ? CE ? A LYS 143 CE 4 1 Y 1 A LYS 144 ? NZ ? A LYS 143 NZ 5 1 Y 1 A LEU 145 ? CG ? A LEU 144 CG 6 1 Y 1 A LEU 145 ? CD1 ? A LEU 144 CD1 7 1 Y 1 A LEU 145 ? CD2 ? A LEU 144 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 148 ? A ALA 147 2 1 Y 1 A LEU 149 ? A LEU 148 3 1 Y 1 A GLU 150 ? A GLU 149 4 1 Y 1 A HIS 151 ? A HIS 150 5 1 Y 1 A HIS 152 ? A HIS 151 6 1 Y 1 A HIS 153 ? A HIS 152 7 1 Y 1 A HIS 154 ? A HIS 153 8 1 Y 1 A HIS 155 ? A HIS 154 9 1 Y 1 A HIS 156 ? A HIS 155 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 GOL C1 C N N 123 GOL O1 O N N 124 GOL C2 C N N 125 GOL O2 O N N 126 GOL C3 C N N 127 GOL O3 O N N 128 GOL H11 H N N 129 GOL H12 H N N 130 GOL HO1 H N N 131 GOL H2 H N N 132 GOL HO2 H N N 133 GOL H31 H N N 134 GOL H32 H N N 135 GOL HO3 H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SO4 S S N N 304 SO4 O1 O N N 305 SO4 O2 O N N 306 SO4 O3 O N N 307 SO4 O4 O N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TYR N N N N 326 TYR CA C N S 327 TYR C C N N 328 TYR O O N N 329 TYR CB C N N 330 TYR CG C Y N 331 TYR CD1 C Y N 332 TYR CD2 C Y N 333 TYR CE1 C Y N 334 TYR CE2 C Y N 335 TYR CZ C Y N 336 TYR OH O N N 337 TYR OXT O N N 338 TYR H H N N 339 TYR H2 H N N 340 TYR HA H N N 341 TYR HB2 H N N 342 TYR HB3 H N N 343 TYR HD1 H N N 344 TYR HD2 H N N 345 TYR HE1 H N N 346 TYR HE2 H N N 347 TYR HH H N N 348 TYR HXT H N N 349 VAL N N N N 350 VAL CA C N S 351 VAL C C N N 352 VAL O O N N 353 VAL CB C N N 354 VAL CG1 C N N 355 VAL CG2 C N N 356 VAL OXT O N N 357 VAL H H N N 358 VAL H2 H N N 359 VAL HA H N N 360 VAL HB H N N 361 VAL HG11 H N N 362 VAL HG12 H N N 363 VAL HG13 H N N 364 VAL HG21 H N N 365 VAL HG22 H N N 366 VAL HG23 H N N 367 VAL HXT H N N 368 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 GOL C1 O1 sing N N 116 GOL C1 C2 sing N N 117 GOL C1 H11 sing N N 118 GOL C1 H12 sing N N 119 GOL O1 HO1 sing N N 120 GOL C2 O2 sing N N 121 GOL C2 C3 sing N N 122 GOL C2 H2 sing N N 123 GOL O2 HO2 sing N N 124 GOL C3 O3 sing N N 125 GOL C3 H31 sing N N 126 GOL C3 H32 sing N N 127 GOL O3 HO3 sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SO4 S O1 doub N N 290 SO4 S O2 doub N N 291 SO4 S O3 sing N N 292 SO4 S O4 sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TYR N CA sing N N 310 TYR N H sing N N 311 TYR N H2 sing N N 312 TYR CA C sing N N 313 TYR CA CB sing N N 314 TYR CA HA sing N N 315 TYR C O doub N N 316 TYR C OXT sing N N 317 TYR CB CG sing N N 318 TYR CB HB2 sing N N 319 TYR CB HB3 sing N N 320 TYR CG CD1 doub Y N 321 TYR CG CD2 sing Y N 322 TYR CD1 CE1 sing Y N 323 TYR CD1 HD1 sing N N 324 TYR CD2 CE2 doub Y N 325 TYR CD2 HD2 sing N N 326 TYR CE1 CZ doub Y N 327 TYR CE1 HE1 sing N N 328 TYR CE2 CZ sing Y N 329 TYR CE2 HE2 sing N N 330 TYR CZ OH sing N N 331 TYR OH HH sing N N 332 TYR OXT HXT sing N N 333 VAL N CA sing N N 334 VAL N H sing N N 335 VAL N H2 sing N N 336 VAL CA C sing N N 337 VAL CA CB sing N N 338 VAL CA HA sing N N 339 VAL C O doub N N 340 VAL C OXT sing N N 341 VAL CB CG1 sing N N 342 VAL CB CG2 sing N N 343 VAL CB HB sing N N 344 VAL CG1 HG11 sing N N 345 VAL CG1 HG12 sing N N 346 VAL CG1 HG13 sing N N 347 VAL CG2 HG21 sing N N 348 VAL CG2 HG22 sing N N 349 VAL CG2 HG23 sing N N 350 VAL OXT HXT sing N N 351 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1QKK _pdbx_initial_refinement_model.details 'PDB ENTRY 1QKK' #