HEADER HYDROLASE 14-MAR-02 1L7A TITLE STRUCTURAL GENOMICS, CRYSTAL STRUCTURE OF CEPHALOSPORIN C DEACETYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEPHALOSPORIN C DEACETYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.41; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: CAH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET VARIANT; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, ALPHA-BETA-ALPHA SANDWICH, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,O.KOROLEVA,F.COLLERT,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 6 14-FEB-24 1L7A 1 REMARK REVDAT 5 11-OCT-17 1L7A 1 REMARK REVDAT 4 24-FEB-09 1L7A 1 VERSN REVDAT 3 02-AUG-05 1L7A 1 DBREF SEQADV REVDAT 2 18-JAN-05 1L7A 1 AUTHOR KEYWDS REMARK REVDAT 1 21-JAN-03 1L7A 0 JRNL AUTH R.ZHANG,O.KOROLEVA,F.COLLERT,A.JOACHIMIAK JRNL TITL 1.5A CRYSTAL STRUCTURE OF THE CEPHALOSPORIN C DEACETYLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 276511.430 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 185125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9185 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 27835 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1429 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.006 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.06 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.750 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.350 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.170 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 52.58 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE NUMBER OF REFLECTIONS USED IN REMARK 3 REFINEMENT INCLUDE FRIEDEL PAIRS. THEREFORE, THE NUMBER OF REMARK 3 REFLECTIONS FOR REFINEMENT IS LARGER THAN THE NUMBER COLLECTED. REMARK 4 REMARK 4 1L7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9791, 0.9520 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.92 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.54 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.955 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 78.22300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.16207 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.91600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 78.22300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.16207 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.91600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 78.22300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.16207 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 43.91600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 78.22300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 45.16207 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.91600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 78.22300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 45.16207 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 43.91600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 78.22300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 45.16207 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.91600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 90.32414 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 87.83200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 90.32414 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 87.83200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 90.32414 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 87.83200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 90.32414 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 87.83200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 90.32414 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 87.83200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 90.32414 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 87.83200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 156.44600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 78.22300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 135.48621 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 551 O HOH B 906 1.88 REMARK 500 O HOH A 440 O HOH A 604 2.08 REMARK 500 O HOH B 454 O HOH B 732 2.11 REMARK 500 O HOH B 678 O HOH B 823 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 17 OE2 GLU B 17 16544 1.51 REMARK 500 CD GLU B 17 OE2 GLU B 17 16544 1.58 REMARK 500 OE1 GLU B 17 OE2 GLU B 17 16544 1.68 REMARK 500 CD GLU B 17 CD GLU B 17 16544 1.80 REMARK 500 CD GLU B 17 OE1 GLU B 17 16544 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 48 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 PRO A 81 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 TYR A 95 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 TYR A 95 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 230 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 294 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 58 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR B 95 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR B 95 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 118 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 122 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP B 144 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG B 151 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 151 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 159 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP B 171 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 174 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLN B 220 CA - C - O ANGL. DEV. = -32.5 DEGREES REMARK 500 GLN B 220 O - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 PRO B 221 C - N - CD ANGL. DEV. = -21.8 DEGREES REMARK 500 PRO B 221 O - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG B 256 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 4 -19.88 -160.82 REMARK 500 GLU A 41 54.69 39.58 REMARK 500 SER A 63 -158.87 -135.67 REMARK 500 ARG A 122 -56.26 68.38 REMARK 500 SER A 181 -116.41 46.49 REMARK 500 TYR A 204 81.76 5.35 REMARK 500 GLN A 220 -173.26 -68.33 REMARK 500 PHE B 4 -21.26 -155.37 REMARK 500 LYS B 15 89.19 -150.12 REMARK 500 ARG B 122 -45.34 64.00 REMARK 500 SER B 181 -114.85 45.72 REMARK 500 TYR B 204 78.88 2.96 REMARK 500 LEU B 207 45.11 73.01 REMARK 500 PRO B 221 11.69 -149.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 220 PRO B 221 60.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 122 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 81 15.56 REMARK 500 GLN B 220 27.29 REMARK 500 PRO B 221 -18.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC1052 RELATED DB: TARGETDB DBREF 1L7A A 1 318 UNP P94388 P94388_BACSU 1 318 DBREF 1L7A B 1 318 UNP P94388 P94388_BACSU 1 318 SEQADV 1L7A ARG A 122 UNP P94388 SER 122 SEE REMARK 999 SEQADV 1L7A ILE A 315 UNP P94388 HIS 315 SEE REMARK 999 SEQADV 1L7A ARG B 122 UNP P94388 SER 122 SEE REMARK 999 SEQADV 1L7A ILE B 315 UNP P94388 HIS 315 SEE REMARK 999 SEQRES 1 A 318 MET GLN LEU PHE ASP LEU PRO LEU ASP GLN LEU GLN THR SEQRES 2 A 318 TYR LYS PRO GLU LYS THR ALA PRO LYS ASP PHE SER GLU SEQRES 3 A 318 PHE TRP LYS LEU SER LEU GLU GLU LEU ALA LYS VAL GLN SEQRES 4 A 318 ALA GLU PRO ASP LEU GLN PRO VAL ASP TYR PRO ALA ASP SEQRES 5 A 318 GLY VAL LYS VAL TYR ARG LEU THR TYR LYS SER PHE GLY SEQRES 6 A 318 ASN ALA ARG ILE THR GLY TRP TYR ALA VAL PRO ASP LYS SEQRES 7 A 318 GLU GLY PRO HIS PRO ALA ILE VAL LYS TYR HIS GLY TYR SEQRES 8 A 318 ASN ALA SER TYR ASP GLY GLU ILE HIS GLU MET VAL ASN SEQRES 9 A 318 TRP ALA LEU HIS GLY TYR ALA THR PHE GLY MET LEU VAL SEQRES 10 A 318 ARG GLY GLN GLN ARG SER GLU ASP THR SER ILE SER PRO SEQRES 11 A 318 HIS GLY HIS ALA LEU GLY TRP MET THR LYS GLY ILE LEU SEQRES 12 A 318 ASP LYS ASP THR TYR TYR TYR ARG GLY VAL TYR LEU ASP SEQRES 13 A 318 ALA VAL ARG ALA LEU GLU VAL ILE SER SER PHE ASP GLU SEQRES 14 A 318 VAL ASP GLU THR ARG ILE GLY VAL THR GLY GLY SER GLN SEQRES 15 A 318 GLY GLY GLY LEU THR ILE ALA ALA ALA ALA LEU SER ASP SEQRES 16 A 318 ILE PRO LYS ALA ALA VAL ALA ASP TYR PRO TYR LEU SER SEQRES 17 A 318 ASN PHE GLU ARG ALA ILE ASP VAL ALA LEU GLU GLN PRO SEQRES 18 A 318 TYR LEU GLU ILE ASN SER PHE PHE ARG ARG ASN GLY SER SEQRES 19 A 318 PRO GLU THR GLU VAL GLN ALA MET LYS THR LEU SER TYR SEQRES 20 A 318 PHE ASP ILE MET ASN LEU ALA ASP ARG VAL LYS VAL PRO SEQRES 21 A 318 VAL LEU MET SER ILE GLY LEU ILE ASP LYS VAL THR PRO SEQRES 22 A 318 PRO SER THR VAL PHE ALA ALA TYR ASN HIS LEU GLU THR SEQRES 23 A 318 LYS LYS GLU LEU LYS VAL TYR ARG TYR PHE GLY HIS GLU SEQRES 24 A 318 TYR ILE PRO ALA PHE GLN THR GLU LYS LEU ALA PHE PHE SEQRES 25 A 318 LYS GLN ILE LEU LYS GLY SEQRES 1 B 318 MET GLN LEU PHE ASP LEU PRO LEU ASP GLN LEU GLN THR SEQRES 2 B 318 TYR LYS PRO GLU LYS THR ALA PRO LYS ASP PHE SER GLU SEQRES 3 B 318 PHE TRP LYS LEU SER LEU GLU GLU LEU ALA LYS VAL GLN SEQRES 4 B 318 ALA GLU PRO ASP LEU GLN PRO VAL ASP TYR PRO ALA ASP SEQRES 5 B 318 GLY VAL LYS VAL TYR ARG LEU THR TYR LYS SER PHE GLY SEQRES 6 B 318 ASN ALA ARG ILE THR GLY TRP TYR ALA VAL PRO ASP LYS SEQRES 7 B 318 GLU GLY PRO HIS PRO ALA ILE VAL LYS TYR HIS GLY TYR SEQRES 8 B 318 ASN ALA SER TYR ASP GLY GLU ILE HIS GLU MET VAL ASN SEQRES 9 B 318 TRP ALA LEU HIS GLY TYR ALA THR PHE GLY MET LEU VAL SEQRES 10 B 318 ARG GLY GLN GLN ARG SER GLU ASP THR SER ILE SER PRO SEQRES 11 B 318 HIS GLY HIS ALA LEU GLY TRP MET THR LYS GLY ILE LEU SEQRES 12 B 318 ASP LYS ASP THR TYR TYR TYR ARG GLY VAL TYR LEU ASP SEQRES 13 B 318 ALA VAL ARG ALA LEU GLU VAL ILE SER SER PHE ASP GLU SEQRES 14 B 318 VAL ASP GLU THR ARG ILE GLY VAL THR GLY GLY SER GLN SEQRES 15 B 318 GLY GLY GLY LEU THR ILE ALA ALA ALA ALA LEU SER ASP SEQRES 16 B 318 ILE PRO LYS ALA ALA VAL ALA ASP TYR PRO TYR LEU SER SEQRES 17 B 318 ASN PHE GLU ARG ALA ILE ASP VAL ALA LEU GLU GLN PRO SEQRES 18 B 318 TYR LEU GLU ILE ASN SER PHE PHE ARG ARG ASN GLY SER SEQRES 19 B 318 PRO GLU THR GLU VAL GLN ALA MET LYS THR LEU SER TYR SEQRES 20 B 318 PHE ASP ILE MET ASN LEU ALA ASP ARG VAL LYS VAL PRO SEQRES 21 B 318 VAL LEU MET SER ILE GLY LEU ILE ASP LYS VAL THR PRO SEQRES 22 B 318 PRO SER THR VAL PHE ALA ALA TYR ASN HIS LEU GLU THR SEQRES 23 B 318 LYS LYS GLU LEU LYS VAL TYR ARG TYR PHE GLY HIS GLU SEQRES 24 B 318 TYR ILE PRO ALA PHE GLN THR GLU LYS LEU ALA PHE PHE SEQRES 25 B 318 LYS GLN ILE LEU LYS GLY FORMUL 3 HOH *503(H2 O) HELIX 1 1 PRO A 7 THR A 13 1 7 HELIX 2 2 ASP A 23 LYS A 37 1 15 HELIX 3 3 PHE A 64 ASN A 66 5 3 HELIX 4 4 TYR A 95 GLY A 97 5 3 HELIX 5 5 GLU A 98 HIS A 108 1 11 HELIX 6 6 TYR A 148 PHE A 167 1 20 HELIX 7 7 SER A 181 SER A 194 1 14 HELIX 8 8 ASN A 209 ALA A 217 1 9 HELIX 9 9 LEU A 223 ASN A 232 1 10 HELIX 10 10 SER A 234 TYR A 247 1 14 HELIX 11 11 ASP A 249 ALA A 254 1 6 HELIX 12 12 ASP A 255 VAL A 257 5 3 HELIX 13 13 PRO A 273 LEU A 284 1 12 HELIX 14 14 ILE A 301 LYS A 317 1 17 HELIX 15 15 PRO B 7 GLN B 12 1 6 HELIX 16 16 ASP B 23 LYS B 37 1 15 HELIX 17 17 PHE B 64 ASN B 66 5 3 HELIX 18 18 TYR B 95 GLY B 97 5 3 HELIX 19 19 GLU B 98 HIS B 108 1 11 HELIX 20 20 TYR B 148 SER B 166 1 19 HELIX 21 21 SER B 181 SER B 194 1 14 HELIX 22 22 ASN B 209 ALA B 217 1 9 HELIX 23 23 TYR B 222 ASN B 232 1 11 HELIX 24 24 SER B 234 TYR B 247 1 14 HELIX 25 25 ASP B 249 ALA B 254 1 6 HELIX 26 26 ASP B 255 VAL B 257 5 3 HELIX 27 27 PRO B 273 LEU B 284 1 12 HELIX 28 28 ILE B 301 LYS B 317 1 17 SHEET 1 A 9 ASP A 43 VAL A 47 0 SHEET 2 A 9 VAL A 54 SER A 63 -1 O VAL A 56 N VAL A 47 SHEET 3 A 9 ALA A 67 PRO A 76 -1 O ILE A 69 N TYR A 61 SHEET 4 A 9 ALA A 111 MET A 115 -1 O THR A 112 N ALA A 74 SHEET 5 A 9 HIS A 82 TYR A 88 1 N LYS A 87 O PHE A 113 SHEET 6 A 9 VAL A 170 GLY A 180 1 O ASP A 171 N HIS A 82 SHEET 7 A 9 ALA A 199 ASP A 203 1 O VAL A 201 N VAL A 177 SHEET 8 A 9 VAL A 261 GLY A 266 1 O LEU A 262 N ALA A 202 SHEET 9 A 9 LYS A 288 TYR A 293 1 O LYS A 291 N MET A 263 SHEET 1 B 9 ASP B 43 PRO B 46 0 SHEET 2 B 9 VAL B 54 LYS B 62 -1 O THR B 60 N ASP B 43 SHEET 3 B 9 ARG B 68 PRO B 76 -1 O GLY B 71 N LEU B 59 SHEET 4 B 9 ALA B 111 MET B 115 -1 O THR B 112 N ALA B 74 SHEET 5 B 9 HIS B 82 TYR B 88 1 N LYS B 87 O PHE B 113 SHEET 6 B 9 VAL B 170 GLY B 179 1 O ASP B 171 N HIS B 82 SHEET 7 B 9 ALA B 199 ALA B 202 1 O VAL B 201 N VAL B 177 SHEET 8 B 9 VAL B 261 GLY B 266 1 O LEU B 262 N ALA B 202 SHEET 9 B 9 LYS B 288 TYR B 293 1 O LYS B 291 N MET B 263 CISPEP 1 GLY A 80 PRO A 81 0 -1.68 CISPEP 2 GLN A 220 PRO A 221 0 -4.47 CISPEP 3 GLY B 80 PRO B 81 0 -1.48 CRYST1 156.446 156.446 131.748 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006392 0.003690 0.000000 0.00000 SCALE2 0.000000 0.007381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007590 0.00000