HEADER HYDROLASE 21-MAR-02 1L8O TITLE MOLECULAR BASIS FOR THE LOCAL CONFORMATIONAL REARRANGEMENT OF HUMAN TITLE 2 PHOSPHOSERINE PHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-3-PHOSPHOSERINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PSP, O-PHOSPHOSERINE PHOSPHOHYDROLASE; COMPND 5 EC: 3.1.3.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PHOSPHATASE, CONFORMATIONAL REARRANGEMENT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.KIM,Y.S.HEO,J.H.KIM,M.H.PARK,J.MOON,S.Y.PARK,T.G.LEE,Y.H.JEON, AUTHOR 2 S.RO,K.Y.HWANG REVDAT 3 10-NOV-21 1L8O 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1L8O 1 VERSN REVDAT 1 01-APR-03 1L8O 0 JRNL AUTH H.Y.KIM,Y.S.HEO,J.H.KIM,M.H.PARK,J.MOON,E.KIM,D.KWON,J.YOON, JRNL AUTH 2 D.SHIN,E.J.JEONG,S.Y.PARK,T.G.LEE,Y.H.JEON,S.RO,J.M.CHO, JRNL AUTH 3 K.Y.HWANG JRNL TITL MOLECULAR BASIS FOR THE LOCAL CONFORMATIONAL REARRANGEMENT JRNL TITL 2 OF HUMAN PHOSPHOSERINE PHOSPHATASE JRNL REF J.BIOL.CHEM. V. 277 46651 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12213811 JRNL DOI 10.1074/JBC.M204866200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 834055.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 11754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 808 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1558 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 182 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.042 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.26000 REMARK 3 B22 (A**2) : 2.26000 REMARK 3 B33 (A**2) : -4.52000 REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.01 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.563 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 15.53 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PO4.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PO4.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52545 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.10650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.10650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.90600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.10650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.10650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.90600 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 53.10650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 53.10650 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.90600 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 53.10650 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 53.10650 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.90600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 SER A 3 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASP B 22 O3 PO4 B 1901 1.81 REMARK 500 OD2 ASP B 22 O4 PO4 B 1901 1.91 REMARK 500 OG1 THR B 182 OXT SER B 1900 1.92 REMARK 500 NH1 ARG A 202 O SER A 900 1.94 REMARK 500 O4 PO4 B 1901 CB SER B 1900 2.00 REMARK 500 O1 PO4 A 901 OG SER A 900 2.15 REMARK 500 O ALA B 120 O LEU B 123 2.15 REMARK 500 O4 PO4 B 1901 OG SER B 1900 2.16 REMARK 500 P PO4 B 1901 OG SER B 1900 2.17 REMARK 500 CA SER B 109 O2 PO4 B 1901 2.19 REMARK 500 N GLY B 110 O1 PO4 B 1901 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 23 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 89.69 60.07 REMARK 500 TYR A 12 164.88 71.37 REMARK 500 ALA A 14 -95.33 -119.21 REMARK 500 ASP A 15 -58.73 173.97 REMARK 500 THR A 24 -53.95 -130.39 REMARK 500 GLU A 41 -77.44 -60.13 REMARK 500 SER A 45 9.70 -53.04 REMARK 500 ARG A 49 -76.29 -87.46 REMARK 500 PHE A 58 171.55 30.32 REMARK 500 LYS A 59 -78.69 60.47 REMARK 500 GLN A 70 78.04 44.46 REMARK 500 ILE A 91 -42.48 -133.48 REMARK 500 ARG A 97 2.45 -67.80 REMARK 500 ARG A 101 28.81 -78.93 REMARK 500 PHE A 112 123.01 70.04 REMARK 500 PRO A 126 152.17 -47.11 REMARK 500 ASN A 129 43.01 -105.63 REMARK 500 GLN A 150 140.37 -39.74 REMARK 500 THR A 152 11.91 -60.79 REMARK 500 HIS A 170 122.93 61.24 REMARK 500 LYS A 172 15.75 48.13 REMARK 500 LYS A 173 68.88 -176.51 REMARK 500 ALA A 190 -160.21 -100.02 REMARK 500 ASP A 191 -124.72 -100.37 REMARK 500 ASN A 199 -53.14 -120.23 REMARK 500 ILE A 201 -70.71 -80.38 REMARK 500 ARG A 202 73.17 68.92 REMARK 500 GLN A 204 -2.29 -56.48 REMARK 500 ASP A 207 41.88 -91.52 REMARK 500 ASN A 208 -17.44 -157.91 REMARK 500 TRP A 211 101.80 67.91 REMARK 500 LEU A 219 -30.50 -142.70 REMARK 500 SER B 5 -22.51 -154.84 REMARK 500 ARG B 8 -70.13 -81.16 REMARK 500 SER B 13 5.20 -61.59 REMARK 500 SER B 23 17.54 59.34 REMARK 500 THR B 24 -64.41 -125.89 REMARK 500 CYS B 38 -88.67 -94.20 REMARK 500 ALA B 51 57.03 -96.32 REMARK 500 MET B 52 -70.89 -63.28 REMARK 500 ALA B 55 94.45 -56.75 REMARK 500 VAL B 56 107.32 65.53 REMARK 500 PRO B 57 161.60 -36.49 REMARK 500 ALA B 60 -78.49 -50.56 REMARK 500 GLU B 64 -80.03 -43.26 REMARK 500 ARG B 65 -33.07 -35.55 REMARK 500 GLN B 83 62.18 15.93 REMARK 500 PRO B 89 -39.25 -34.49 REMARK 500 ILE B 91 -70.87 10.18 REMARK 500 ARG B 92 -62.25 -25.76 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SER A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SER B 1900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L8L RELATED DB: PDB REMARK 900 1L8L CONTAINS CRYSTAL STRUCTURE OF THE SAME PROTEIN COMPLEX WITH APO DBREF 1L8O A 1 225 UNP P78330 SERB_HUMAN 1 225 DBREF 1L8O B 1 225 UNP P78330 SERB_HUMAN 1 225 SEQADV 1L8O PHE A 164 UNP P78330 LEU 164 ENGINEERED MUTATION SEQADV 1L8O PHE B 164 UNP P78330 LEU 164 ENGINEERED MUTATION SEQRES 1 A 225 MET ILE SER HIS SER GLU LEU ARG LYS LEU PHE TYR SER SEQRES 2 A 225 ALA ASP ALA VAL CYS PHE ASP VAL ASP SER THR VAL ILE SEQRES 3 A 225 ARG GLU GLU GLY ILE ASP GLU LEU ALA LYS ILE CYS GLY SEQRES 4 A 225 VAL GLU ASP ALA VAL SER GLU MET THR ARG ARG ALA MET SEQRES 5 A 225 GLY GLY ALA VAL PRO PHE LYS ALA ALA LEU THR GLU ARG SEQRES 6 A 225 LEU ALA LEU ILE GLN PRO SER ARG GLU GLN VAL GLN ARG SEQRES 7 A 225 LEU ILE ALA GLU GLN PRO PRO HIS LEU THR PRO GLY ILE SEQRES 8 A 225 ARG GLU LEU VAL SER ARG LEU GLN GLU ARG ASN VAL GLN SEQRES 9 A 225 VAL PHE LEU ILE SER GLY GLY PHE ARG SER ILE VAL GLU SEQRES 10 A 225 HIS VAL ALA SER LYS LEU ASN ILE PRO ALA THR ASN VAL SEQRES 11 A 225 PHE ALA ASN ARG LEU LYS PHE TYR PHE ASN GLY GLU TYR SEQRES 12 A 225 ALA GLY PHE ASP GLU THR GLN PRO THR ALA GLU SER GLY SEQRES 13 A 225 GLY LYS GLY LYS VAL ILE LYS PHE LEU LYS GLU LYS PHE SEQRES 14 A 225 HIS PHE LYS LYS ILE ILE MET ILE GLY ASP GLY ALA THR SEQRES 15 A 225 ASP MET GLU ALA CYS PRO PRO ALA ASP ALA PHE ILE GLY SEQRES 16 A 225 PHE GLY GLY ASN VAL ILE ARG GLN GLN VAL LYS ASP ASN SEQRES 17 A 225 ALA LYS TRP TYR ILE THR ASP PHE VAL GLU LEU LEU GLY SEQRES 18 A 225 GLU LEU GLU GLU SEQRES 1 B 225 MET ILE SER HIS SER GLU LEU ARG LYS LEU PHE TYR SER SEQRES 2 B 225 ALA ASP ALA VAL CYS PHE ASP VAL ASP SER THR VAL ILE SEQRES 3 B 225 ARG GLU GLU GLY ILE ASP GLU LEU ALA LYS ILE CYS GLY SEQRES 4 B 225 VAL GLU ASP ALA VAL SER GLU MET THR ARG ARG ALA MET SEQRES 5 B 225 GLY GLY ALA VAL PRO PHE LYS ALA ALA LEU THR GLU ARG SEQRES 6 B 225 LEU ALA LEU ILE GLN PRO SER ARG GLU GLN VAL GLN ARG SEQRES 7 B 225 LEU ILE ALA GLU GLN PRO PRO HIS LEU THR PRO GLY ILE SEQRES 8 B 225 ARG GLU LEU VAL SER ARG LEU GLN GLU ARG ASN VAL GLN SEQRES 9 B 225 VAL PHE LEU ILE SER GLY GLY PHE ARG SER ILE VAL GLU SEQRES 10 B 225 HIS VAL ALA SER LYS LEU ASN ILE PRO ALA THR ASN VAL SEQRES 11 B 225 PHE ALA ASN ARG LEU LYS PHE TYR PHE ASN GLY GLU TYR SEQRES 12 B 225 ALA GLY PHE ASP GLU THR GLN PRO THR ALA GLU SER GLY SEQRES 13 B 225 GLY LYS GLY LYS VAL ILE LYS PHE LEU LYS GLU LYS PHE SEQRES 14 B 225 HIS PHE LYS LYS ILE ILE MET ILE GLY ASP GLY ALA THR SEQRES 15 B 225 ASP MET GLU ALA CYS PRO PRO ALA ASP ALA PHE ILE GLY SEQRES 16 B 225 PHE GLY GLY ASN VAL ILE ARG GLN GLN VAL LYS ASP ASN SEQRES 17 B 225 ALA LYS TRP TYR ILE THR ASP PHE VAL GLU LEU LEU GLY SEQRES 18 B 225 GLU LEU GLU GLU HET PO4 A 901 5 HET SER A 900 7 HET PO4 B1901 5 HET SER B1900 7 HETNAM PO4 PHOSPHATE ION HETNAM SER SERINE FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 SER 2(C3 H7 N O3) HELIX 1 1 ILE A 31 CYS A 38 1 8 HELIX 2 2 VAL A 40 SER A 45 1 6 HELIX 3 3 LYS A 59 GLN A 70 1 12 HELIX 4 4 SER A 72 ALA A 81 1 10 HELIX 5 5 THR A 88 ARG A 92 5 5 HELIX 6 6 VAL A 95 GLU A 100 1 6 HELIX 7 7 PHE A 112 LYS A 122 1 11 HELIX 8 8 PRO A 126 THR A 128 5 3 HELIX 9 9 GLN A 150 GLU A 154 5 5 HELIX 10 10 GLY A 156 LYS A 163 1 8 HELIX 11 11 LYS A 163 LYS A 168 1 6 HELIX 12 12 GLY A 180 GLU A 185 1 6 HELIX 13 13 ARG A 202 ASP A 207 1 6 HELIX 14 14 PHE A 216 GLY A 221 1 6 HELIX 15 15 GLU B 29 LYS B 36 1 8 HELIX 16 16 VAL B 40 ARG B 50 1 11 HELIX 17 17 PRO B 57 GLN B 70 1 14 HELIX 18 18 SER B 72 ILE B 80 1 9 HELIX 19 19 ILE B 91 GLU B 100 1 10 HELIX 20 20 PHE B 112 LEU B 123 1 12 HELIX 21 21 PRO B 126 THR B 128 5 3 HELIX 22 22 GLN B 150 GLU B 154 5 5 HELIX 23 23 GLY B 156 HIS B 170 1 15 HELIX 24 24 GLY B 180 MET B 184 5 5 HELIX 25 25 ASP B 215 GLU B 218 5 4 HELIX 26 26 LEU B 219 GLU B 225 1 7 SHEET 1 A 6 VAL A 130 PHE A 131 0 SHEET 2 A 6 PHE A 106 ILE A 108 1 O LEU A 107 N PHE A 131 SHEET 3 A 6 ALA A 16 ASP A 20 1 O VAL A 17 N PHE A 106 SHEET 4 A 6 ILE A 174 GLY A 178 1 N ILE A 175 O ALA A 16 SHEET 5 A 6 PHE A 193 PHE A 196 1 O ILE A 194 N GLY A 178 SHEET 6 A 6 TYR A 212 ILE A 213 1 N ILE A 213 O GLY A 195 SHEET 1 B 4 TYR A 143 PHE A 146 0 SHEET 2 B 4 LEU A 135 TYR A 138 -1 O LYS A 136 N ALA A 144 SHEET 3 B 4 LEU B 135 TYR B 138 -1 O PHE B 137 N PHE A 137 SHEET 4 B 4 TYR B 143 PHE B 146 -1 N ALA B 144 O LYS B 136 SHEET 1 C 5 VAL B 130 PHE B 131 0 SHEET 2 C 5 GLN B 104 ILE B 108 1 O LEU B 107 N PHE B 131 SHEET 3 C 5 ALA B 16 PHE B 19 1 N VAL B 17 O GLN B 104 SHEET 4 C 5 ILE B 174 GLY B 178 1 O ILE B 175 N CYS B 18 SHEET 5 C 5 ALA B 192 GLY B 195 1 O ALA B 192 N MET B 176 LINK OD2 ASP A 22 O4 PO4 A 901 1555 1555 1.55 LINK OD2 ASP B 22 P PO4 B1901 1555 1555 1.59 LINK OD2 ASP B 22 O3 PO4 B1901 1555 1555 0.93 LINK CB SER B 109 O2 PO4 B1901 1555 1555 1.65 LINK OG SER B1900 O1 PO4 B1901 1555 1555 1.43 SITE 1 AC1 6 ASP A 20 VAL A 21 ASP A 22 SER A 109 SITE 2 AC1 6 LYS A 158 SER A 900 SITE 1 AC2 9 ASP B 20 VAL B 21 ASP B 22 ILE B 108 SITE 2 AC2 9 SER B 109 GLY B 110 GLY B 111 LYS B 158 SITE 3 AC2 9 SER B1900 SITE 1 AC3 5 GLY A 180 ALA A 181 THR A 182 ARG A 202 SITE 2 AC3 5 PO4 A 901 SITE 1 AC4 7 ASP B 22 GLY B 110 LYS B 158 ASP B 179 SITE 2 AC4 7 THR B 182 ASP B 183 PO4 B1901 CRYST1 106.213 106.213 87.812 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011388 0.00000